View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17069_high_4 (Length: 416)
Name: NF17069_high_4
Description: NF17069
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17069_high_4 |
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Alignment Details
Target: chr7 (Bit Score: 330; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 330; E-Value: 0
Query Start/End: Original strand, 16 - 399
Target Start/End: Original strand, 41745488 - 41745865
Alignment:
| Q |
16 |
atatatatgtggttttttcaaatatgagttgtatgtacaagatataatataatttnnnnnnnntgtcagcagaaacatagaaaatttattgcagtttggc |
115 |
Q |
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| T |
41745488 |
atatatatgtggttttttcaaatatgagttgtatgtacaagatataatttaa------aaaaatgtcagcagaaacatagaaaatttattgcagtttggc |
41745581 |
T |
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| Q |
116 |
aactatccatttcttctcattaatttgtatagaatcaatttcatagcaaccttcacgccacgcaggacatgtatttttgggccctaaagtacatgtttgc |
215 |
Q |
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||| ||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41745582 |
aaccatccatttcttctcattaatttgtacagaatcaatttcagagcaaccttcacgccacgcaggacatgtatttttgggccctaaagtacatgtttgc |
41745681 |
T |
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| Q |
216 |
cacaaggaaataatattgtttaattttagcaatggttgcaatccccatctcaatattttatttgtcgtcaaaaaggaattcatgaatgaatgcttgttta |
315 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41745682 |
cacaaggaaataatattgtttaattttagcaatggttgcaatccccatctcaatattttatttgtcgtcaaaaaggaattcatgaatgaatgcttgttta |
41745781 |
T |
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| Q |
316 |
agagaagtatcgttcttgtaaacactgatgcggtgccgttgcagtgttaatgactcaagcaatgaatcacacactacccttagt |
399 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41745782 |
agagaagtatcgttcttgtaaacactgatgcggtgccgttgcagtgttaatgactcaagcaatgaatcacacactacccttagt |
41745865 |
T |
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