View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17069_high_6 (Length: 385)

Name: NF17069_high_6
Description: NF17069
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17069_high_6
NF17069_high_6
[»] chr1 (25 HSPs)
chr1 (90-310)||(32715689-32715909)
chr1 (90-316)||(27442297-27442523)
chr1 (90-257)||(17971345-17971514)
chr1 (90-320)||(28723885-28724115)
chr1 (199-320)||(45691522-45691643)
chr1 (90-320)||(36437117-36437351)
chr1 (102-285)||(13603078-13603264)
chr1 (94-318)||(28165051-28165273)
chr1 (90-278)||(31152431-31152618)
chr1 (98-235)||(39150187-39150324)
chr1 (90-320)||(42745540-42745769)
chr1 (91-251)||(9851803-9851963)
chr1 (173-246)||(42454867-42454940)
chr1 (268-320)||(17971072-17971124)
chr1 (90-245)||(3574722-3574880)
chr1 (92-246)||(46443700-46443853)
chr1 (95-290)||(31181003-31181199)
chr1 (94-320)||(11435553-11435773)
chr1 (181-295)||(948097-948212)
chr1 (173-316)||(31003510-31003652)
chr1 (222-285)||(51120672-51120735)
chr1 (202-272)||(25130222-25130292)
chr1 (90-124)||(31003698-31003732)
chr1 (192-287)||(32800407-32800503)
chr1 (91-166)||(17988358-17988434)
[»] chr4 (13 HSPs)
chr4 (95-317)||(25376768-25376991)
chr4 (130-321)||(31707272-31707460)
chr4 (94-318)||(18838752-18838977)
chr4 (138-321)||(25382395-25382578)
chr4 (90-188)||(54863920-54864019)
chr4 (93-286)||(16572251-16572442)
chr4 (192-278)||(34326143-34326228)
chr4 (173-243)||(42312399-42312469)
chr4 (173-273)||(30615196-30615296)
chr4 (95-285)||(47231529-47231718)
chr4 (190-289)||(6087845-6087944)
chr4 (190-245)||(27184272-27184327)
chr4 (173-234)||(27032218-27032279)
[»] chr2 (26 HSPs)
chr2 (92-317)||(14200290-14200516)
chr2 (94-297)||(7011095-7011296)
chr2 (99-320)||(32872346-32872568)
chr2 (131-321)||(45723837-45724028)
chr2 (191-320)||(34309310-34309439)
chr2 (91-290)||(38496470-38496670)
chr2 (90-290)||(38214109-38214310)
chr2 (98-317)||(3269920-3270140)
chr2 (99-307)||(31404951-31405167)
chr2 (90-284)||(40503871-40504066)
chr2 (90-320)||(16781258-16781488)
chr2 (98-290)||(3268802-3268995)
chr2 (98-290)||(3269361-3269554)
chr2 (90-245)||(39063590-39063746)
chr2 (90-275)||(19285876-19286062)
chr2 (92-249)||(40442716-40442874)
chr2 (173-320)||(21794916-21795064)
chr2 (221-320)||(21229611-21229710)
chr2 (189-290)||(40664331-40664432)
chr2 (201-290)||(13027910-13027998)
chr2 (94-149)||(3711930-3711985)
chr2 (105-188)||(34262721-34262804)
chr2 (105-274)||(2287486-2287654)
chr2 (173-235)||(31365047-31365109)
chr2 (98-163)||(9045634-9045699)
chr2 (173-246)||(44173634-44173707)
[»] chr6 (13 HSPs)
chr6 (102-320)||(6657887-6658104)
chr6 (90-320)||(19780227-19780458)
chr6 (90-320)||(180336-180567)
chr6 (128-306)||(9425527-9425706)
chr6 (90-260)||(606598-606769)
chr6 (131-278)||(34837113-34837260)
chr6 (192-287)||(12143674-12143768)
chr6 (189-321)||(7926901-7927034)
chr6 (95-251)||(1856752-1856908)
chr6 (221-287)||(5428830-5428895)
chr6 (179-251)||(2950144-2950214)
chr6 (190-245)||(2443884-2443939)
chr6 (222-272)||(24789903-24789953)
[»] chr8 (18 HSPs)
chr8 (90-314)||(38209446-38209671)
chr8 (90-292)||(36408134-36408336)
chr8 (90-320)||(8251232-8251463)
chr8 (90-290)||(2207768-2207967)
chr8 (90-290)||(1445349-1445550)
chr8 (146-315)||(5923871-5924044)
chr8 (90-235)||(36054812-36054958)
chr8 (94-320)||(31658853-31659080)
chr8 (96-276)||(2520098-2520277)
chr8 (178-314)||(16890194-16890331)
chr8 (101-260)||(2152328-2152488)
chr8 (90-181)||(30112485-30112577)
chr8 (189-245)||(30653627-30653683)
chr8 (178-278)||(30870704-30870804)
chr8 (173-262)||(27518545-27518634)
chr8 (190-263)||(30105597-30105670)
chr8 (90-123)||(35431581-35431614)
chr8 (94-157)||(40694232-40694296)
[»] chr7 (30 HSPs)
chr7 (90-320)||(14568353-14568584)
chr7 (91-313)||(10599677-10599901)
chr7 (90-320)||(41508096-41508327)
chr7 (192-297)||(10409792-10409899)
chr7 (131-245)||(15033300-15033413)
chr7 (94-251)||(20949073-20949230)
chr7 (90-244)||(7307436-7307592)
chr7 (94-188)||(42935454-42935549)
chr7 (199-320)||(42935834-42935947)
chr7 (178-315)||(17757311-17757448)
chr7 (138-278)||(14658737-14658877)
chr7 (190-290)||(45072469-45072569)
chr7 (130-278)||(34470095-34470243)
chr7 (90-290)||(12506704-12506905)
chr7 (99-227)||(46341502-46341631)
chr7 (130-290)||(12485313-12485473)
chr7 (95-166)||(17757486-17757558)
chr7 (192-239)||(13777739-13777786)
chr7 (90-208)||(46101245-46101364)
chr7 (94-239)||(14650104-14650247)
chr7 (91-148)||(29808443-29808501)
chr7 (218-275)||(46101140-46101197)
chr7 (218-278)||(943259-943318)
chr7 (178-321)||(18145860-18146003)
chr7 (173-290)||(2122429-2122547)
chr7 (90-124)||(17205125-17205159)
chr7 (210-291)||(15968471-15968552)
chr7 (257-313)||(9183082-9183138)
chr7 (192-251)||(37048676-37048738)
chr7 (257-321)||(46341710-46341774)
[»] chr3 (30 HSPs)
chr3 (90-320)||(30041227-30041457)
chr3 (152-321)||(43105065-43105236)
chr3 (139-308)||(35104715-35104883)
chr3 (127-290)||(30577822-30577984)
chr3 (90-321)||(46918383-46918614)
chr3 (90-320)||(45261360-45261588)
chr3 (173-320)||(49983788-49983936)
chr3 (92-321)||(40344854-40345080)
chr3 (90-251)||(17003567-17003728)
chr3 (90-320)||(35455304-35455531)
chr3 (95-290)||(22923629-22923828)
chr3 (90-245)||(8825355-8825509)
chr3 (95-164)||(43105935-43106004)
chr3 (99-167)||(49983561-49983630)
chr3 (91-292)||(24650120-24650323)
chr3 (90-275)||(55452425-55452612)
chr3 (90-245)||(41559983-41560133)
chr3 (192-285)||(42279192-42279285)
chr3 (90-196)||(32211834-32211941)
