View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17069_high_20 (Length: 232)
Name: NF17069_high_20
Description: NF17069
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17069_high_20 |
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Alignment Details
Target: chr8 (Bit Score: 178; Significance: 4e-96; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 178; E-Value: 4e-96
Query Start/End: Original strand, 17 - 215
Target Start/End: Original strand, 3778269 - 3778467
Alignment:
| Q |
17 |
aaatagactaattgggtgctattgttgtgcattttctgcaaggctctcgctgtacttgcctccatttttgagaaactattcaccaagaaaccatgagcaa |
116 |
Q |
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| T |
3778269 |
aaatagactaattgggtgctattgttgtgcattttctgcaaggctctcgctgtacttgcctccatttttgagaaactattcaccaagaaaccatgagcaa |
3778368 |
T |
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| Q |
117 |
gagaaaagttcttggaatgtagaagnnnnnnnccgtaagcaggactagatcgatcatgaaaaaattcaggagggagatcttggccatgaatagggatac |
215 |
Q |
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| T |
3778369 |
gagaaaagttcttggaatgtagaagaaaaaaaccgtaagcaggactagatcgatcatgaaaaaattcaggagggagatcttggccatgaatagggatac |
3778467 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 23 - 210
Target Start/End: Complemental strand, 3707581 - 3707394
Alignment:
| Q |
23 |
actaattgggtgctattgttgtgcattttctgcaaggctctcgctgtacttgcctccatttttgagaaactattcaccaagaaaccatgagcaagagaaa |
122 |
Q |
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| T |
3707581 |
actaatttggtggttttgttgtgctcctcctgcaaggctctccctgtacttgcctccatttttgagaaactattcgccaagaaaccatgagcaagagaca |
3707482 |
T |
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| Q |
123 |
agttcttggaatgtagaagnnnnnnnccgtaagcaggactagatcgatcatgaaaaaattcaggagggagatcttggccatgaatagg |
210 |
Q |
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| T |
3707481 |
agttcttggaatgtagaagaaaaatactgtaagcaacactagatcgatcatgaaaaaattcgggaggaagatctttgccgagaatagg |
3707394 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 23 - 200
Target Start/End: Original strand, 3770614 - 3770791
Alignment:
| Q |
23 |
actaattgggtgctattgttgtgcattttctgcaaggctctcgctgtacttgcctccatttttgagaaactattcaccaagaaaccatgagcaagagaaa |
122 |
Q |
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| T |
3770614 |
actaatttggtggttttgttgtgctcctcctgcaaggctctccctgtactagcctccatttttgagaaactattcaccaagaaaccatgagcaagagaca |
3770713 |
T |
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| Q |
123 |
agttcttggaatgtagaagnnnnnnnccgtaagcaggactagatcgatcatgaaaaaattcaggagggagatcttggc |
200 |
Q |
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| T |
3770714 |
agttcttggaatgtagaagaaaaaaactgtaacgaacactagatcgatcatgaaaaaattcgggaggaagatcttggc |
3770791 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 52 - 141
Target Start/End: Complemental strand, 3719061 - 3718972
Alignment:
| Q |
52 |
ctgcaaggctctcgctgtacttgcctccatttttgagaaactattcaccaagaaaccatgagcaagagaaaagttcttggaatgtagaag |
141 |
Q |
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| T |
3719061 |
ctgcaaggctctccctgtacttgcctccatttttgagaaactattcaccaagaaaccatgagcaagagacgagtttttgcaatgttgaag |
3718972 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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