View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17069_high_10 (Length: 317)
Name: NF17069_high_10
Description: NF17069
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17069_high_10 |
 | |
|
| [»] chr5 (2 HSPs) |
| |
|
| [»] chr1 (1 HSPs) |
| |
|
Alignment Details
Target: chr5 (Bit Score: 114; Significance: 8e-58; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 114; E-Value: 8e-58
Query Start/End: Original strand, 200 - 317
Target Start/End: Original strand, 11128165 - 11128282
Alignment:
| Q |
200 |
gtaaataaatatttcttatcattttttattcaaaaatacaacctaaataaaaatttgagatattgagtattgtttgaaagaatgtattaagcttccttgc |
299 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11128165 |
gtaaataaatatttcttatcattttttattcaaaaatacaacctaaataaaaatttgagatattgagtattgtttgaaagaatgtattaagcttccttgc |
11128264 |
T |
|
| Q |
300 |
taaaactttggtagatca |
317 |
Q |
| |
|
||||| |||||||||||| |
|
|
| T |
11128265 |
taaaaatttggtagatca |
11128282 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 28 - 130
Target Start/End: Original strand, 11127975 - 11128077
Alignment:
| Q |
28 |
cccccttagcttcagcagtttaattgaggaatggattgcatcaaaatactcacagaagaagaaaattatatttagtttgactttaaaggaattacatttt |
127 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11127975 |
cccccttagcttcagcagtttaattgaggaatggattgcatcaaaatactcacagaagaagaaaattatatttagtttgactttaaaggaattacatttt |
11128074 |
T |
|
| Q |
128 |
att |
130 |
Q |
| |
|
||| |
|
|
| T |
11128075 |
att |
11128077 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 261 - 317
Target Start/End: Original strand, 19799481 - 19799537
Alignment:
| Q |
261 |
attgagtattgtttgaaagaatgtattaagcttccttgctaaaactttggtagatca |
317 |
Q |
| |
|
||||||||||||| ||||||| |||| ||||||||||||||||| ||| ||||||| |
|
|
| T |
19799481 |
attgagtattgttcgaaagaaagtatgaagcttccttgctaaaaaattgttagatca |
19799537 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University