chr3 (189-316)||(36659280-36659407)
chr3 (192-246)||(27828545-27828599)
chr3 (93-320)||(43320058-43320280)
chr3 (90-290)||(48271700-48271899)
chr3 (221-317)||(28695674-28695770)
chr3 (94-149)||(38363520-38363576)
chr3 (128-266)||(49787779-49787919)
chr3 (202-317)||(25294782-25294897)
chr3 (219-320)||(32211740-32211843)
chr3 (96-208)||(25295085-25295198)
chr3 (197-248)||(52596619-52596671)
[»] scaffold0015 (1 HSPs)
scaffold0015 (90-311)||(38763-38984)
[»] scaffold0006 (1 HSPs)
scaffold0006 (102-285)||(131735-131921)
[»] chr5 (20 HSPs)
chr5 (98-320)||(18705003-18705226)
chr5 (91-320)||(3629130-3629360)
chr5 (132-295)||(2225619-2225782)
chr5 (148-246)||(14417911-14418009)
chr5 (90-287)||(6688783-6688983)
chr5 (130-313)||(11690987-11691168)
chr5 (95-248)||(4449438-4449592)
chr5 (130-250)||(11983573-11983692)
chr5 (92-235)||(27193009-27193153)
chr5 (198-286)||(33432786-33432873)
chr5 (320-367)||(11128593-11128640)
chr5 (173-235)||(7735834-7735896)
chr5 (189-235)||(14917819-14917865)
chr5 (171-278)||(29948030-29948137)
chr5 (94-239)||(17693562-17693705)
chr5 (202-260)||(19090223-19090281)
chr5 (193-278)||(17686332-17686417)
chr5 (91-123)||(1962978-1963010)
chr5 (90-122)||(23010688-23010720)
chr5 (187-278)||(39569144-39569233)
[»] scaffold0088 (1 HSPs)
scaffold0088 (94-273)||(51273-51453)
[»] scaffold0024 (1 HSPs)
scaffold0024 (94-320)||(154340-154567)
[»] scaffold1809 (1 HSPs)
scaffold1809 (90-285)||(453-649)
[»] scaffold0836 (1 HSPs)
scaffold0836 (90-316)||(3018-3245)


Alignment Details
Target: chr1 (Bit Score: 165; Significance: 4e-88; HSPs: 25)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 165; E-Value: 4e-88
Query Start/End: Original strand, 90 - 310
Target Start/End: Original strand, 32715689 - 32715909
Alignment:
Q  90 ggtcctatttataagaaaaagtcacaacttttaagatcatttattgcttaaaagacttttctagccctcgtttaatgtaggtattttcaatattagtggg 189  Q
    ||||||||||||||||||||||||||| ||||||| |||||||||| ||||||| |||||||||||||| |||||||| | | |||||||||||||||||    
T  32715689 ggtcctatttataagaaaaagtcacaaattttaaggtcatttattgtttaaaagtcttttctagccctcatttaatgttgatcttttcaatattagtggg 32715788  T
Q  190 tgtatttaatacttcacaaatttttatgagggtatatttgtaaaaacattcaaaaaattacaacaactaataattgtattggttttgatgattttttgtt 289  Q
    | ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||| |||    
T  32715789 tatatttaatacttcacaaatttttatgaggatatatttgtaaaaacattcaaaaaattacaacaactaatgattgtcttggttttgatgatttttggtt 32715888  T
Q  290 tcttttctcatataaaggacc 310  Q
    |||||||| ||||||||||||    
T  32715889 tcttttcttatataaaggacc 32715909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 90 - 316
Target Start/End: Complemental strand, 27442523 - 27442297
Alignment:
Q  90 ggtcctatttataagaaaaagtcacaacttttaagatc-atttattgcttaaaagacttttctagccctcgtttaatgtaggtattttcaatattagtgg 188  Q
    |||||||||||||||||||| |||||||||||||  |  ||||| || |||||||||||||||| ||||| |||||||| ||| ||| |||||||| |||    
T  27442523 ggtcctatttataagaaaaaatcacaacttttaaagtatatttagtgtttaaaagacttttctaaccctcatttaatgttggtcttt-caatattaatgg 27442425  T
Q  189 gtgtatttaatacttcacaaatttttatgagggtatatttgtaaaaacattcaaaaaattacaacaactaataattgtattggttttgatgattttttgt 288  Q
    || ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||| ||||| ||||||||||| |||||| ||    
T  27442424 gtatatttaatacttcacaaatttttatgaggatatatttgtaaaaacattcaaaaaattgcaacaactaatgattgtcttggttttgataatttttggt 27442325  T
Q  289 ttcttttctcatataaaggaccggaggg 316  Q
    ||||||||| |||||||||| |||||||    
T  27442324 ttcttttcttatataaaggatcggaggg 27442297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 90 - 257
Target Start/End: Complemental strand, 17971514 - 17971345
Alignment:
Q  90 ggtcctatttataagaaaaagtcacaacttttaagatc-atttattgcttaaaagacttttctagccctcgtttaatgtaggtattttcaatattagtgg 188  Q
    ||||||||||||||||||||||||||||||||||| |  |||||||| |||||||||||||||| ||||| |||||||| ||| |||||||||||||||     
T  17971514 ggtcctatttataagaaaaagtcacaacttttaaggtatatttattgtttaaaagacttttctaaccctcatttaatgttggtcttttcaatattagtgt 17971415  T
Q  189 gtgtatttaatacttcacaaatttttatgagggtatatttgtaaaaacattcaa-aaaattacaacaact 257  Q
    || |||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||    
T  17971414 gtatatttaatacttcacaaatttttaagagggtatatttgtaaaaacattcaaaaaaattacaacaact 17971345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 111; E-Value: 6e-56
Query Start/End: Original strand, 90 - 320
Target Start/End: Complemental strand, 28724115 - 28723885
Alignment:
Q  90 ggtcctatttataagaaaaagtcacaacttttaagatcatttattgcttaaaagacttttctagccctcgtttaatgtaggtattttcaatattagtggg 189  Q
    ||||| || |||||||||||||||||||||| | |  ||||||||  |||||||||||||||| |||||  |||||||   | |||| |||||||||||     
T  28724115 ggtccaatatataagaaaaagtcacaactttaatgtgcatttattatttaaaagacttttctaaccctcaattaatgtttatctttttaatattagtggt 28724016  T
Q  190 tgtatttaatacttcacaaatttttatgagggtatatttgtaaaaacattcaaaaaattacaacaactaataattgtattggttttgatgattttttgtt 289  Q
    | ||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||  ||||| ||||| |||||| |||||||||||  ||    
T  28724015 tatatttaatacttcacaaatttttatgagggtatatctgtaaaagcattcaaaaaattacaaccgctaatgattgtcttggttatgatgatttttgatt 28723916  T
Q  290 tcttttctcatataaaggaccggagggagta 320  Q
    |||||||| ||| ||| ||||||||||||||    
T  28723915 tcttttcttataaaaatgaccggagggagta 28723885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 199 - 320
Target Start/End: Complemental strand, 45691643 - 45691522
Alignment:
