View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17069_high_12 (Length: 313)
Name: NF17069_high_12
Description: NF17069
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17069_high_12 |
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Alignment Details
Target: chr6 (Bit Score: 269; Significance: 1e-150; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 269; E-Value: 1e-150
Query Start/End: Original strand, 10 - 297
Target Start/End: Complemental strand, 5461873 - 5461585
Alignment:
| Q |
10 |
attattctagaaacctttatattgtagaaaaa-tatggatgatacggtcgaaaatgcaatcgacttcaaaatcatttatattttagaactttgatgttaa |
108 |
Q |
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| T |
5461873 |
attatgctagaaacctttatattgtagaaaaaatatggatggtacggtcgaaaatgcaatcgacttcaaaatcatttatattttagaactttgatgttaa |
5461774 |
T |
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| Q |
109 |
tgcaggatctgaagaaatcacatgagtaccttgtgacatcatatggtgccgatccaacaggaaattcagatagcactgatgcacttcttgctgccatagc |
208 |
Q |
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| T |
5461773 |
tgcaggatctgaagaaatcacatgagtaccttgtgacattatatggtgccgatccaacaggaaattcagatagcactgatgcacttcttgctgccatagc |
5461674 |
T |
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| Q |
209 |
tgatgctgcaaaaggtccaagtaaagggtttttgatgaatggcataattgaccttggaggtgctcaaattaatcttcaaggtggaaatt |
297 |
Q |
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| T |
5461673 |
tgatgctgcaaaaggtccaagtaaagggtttttgatgaatggcataattgaccttggaggtgctcaaattaatcttcaaggtggaaatt |
5461585 |
T |
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Target: chr2 (Bit Score: 63; Significance: 2e-27; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 135 - 297
Target Start/End: Original strand, 15159399 - 15159561
Alignment:
| Q |
135 |
taccttgtgacatcatatggtgccgatccaacaggaaattcagatagcactgatgcacttcttgctgccatagctgatgctgcaaaaggtccaagtaaag |
234 |
Q |
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|||| ||||||||| |||||||| || |||||||| ||||||||||||||||| ||| | ||||| |||||||| ||||| | || ||||||||| ||| |
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| T |
15159399 |
taccatgtgacatcctatggtgcagacccaacaggcaattcagatagcactgaagcattacttgcagccatagcagatgcaaccaatggtccaagtgaag |
15159498 |
T |
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| Q |
235 |
ggtttttgatgaatggcataattgaccttggaggtgctcaaattaatcttcaaggtggaaatt |
297 |
Q |
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| T |
15159499 |
gatatttgatggaaggcatcagtaaccttggaggtgcacagattaatcttgaaggtggaaatt |
15159561 |
T |
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