Q  199 tacttcacaaatttttatgagggtatatttgtaaaaacattcaaaaaattacaacaactaataattgtattggttttgatgattttttgtttcttttctc 298  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||  ||||| ||||     
T  45691643 tacttcacaaatttttatgagggtatatttgtaaaaatattcaaaaaattacaacaactaataattgtcttggttttgatgatttttgatttctcttctt 45691544  T
Q  299 atataaaggaccggagggagta 320  Q
    ||| ||| || |||||||||||    
T  45691543 ataaaaaagatcggagggagta 45691522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 90 - 320
Target Start/End: Complemental strand, 36437351 - 36437117
Alignment:
Q  90 ggtcctatttataagaaaaagtcacaacttttaagatcatttattgcttaaaagacttttctagccctcgtttaatgtaggtattttcaatattagtggg 189  Q
    ||||||||||||||||||| |||||||||||||||   | |||||||||||||||||||| || ||||| ||||||||  || |||| ||||||||||||    
T  36437351 ggtcctatttataagaaaatgtcacaacttttaaggatagttattgcttaaaagacttttttatccctcatttaatgtctgtctttttaatattagtggg 36437252  T
Q  190 -tgtatttaatacttcacaaatttttatgagggtatatttgtaaaaacattcaaaaaattacaacaactaataattgtattggttttgatgattttttgt 288  Q
     ||||||||||  |||||||  || ||| ||||||||||||||||||  || ||||| ||||||||| ||||  | | ||||||||||||| |||||| |    
T  36437251 atgtatttaatgtttcacaacattctataagggtatatttgtaaaaatgtttaaaaagttacaacaattaatgctggcattggttttgatggtttttttt 36437152  T
Q  289 ttctt---ttctcatataaaggaccggagggagta 320  Q
    || ||   |||| |||| |||||||||||||||||    
T  36437151 tttttttcttcttatattaaggaccggagggagta 36437117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 102 - 285
Target Start/End: Original strand, 13603078 - 13603264
Alignment:
Q  102 aagaaaaagtcacaacttttaagatcatttattgcttaaaagacttttctagccctcgtttaatgtaggtattttcaatattagtgggtgtatttaat-- 199  Q
    ||||||||||||||||||| | |  ||||||||| | |||||||||||||| || ||  | || ||  || |||| ||||||||||| | ||||||||      
T  13603078 aagaaaaagtcacaactttaaggtgcatttattgttcaaaagacttttctaaccttcaataaaagtttgtctttttaatattagtggttatatttaataa 13603177  T
Q  200 -acttcacaaatttttatgagggtatatttgt-aaaaacattcaaaaaattacaacaactaataattgtattggttttgatgattttt 285  Q
     ||||||||||||||||||||||||||||||| |||||||||| |||||||||||  |||||| ||||| || |||||||||||||||    
T  13603178 tacttcacaaatttttatgagggtatatttgtaaaaaacattc-aaaaattacaattactaatgattgtcttcgttttgatgattttt 13603264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 94 - 318
Target Start/End: Complemental strand, 28165273 - 28165051
Alignment:
Q  94 ctatttataagaaaaagtcacaacttttaagatc-atttattgcttaaaagacttttctagccctcgtttaatgtaggtattttcaatattagtgggtgt 192  Q
    |||||||||| |||| ||||||||||| ||| |  | ||||||||||||||| |||| || ||||| || | | |   | |||| |||||| || | |||    
T  28165273 ctatttataataaaatgtcacaactttaaaggtatagttattgcttaaaagatttttttacccctcattaagtctttatctttttaatattggtagatgt 28165174  T
Q  193 atttaatacttcacaaatttttatgagggtatatttgtaaaaacattcaaaaaattacaacaactaataattgtattggttttgatgattttttgtttct 292  Q
    |||||||  ||||||| ||||||| |||||||||||||||||| |||||||||||||||| || | || |||||||||||||| ||| || || ||   |    
T  28165173 atttaatgtttcacaattttttataagggtatatttgtaaaaatattcaaaaaattacaataattgatgattgtattggttttaatgtttcttggt---t 28165077  T
Q  293 tttctcatataaaggaccggagggag 318  Q
    ||||| |||  |||||||||||||||    
T  28165076 tttcttataataaggaccggagggag 28165051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 90 - 278
Target Start/End: Original strand, 31152431 - 31152618
Alignment:
Q  90 ggtcctatttataagaaaaag-tcacaacttttaagatcat-ttattgcttaaaagacttttctagccctcgtttaatgtaggtattttcaatattagtg 187  Q
    |||||||||||||| | |||  ||||||||||||||||    ||||||||||||||||||| ||| ||||| ||||||||   | |||| ||||||||||    
T  31152431 ggtcctatttataaaagaaatatcacaacttttaagatgtcgttattgcttaaaagactttgctacccctcatttaatgtttctctttt-aatattagtg 31152529  T
Q  188 ggtgtatttaatacttcacaaatttttatgagggtatatttgtaaaaacattcaaaaaattacaacaactaataattgtattggttttgat 278  Q
       |||||||||  ||||||  |||||||||| ||||||||||||||| ||||||||| |||||  || || |||||| ||||||||||||    
T  31152530 aacgtatttaatgtttcaca--tttttatgagcgtatatttgtaaaaatattcaaaaagttacatgaattattaattgcattggttttgat 31152618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 98 - 235
Target Start/End: Complemental strand, 39150324 - 39150187
Alignment:
Q  98 ttataagaaaaagtcacaacttttaagatc-atttattgcttaaaagacttttctagccctcgtttaatgtaggtattttcaatattagtgggtgtattt 196  Q
    |||||||||||  |||| ||||||||| |  | ||||||||||||||||||||||| ||||  ||||||||   | |||| ||||||| || ||||||||    
T  39150324 ttataagaaaatatcactacttttaaggtgtagttattgcttaaaagacttttctaccccttatttaatgtttttgtttttaatattaatgagtgtattt 39150225  T
Q  197 aatacttcacaaatttttatgagggtatatttgtaaaaa 235  Q
    ||| |||||| || |||||||||||||||||||||||||    
T  39150224 aatgcttcac-aacttttatgagggtatatttgtaaaaa 39150187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 90 - 320
Target Start/End: Original strand, 42745540 - 42745769
Alignment:
Q  90 ggtcctatttataagaaaaagtcacaactttt-aagatcatttattgcttaaaagacttttctagccctcgtttaatgtaggtattttcaatattagtgg 188  Q
    ||||||||||||||||||| ||||||| |||| |||   | |||||| |||||| |||||| || ||||| ||||| |   |  |||| |||||||||||    
T  42745540 ggtcctatttataagaaaatgtcacaatttttgaagtataattattgtttaaaatactttt-tatccctcatttaaggattgcctttttaatattagtgg 42745638  T
Q  189 gtgtatttaatacttcacaaatttttatgagggtatatttgtaaaaacattcaaaaaattacaacaactaataattgtattggttttgatgattttttgt 288  Q
     ||||||||||  |||||||  || ||| ||||||||||||||||||  || ||||| |||| |||| |||| || | ||||||||||||| ||||| ||    
T  42745639 atgtatttaatgtttcacaacattctataagggtatatttgtaaaaatgtttaaaaagttacgacaattaatgatagcattggttttgatgttttttggt 42745738  T
Q  289 ttcttttctcatataaaggaccggagggagta 320  Q
    || | |||| |||  ||||||| |||||||||    
T  42745739 ttttcttcttataacaaggacc-gagggagta 42745769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 91 - 251
Target Start/End: Complemental strand, 9851963 - 9851803
Alignment:
Q  91 gtcctatttataagaaaaagtcacaacttttaagatc-atttattgcttaaaagacttttctagccctcgtttaatgtaggtattttcaatattagtggg 189  Q
    |||||||||||||||||| ||||||||||||||  |  | |||||||||||| ||| ||| || ||||  ||||||||   | |||| ||||||||||||    
T  9851963 gtcctatttataagaaaatgtcacaacttttaaagtgtagttattgcttaaatgacctttttatcccta-tttaatgtttctcttttaaatattagtggg 9851865  T
Q  190 tgtatttaatacttcacaaatttttatgagggtatatttgtaaaaacattcaaaaaattaca 251  Q
    | ||||||||  ||||||   |||||| | |||||||||||||||| ||||||||| |||||    
T  9851864 tatatttaatgtttcacagtattttataaaggtatatttgtaaaaatattcaaaaagttaca 9851803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 173 - 246
Target Start/End: Complemental strand, 42454940 - 42454867
Alignment:
Q  173 ttttcaatattagtgggtgtatttaatacttcacaaatttttatgagggtatatttgtaaaaacattcaaaaaa 246  Q
    |||| |||||||||| ||||||||||| ||||| || ||||||||||||||||||| |||||| ||||||||||    
T  42454940 tttttaatattagtgagtgtatttaatgcttcataattttttatgagggtatatttataaaaatattcaaaaaa 42454867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 268 - 320
Target Start/End: Complemental strand, 17971124 - 17971072
Alignment:
Q  268 ttggttttgatgattttttgtttcttttctcatataaaggaccggagggagta 320  Q
    |||||||||||||||||| ||||||||||| ||||||||||||| ||||||||    
T  17971124 ttggttttgatgatttttggtttcttttcttatataaaggaccgaagggagta 17971072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 90 - 245
Target Start/End: Original strand, 3574722 - 3574880
Alignment:
Q  90 ggtcctatttataagaaaaagtcacaacttttaagatc-atttattgcttaaaagacttttctagccctcgtttaatgtaggtattttcaatattagtgg 188  Q
    ||||||||||||||||||| |||||||||||| | ||  | |||||| |||||| | || |||| ||||| ||||||||   |  ||| ||||||| |      
T  3574722 ggtcctatttataagaaaatgtcacaacttttcaaatgtagttattgtttaaaaaatttgtctacccctcatttaatgtttatcattttaatattaattt 3574821  T
Q  189 g--tgtatttaatacttcacaaatttttatgagggtatatttgtaaaaacattcaaaaa 245  Q
    |  ||||||||||| ||||||| ||||||| || |||||||| ||||||||||||||||    
T  3574822 gaatgtatttaatatttcacaattttttataagagtatatttataaaaacattcaaaaa 3574880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 92 - 246
Target Start/End: Original strand, 46443700 - 46443853
Alignment:
Q  92 tcctatttataagaaaaagtcacaacttttaagatc-atttattgcttaaaagacttttctagccctcgtttaatgtaggtattttcaatattagtgggt 190  Q
    ||||||||||||||||| ||||||||||||||| |  | ||||| ||||||| |||||| || ||||| ||||  ||   | |||| ||| ||||||  |    
T  46443700 tcctatttataagaaaacgtcacaacttttaaggtgtaattattacttaaaaaacttttttatccctcatttatagttc-tctttttaatgttagtgaat 46443798  T
Q  191 gtatttaatacttcacaaatttttatgagggtatatttgtaaaaacattcaaaaaa 246  Q
    |||| ||||  ||||||| |||||||| ||||||||||||||||| ||||||||||    
T  46443799 gtatataatgtttcacaa-tttttatgtgggtatatttgtaaaaatattcaaaaaa 46443853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 95 - 290
Target Start/End: Complemental strand, 31181199 - 31181003
Alignment:
Q  95 tatttataagaaaaagtcacaacttttaagatc-atttattgcttaaaagacttttctagccctcgtttaatgtaggtattttc-aatattagtgggtgt 192  Q
    |||||||||||||| ||||||||||||||  |  | |||||| ||||||||||||| ||  | || ||||||||   | ||||  |||||||| | ||||    
T  31181199 tatttataagaaaatgtcacaacttttaacttatagttattgtttaaaagacttttttacacttcatttaatgttttttttttttaatattagcgagtgt 31181100  T
Q  193 atttaatacttcacaaatttttatgagggtatatttgtaaaaacattcaaaaaattacaacaactaataattgtattggttttgatgattttttgttt 290  Q
    |||||||  ||||||| ||| ||| |||||||| ||||||||| ||||||||| |||  |  | |||| |||| ||||||||||||| ||||| ||||    
T  31181099 atttaatgtttcacaattttctataagggtatacttgtaaaaatattcaaaaagtta-tatgattaatgattgcattggttttgatgttttttggttt 31181003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 94 - 320
Target Start/End: Original strand, 11435553 - 11435773
Alignment:
Q  94 ctatttataagaaaaagtcacaacttttaagatc-atttattgcttaaaagacttttctagccctcgtttaatgtaggtattttcaatattagtgggtgt 192  Q
    ||||||||||||||| |||||||||| |||| |  | |||||| |||||| |||||| || |  |  ||||||||  || |||| ||||||||||| |||    
T  11435553 ctatttataagaaaatgtcacaacttataaggtataattattgtttaaaa-acttttatatcatttatttaatgtttgtttttttaatattagtggatgt 11435651  T
Q  193 atttaatacttcacaaatttttatgagggtatatttgtaaaaacattcaaaaaattacaacaactaataattgtattggttttgatgattttttgtttct 292  Q
    ||||||| | |||||| |||||||||||       |||||||| || |||||| |||||  |  |||| |||| ||||||||||||| ||||| |||| |    
T  11435652 atttaatgcatcacaattttttatgagg------atgtaaaaatatgcaaaaagttacactatataatgattgcattggttttgatgttttttggttttt 11435745  T
Q  293 tttctcatataaaggaccggagggagta 320  Q
     |||| |||  ||| |||||||||||||    
T  11435746 cttcttataataagtaccggagggagta 11435773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 181 - 295
Target Start/End: Complemental strand, 948212 - 948097
Alignment:
Q  181 attagtgggtgtatttaatacttcacaaattttt-atgagggtatatttgtaaaaacattcaaaaaattacaacaactaataattgtattggttttgatg 279  Q
    |||||||| ||||||||||  ||| ||||||||| || |||||||||||| ||||| ||| ||||| ||  |  || ||||||||||||| ||||| |||    
T  948212 attagtggatgtatttaatgtttcgcaaattttttatcagggtatatttgaaaaaatatttaaaaagttttattaattaataattgtattagttttcatg 948113  T
Q  280 attttttgtttctttt 295  Q
     |||||| ||| ||||    
T  948112 tttttttttttgtttt 948097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 173 - 316
Target Start/End: Complemental strand, 31003652 - 31003510
Alignment:
Q  173 ttttcaatattagtgggtgtatttaatacttcacaaatttttatgagggtatatttgtaaaaacattcaaaaaattacaacaactaataattgtattggt 272  Q
    |||| |||||||| |  ||||||||||  || |||| ||| ||| | |||||||||||||||| ||||||||| |||| |  | |||| |||| ||||||    
T  31003652 tttttaatattagcgaatgtatttaatgtttaacaattttctataaaggtatatttgtaaaaatattcaaaaagttac-atgattaatgattgcattggt 31003554  T
Q  273 tttgatgattttttgtttcttttctcatataaaggaccggaggg 316  Q
    ||||||| ||||| |||| | |||| |||  ||||||| |||||    
T  31003553 tttgatgttttttggtttttcttcttataataaggacctgaggg 31003510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 222 - 285
Target Start/End: Complemental strand, 51120735 - 51120672
Alignment:
Q  222 tatatttgtaaaaacattcaaaaaattacaacaactaataattgtattggttttgatgattttt 285  Q
    |||||||||||||| ||| ||| ||||||||||| |||||||| ||||| ||||| || |||||    
T  51120735 tatatttgtaaaaatatttaaagaattacaacaattaataattatattgattttgttgtttttt 51120672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 202 - 272
Target Start/End: Original strand, 25130222 - 25130292
Alignment:
Q  202 ttcacaaatttttatgagggtatatttgtaaaaacattcaaaaaattacaacaactaataattgtattggt 272  Q
    ||||||| ||| ||||| |||||||||||||||  ||||||||| |||||| || |||||| || ||||||    
T  25130222 ttcacaattttctatgatggtatatttgtaaaagtattcaaaaatttacaataattaataactgcattggt 25130292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 90 - 124
Target Start/End: Complemental strand, 31003732 - 31003698
Alignment:
Q  90 ggtcctatttataagaaaaagtcacaacttttaag 124  Q
    ||||||||||||||||||| |||||||||||||||    
T  31003732 ggtcctatttataagaaaatgtcacaacttttaag 31003698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 192 - 287
Target Start/End: Original strand, 32800407 - 32800503
Alignment:
Q  192 tatttaatacttcacaaatttttatgagggtata--tttgtaaaaacattcaaaaaattacaacaactaataattgtattggttttgatgattttttg 287  Q
    ||||||||| ||||||||||| |||||| | |||  |||||||||||||||||||| | | ||||| ||||  || ||||| |||||||| |||||||    
T  32800407 tatttaatatttcacaaatttctatgagtggatacatttgtaaaaacattcaaaaagtga-aacaattaatgcttctattgattttgatgtttttttg 32800503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 91 - 166
Target Start/End: Complemental strand, 17988434 - 17988358
Alignment:
Q  91 gtcctatttataagaaaaagtcacaacttttaagat-catttattgcttaaaagacttttctagccctcgtttaatg 166  Q
    |||||| ||||||||||| ||||||||||||||| |  | |||||| ||||||||||||| || ||||  |||||||    
T  17988434 gtcctacttataagaaaatgtcacaacttttaaggtgtagttattgtttaaaagacttttttaccccttatttaatg 17988358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 124; Significance: 1e-63; HSPs: 13)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 95 - 317
Target Start/End: Complemental strand, 25376991 - 25376768
Alignment:
Q  95 tatttataagaaaaagtcacaacttttaagatc-atttattgcttaaaagacttttctagccctcgtttaatgtaggtattttcaatattagtgggtgta 193  Q
    |||||| ||||||||||||||  ||||||| |  | |||||| |||||||||||||||| ||||| |||||||| | | ||||||||||| ||| || ||    
T  25376991 tatttacaagaaaaagtcacagattttaaggtataattattgtttaaaagacttttctaaccctcatttaatgttgatcttttcaatatttgtgagtata 25376892  T
Q  194 tttaatacttcacaaatttttatgagggtatatttgtaaaaacattcaaaaaattacaacaactaataattgtattggttttgatgattttttgtttctt 293  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||| |||||    
T  25376891 tttaatacttcacaaatttttaagagggtatatttgtaaaaacattcaaaaaattacaacaactaatgattgtcttggttttgatgattttttgcttctt 25376792  T
Q  294 ttctcatataaaggaccggaggga 317  Q
    |||| |||  ||||| ||||||||    
T  25376791 ttcttatacgaaggatcggaggga 25376768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 130 - 321
Target Start/End: Complemental strand, 31707460 - 31707272
Alignment:
Q  130 ttattgcttaaaagacttttctagccctcgtttaatgtaggtattttcaatattagtgggtgtatttaatacttcacaaatttttatgagggtatatttg 229  Q
    |||||||||| |||||||||||| ||||  ||||||||  || |||| |||||||||||||||||   || ||||| |||||||||||||||||||||||    
T  31707460 ttattgcttagaagacttttctaccccttatttaatgtttgtctttttaatattagtgggtgtat---atgcttcataaatttttatgagggtatatttg 31707364  T
Q  230 taaaaacattcaaaaaattacaacaactaataattgtattggttttgatgattttttgtttcttttctcatataaaggaccggagggagtaa 321  Q
    |||||| ||||||||| |||||  || |||| | ||||||||||||| || ||||| |||| | |||| |||| ||||||| ||||||||||    
T  31707363 taaaaatattcaaaaagttacactaattaatgagtgtattggttttgttgttttttggtttttcttcttatattaaggaccagagggagtaa 31707272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 94 - 318
Target Start/End: Original strand, 18838752 - 18838977
Alignment:
Q  94 ctatttataagaaaaagtcacaacttttaagatc-atttattgcttaaaagacttttctagccctcgtttaatgtaggtattttcaatattagtgggtgt 192  Q
    |||||||| |||||| |||| |||||||||| |  | |||||| |||||||||||||||| ||||| |||||||    | |||| |||||||||||||||    
T  18838752 ctatttatgagaaaatgtcataacttttaaggtataattattgtttaaaagacttttcta-ccctcatttaatgattatctttttaatattagtgggtgt 18838850  T
Q  193 atttaatacttcacaaatttttatgagggtatatttgtaaaaa-cattcaaaaaattacaacaactaataattgtattggttttgatgattttttgtttc 291  Q
    |||||||  ||||||| ||||||||||||||||||||||||||  ||||||||| ||| |  || |||| |||  ||||||||||||| ||||| ||||     
T  18838851 atttaatgtttcacaattttttatgagggtatatttgtaaaaataattcaaaaatttatattaattaatgattacattggttttgatgttttttggtttt 18838950  T
Q  292 ttttctcatataaaggaccggagggag 318  Q
     ||||| |||  |||||||||||||||    
T  18838951 atttcttataataaggaccggagggag 18838977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 138 - 321
Target Start/End: Original strand, 25382395 - 25382578
Alignment:
Q  138 taaaagacttttctagccctcgtttaatgtaggtattttcaatattagtgggtgtatttaatacttcacaaatttttatgagggtatatttgtaaaaaca 237  Q
    |||| ||||||| |||||||  ||||||||  || |||| | |||||||| || | |||||||||||||||||||| || ||||||||||||| ||||||    
T  25382395 taaatgacttttgtagcccttatttaatgttagtctttttagtattagtgagtatttttaatacttcacaaattttcataagggtatatttgt-aaaaca 25382493  T
Q  238 ttcaaaaaattacaacaactaataattgtattggttttgatgatttttt-gtttcttttctcatataaaggaccggagggagtaa 321  Q
    ||||||||||| | | || |||| ||||| ||| |||||||| |||||| |||| | |||| |||| || |||||||||| ||||    
T  25382494 ttcaaaaaattgccataattaattattgtcttgattttgatgtttttttggtttttcttcttatattaaagaccggagggtgtaa 25382578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 90 - 188
Target Start/End: Original strand, 54863920 - 54864019
Alignment:
Q  90 ggtcctatttataagaaaaagtcacaacttttaagat-catttattgcttaaaagacttttctagccctcgtttaatgtaggtattttcaatattagtgg 188  Q
    ||||||||||||||||||||||||||||||||||| | ||||||||| ||||||| |||||||| | ||| |||||||| | | ||||||||||||||||    
T  54863920 ggtcctatttataagaaaaagtcacaacttttaaggtacatttattgtttaaaaggcttttctaactctcatttaatgttgatcttttcaatattagtgg 54864019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 93 - 286
Target Start/End: Original strand, 16572251 - 16572442
Alignment:
Q  93 cctatttataagaaaaagtcacaacttttaagatc-atttattgcttaaaagacttttctagccctcgtttaatgtaggtattttcaatattagtgggtg 191  Q
    |||||||||||||||| ||||||||||||||| |  | ||||||||||| ||| |||| || ||||| |||||||   ||||||| |||||||||   ||    
T  16572251 cctatttataagaaaatgtcacaacttttaaggtgtagttattgcttaacagaattttttatccctcatttaatgactgtatttttaatattagt---tg 16572347  T
Q  192 tatttaatacttcacaaatttttatgagggtatatttgtaaaaacattcaaaaaattacaacaactaataattgtattggttttgatgatttttt 286  Q
    ||||||||| |||||||  || ||| | ||||||||| ||||||  || ||||| ||||||||| |||  || | ||||||||||||| ||||||    
T  16572348 tatttaatatttcacaatattctataatggtatatttttaaaaatgtttaaaaagttacaacaattaacgatagcattggttttgatgttttttt 16572442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 192 - 278
Target Start/End: Complemental strand, 34326228 - 34326143
Alignment:
Q  192 tatttaatacttcacaaatttttatgagggtatatttgtaaaaacattcaaaaaattacaacaactaataattgtattggttttgat 278  Q
    ||||||||| |||||| |||||||||| | ||||||||| |||||||| ||||| ||| |||||||||| ||||| ||| |||||||    
T  34326228 tatttaatatttcacatatttttatgatgatatatttgt-aaaacatttaaaaagttagaacaactaatgattgtcttgattttgat 34326143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 173 - 243
Target Start/End: Complemental strand, 42312469 - 42312399
Alignment:
Q  173 ttttcaatattagtgggtgtatttaatacttcacaaatttttatgagggtatatttgtaaaaacattcaaa 243  Q
    |||| |||||||| || | ||||| || |||||||| |||||||||||||||||||||||||| |||||||    
T  42312469 tttttaatattagaggatatattttatgcttcacaattttttatgagggtatatttgtaaaaatattcaaa 42312399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 173 - 273
Target Start/End: Original strand, 30615196 - 30615296
Alignment:
Q  173 ttttcaatattagtgggtgtatttaatacttcacaaatttttatgagggtatatttgtaaaaacattcaaaaaattacaacaactaataattgtattggt 272  Q
    |||| ||||||||| | ||||||||||  |||| || ||||||| | ||| |||||||||||| ||| ||||| |||||||||  |||||||| ||||||    
T  30615196 tttttaatattagtagatgtatttaatgtttcataattttttataaaggtgtatttgtaaaaatatttaaaaagttacaacaatgaataattgcattggt 30615295  T
Q  273 t 273  Q
    |    
T  30615296 t 30615296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 95 - 285
Target Start/End: Complemental strand, 47231718 - 47231529
Alignment:
Q  95 tatttataagaaaaagtcacaacttttaagatc-atttattgcttaaaagacttttctagccctcgtttaatgtaggtattttcaatattagtgggtgta 193  Q
    |||||||||||||| ||||  |||||||||||  |||||||| |||||||| |||| || | ||  |||||||| | | |||  |||||||    |||||    
T  47231718 tatttataagaaaatgtcaatacttttaagatatatttattgtttaaaagatttttttacctcttatttaatgttg-tctttataatattaacaagtgta 47231620  T
Q  194 tttaatacttcacaaatttttatgagggtatatttgtaaaaacattcaaaaaattacaacaactaataattgtattggttttgatgattttt 285  Q
    ||||||  ||||||| ||||||||| |||||| ||||||||| ||||||||| |||||  || |||| |||  ||||||||| ||| |||||    
T  47231619 tttaatgattcacaactttttatga-ggtataattgtaaaaatattcaaaaagttacattaattaatgattccattggttttcatgtttttt 47231529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 190 - 289
Target Start/End: Complemental strand, 6087944 - 6087845
Alignment:
Q  190 tgtatttaatacttcacaaatttttatgagggtatatttgtaaaaacattcaaaaaattacaacaactaataattgtattggttttgatgattttttgtt 289  Q
    ||||||||||| ||||||| ||| ||||   ||||||| || |||||||||||||| ||| |||||  ||||| |  ||||||||||||| ||| |||||    
T  6087944 tgtatttaatatttcacaattttctatggaagtatattggttaaaacattcaaaaagttataacaataaataacttcattggttttgatgttttattgtt 6087845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 190 - 245
Target Start/End: Complemental strand, 27184327 - 27184272
Alignment:
Q  190 tgtatttaatacttcacaaatttttatgagggtatatttgtaaaaacattcaaaaa 245  Q
    |||||||||||||||||||||||| |||| ||| ||||| |||| | |||||||||    
T  27184327 tgtatttaatacttcacaaattttaatgatggtttatttttaaagatattcaaaaa 27184272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 173 - 234
Target Start/End: Original strand, 27032218 - 27032279
Alignment:
Q  173 ttttcaatattagtgggtgtatttaatacttcacaaatttttatgagggtatatttgtaaaa 234  Q
    |||| |||||||||   ||||||||||| ||||||| ||| ||| |||||||||||||||||    
T  27032218 tttttaatattagtaaatgtatttaatatttcacaactttctataagggtatatttgtaaaa 27032279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 124; Significance: 1e-63; HSPs: 26)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 92 - 317
Target Start/End: Complemental strand, 14200516 - 14200290
Alignment:
Q  92 tcctatttataagaaaaagtcacaacttttaagat-catttattgcttaaaagacttttctagccctcgtttaatgtaggtattttcaatattagtgggt 190  Q
    ||||||||||||||||| ||||||||||||||||| ||||||||  ||||||||||||| || ||||| |||||||| | | ||||||||||||||| ||    
T  14200516 tcctatttataagaaaa-gtcacaacttttaagatacatttattatttaaaagacttttttaaccctcatttaatgttgatcttttcaatattagtgagt 14200418  T
Q  191 gtatttaatacttcacaaatttttatgagggtatatttgtaaaaacattcaaaaaattacaacaactaataattgtattggttttgatgatt-ttttgtt 289  Q
     ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  | ||||||| ||||| ||||||||||||||| |||| ||    
T  14200417 atatttaatacttcacaaatttttatgagggtatatttgtaaaaacattcaaaaaattaggataactaatgattgtcttggttttgatgatttttttatt 14200318  T
Q  290 tcttttctcatataaaggaccggaggga 317  Q
    ||| |||| ||| |||||||| ||||||    
T  14200317 tctcttcttataaaaaggaccagaggga 14200290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 113; E-Value: 4e-57
Query Start/End: Original strand, 94 - 297
Target Start/End: Original strand, 7011095 - 7011296
Alignment:
Q  94 ctatttataagaaaaagtcacaacttttaagat-catttattgcttaaaagacttttctagccctcgtttaatgtaggtattttcaatattagtgggtgt 192  Q
    ||||||||||||||||||||||| ||||||||| ||||||||| |||||||||||||||| ||||| |||||| |     |||||||||||||||||| |    
T  7011095 ctatttataagaaaaagtcacaatttttaagatacatttattgtttaaaagacttttctaaccctcatttaatatc----ttttcaatattagtgggtat 7011190  T
Q  193 atttaatacttcacaaatttttatgagggtatatttgtaaaaacattc-aaaaaattacaacaactaataattgtattggttttgatgattttttgtttc 291  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||| |||||||| ||||||||| | ||||| ||| ||||||||||||||| |||     
T  7011191 atttaatacttcacaaatttttatgagagtatatttgtaaaaacattcaaaaaaattgcaacaactactgattgtcttgattttgatgattttttatttt 7011290  T
Q  292 ttttct 297  Q
    ||||||    
T  7011291 ttttct 7011296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 111; E-Value: 6e-56
Query Start/End: Original strand, 99 - 320
Target Start/End: Original strand, 32872346 - 32872568
Alignment:
Q  99 tataagaaaaagtcacaacttttaagat-catttattgcttaaaagacttttctagccctcgtttaatgtaggtattttcaatattagtgggtgtattta 197  Q
    |||||||||||||    ||||||||| | ||||||||| |||||||||||||| | ||||  ||||||||  ||  ||| ||||||||||||| ||||||    
T  32872346 tataagaaaaagttgtgacttttaagttacatttattgtttaaaagacttttccaaccctaatttaatgtttgtccttttaatattagtgggtatattta 32872445  T
Q  198 atacttcacaaatttttatgagggtatatttgtaaaaacattcaaaaaattacaacaactaataattgtattggttttgatgattttttgtttcttttct 297  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||| ||||| |||||||||||||| ||| |||||||||||    
T  32872446 atacttcacaattttttatgagggtatatttgtaaaaacattcaaaaaattacaaccactaatgattgtcttggttttgatgatctttggtttcttttct 32872545  T
Q  298 catataaaggaccggagggagta 320  Q
     ||| |||||| |||| ||||||    
T  32872546 tataaaaaggatcggatggagta 32872568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 96; E-Value: 6e-47
Query Start/End: Original strand, 131 - 321
Target Start/End: Complemental strand, 45724028 - 45723837
Alignment:
Q  131 tattgcttaaaagacttttctagccc-tcgtttaatgtaggtattttcaatattagtgggtgtatttaatacttcacaaatttttatgagggtatatttg 229  Q
    ||||| |||||||| |||| |||||| || |||||| | ||| |||||||||||||| ||| |||||||||||| | |||||||||||| | ||||||||    
T  45724028 tattgtttaaaagatttttttagcccctcatttaatattggtcttttcaatattagtaggtatatttaatactttataaatttttatgaagatatatttg 45723929  T
Q  230 taaaaacattcaaaaaattacaacaactaataattgtattggttttgatgattttttgtttcttttctcatataaaggaccggagggagtaa 321  Q
    ||| |||||||||||||||| | |||||||| ||||| |||||||||||||||||| ||||||||||| |||||||||| | ||||||||||    
T  45723928 taacaacattcaaaaaattagagcaactaatgattgttttggttttgatgatttttggtttcttttcttatataaaggatcagagggagtaa 45723837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 191 - 320
Target Start/End: Original strand, 34309310 - 34309439
Alignment:
Q  191 gtatttaatacttcacaaatttttatgagggtatatttgtaaaaacattcaaaaaattacaacaactaataattgtattggttttgatgattttttgttt 290  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||  |||||| ||||| ||| |||||||||||||| ||||    
T  34309310 gtatttaatacttcacaaatttttatgagggtatatttgtaaaagcattcaaaaaattacaatcactaatgattgtcttgattttgatgatttttggttt 34309409  T
Q  291 cttttctcatataaaggaccggagggagta 320  Q
     |||||| ||| ||||||||| ||||||||    
T  34309410 attttcttataaaaaggaccgaagggagta 34309439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 91 - 290
Target Start/End: Original strand, 38496470 - 38496670
Alignment:
Q  91 gtcctatttataagaaaaagtcacaacttttaagatc-atttattgcttaaaagacttttctagccctcgtttaatgtaggtattttcaatattagtggg 189  Q
    |||||||||||||||||| |||| || ||||||| |  | |||||| ||||||||| |||||| ||||  ||||| ||  ||||||| ||||||||| ||    
T  38496470 gtcctatttataagaaaatgtcagaatttttaaggtatagttattgtttaaaagacctttctaccccttatttaacgtttgtatttttaatattagtagg 38496569  T
Q  190 tgtatttaatacttcacaaatttttatgagggtatatttgtaaaaacattcaaaaaattacaacaactaataattgtattggttttgatgattttttgtt 289  Q
    ||||||||||  ||| || |||||||| |||||||||||||||||| ||||||||| |||||  || |||| || | ||||||||||||| ||||| |||    
T  38496570 tgtatttaatgtttcgcacatttttatcagggtatatttgtaaaaatattcaaaaagttacactaattaatgatagcattggttttgatgttttttggtt 38496669  T
Q  290 t 290  Q
    |    
T  38496670 t 38496670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 90 - 290
Target Start/End: Original strand, 38214109 - 38214310
Alignment:
Q  90 ggtcctatttataagaaaaagtcacaacttttaagatc-atttattgcttaaaagacttttctagccctcgtttaatgtaggtattttcaatattagtgg 188  Q
    ||||| |||||||||||||| |||||||||||||| |  |||||||| ||||||||||||| || ||||| ||||||     | |||| |||||||||      
T  38214109 ggtccaatttataagaaaaattcacaacttttaaggtgtatttattgtttaaaagacttttatatccctcatttaatacttctctttttaatattagtat 38214208  T
Q  189 gtgtatttaatacttcacaaatttttatgagggtatatttgtaaaaacattcaaaaaattacaacaactaataattgtattggttttgatgattttttgt 288  Q
    |||||||||||  ||||||| ||||||||||| |||||||||||||| ||||||||| || |   ||  ||| |||||||||||||||||| ||||| ||    
T  38214209 gtgtatttaatgtttcacaattttttatgaggatatatttgtaaaaatattcaaaaagtttctttaatcaatgattgtattggttttgatgttttttggt 38214308  T
Q  289 tt 290  Q
    ||    
T  38214309 tt 38214310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 98 - 317
Target Start/End: Original strand, 3269920 - 3270140
Alignment:
Q  98 ttataagaaaaagtcacaacttttaagatc-atttattgcttaaaagacttttctagccctcgtttaatgtaggtattttcaatattagtgggtgtattt 196  Q
    |||||||||||  |||||||||||||| |  | ||||||| ||||||||||||||| ||||  ||||||||   | |||| ||||||| | |||||||||    
T  3269920 ttataagaaaatatcacaacttttaaggtgtagttattgcctaaaagacttttctaccccttatttaatgtttttgtttttaatattaataggtgtattt 3270019  T
Q  197 aatacttcacaaatttttatgagggtatatttgtaaaaacattcaaaaaattacaacaactaataattgtattggttttgatgattttttgtttcttttc 296  Q
    ||  |||||||| ||||||| |||||||||||||||||| ||||||||| ||| |  || ||||| ||| |||| |||||||| ||||| |||| | |||    
T  3270020 aaggcttcacaactttttataagggtatatttgtaaaaatattcaaaaagttatactaattaatagttgcattgattttgatgttttttggtttttcttc 3270119  T
Q  297 tcatataaaggaccggaggga 317  Q
    | |||  |||||||| |||||    
T  3270120 ttataataaggaccgaaggga 3270140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 99 - 307
Target Start/End: Original strand, 31404951 - 31405167
Alignment:
Q  99 tataagaaaaagtcacaacttttaagat-catttattgcttaaaagacttttctagccctcgtttaatgtaggtattttcaatattagtgggtgtattta 197  Q
    ||||||||||||||| |  ||||||| | ||||||||  |||||||||||||||| ||||| |||||| |  || |||| ||||||||||  | ||||||    
T  31404951 tataagaaaaagtcatat-ttttaaggtacatttattttttaaaagacttttctaaccctcatttaatatttgtctttttaatattagtgcatatattta 31405049  T
Q  198 atacttcacaaatttttatgagggtatatttgtaaaaacattcaaaaaa--------ttacaacaactaataattgtattggttttgatgattttttgtt 289  Q
    |||||||| |||||| ||||||| |||||||||||||| ||||||||||        ||||||| | |||||||||| |||||||||| |||||||  ||    
T  31405050 atacttcataaatttctatgaggatatatttgtaaaaatattcaaaaaaattacaatttacaaccattaataattgtcttggttttgaagatttttaatt 31405149  T
Q  290 tcttttctcatataaagg 307  Q
    |||||||| ||| |||||    
T  31405150 tcttttcttataaaaagg 31405167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 90 - 284
Target Start/End: Original strand, 40503871 - 40504066
Alignment:
Q  90 ggtcctatttataagaaaaagtcacaacttttaagatc-atttattgcttaaaagacttttctagccctcgtttaatgtaggtattttcaatattagtgg 188  Q
    ||||| ||||||||||||| ||||||||||||||| |  | |||||| |||||| |||||| || ||||  |||| |||  || |||| ||||||||| |    
T  40503871 ggtcccatttataagaaaatgtcacaacttttaaggtgtaattattgtttaaaaaacttttataccccttatttattgtttgtctttttaatattagtag 40503970  T
Q  189 gtgtatttaatacttcacaaatttttatgagggtatatttgtaaaaacattcaaaaaattacaacaactaataattgtattggttttgatgatttt 284  Q
    ||| ||||||| |||||||| ||||||||||||||||| |||||||| |||||||| ||||||  || |||| |||  |||| |||||||| ||||    
T  40503971 gtgcatttaatgcttcacaactttttatgagggtatatctgtaaaaatattcaaaagattacactaattaatgattacattgattttgatgttttt 40504066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 90 - 320
Target Start/End: Original strand, 16781258 - 16781488
Alignment:
Q  90 ggtcctatttataagaaaaagtcacaacttttaagatcatttattgcttaaaagacttttctagccctcgtttaatgtaggtattttcaatattagtggg 189  Q
    |||| |||||||||||||||||||||||||| | |   | ||| || ||||||||||||||||  |||   |||||||  || |||  ||||||||| ||    
T  16781258 ggtcatatttataagaaaaagtcacaactttaaggtataattaatgtttaaaagacttttctacgccttagttaatgtttgtctttgtaatattagtagg 16781357  T
Q  190 tgtatttaatacttcacaaatttttatgagggtatatttgtaaaaacattcaaaaaattacaacaactaataattgtattggttttgatgattttttgtt 289  Q
    ||||||||||  ||||| | |||| ||||||||||||||||| ||  ||||||||||||| |  || |||| |||  ||||||||||||| | ||| |||    
T  16781358 tgtatttaatgtttcaccatttttaatgagggtatatttgtataattattcaaaaaattagactaattaatgattacattggttttgatgttatttggtt 16781457  T
Q  290 tcttttctcatataaaggaccggagggagta 320  Q
    | | |||| |||| |||||||||||||||||    
T  16781458 tttcttcttatattaaggaccggagggagta 16781488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 98 - 290
Target Start/End: Original strand, 3268802 - 3268995
Alignment:
Q  98 ttataagaaaaagtcacaacttttaagatc-atttattgcttaaaagacttttctagccctcgtttaatgtaggtattttcaatattagtgggtgtattt 196  Q
    |||||||||||  |||||||||||||| |  | ||||||| ||||||||||||||| ||||  ||||||||   | |||| ||||||| | |||||||||    
T  3268802 ttataagaaaatatcacaacttttaaggtgtagttattgcctaaaagacttttctaccccttatttaatgtttttgtttttaatattaataggtgtattt 3268901  T
Q  197 aatacttcacaaatttttatgagggtatatttgtaaaaacattcaaaaaattacaacaactaataattgtattggttttgatgattttttgttt 290  Q
    ||  |||||||| ||||||| |||||||||||||||||| ||||||||| ||| |  || ||||| ||| |||| |||||||| ||||| ||||    
T  3268902 aaggcttcacaactttttataagggtatatttgtaaaaatattcaaaaagttatactaattaatagttgcattgattttgatgttttttggttt 3268995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 98 - 290
Target Start/End: Original strand, 3269361 - 3269554
Alignment:
Q  98 ttataagaaaaagtcacaacttttaagatc-atttattgcttaaaagacttttctagccctcgtttaatgtaggtattttcaatattagtgggtgtattt 196  Q
    |||||||||||  |||||||||||||| |  | ||||||| ||||||||||||||| ||||  ||||||||   | |||| ||||||| | |||||||||    
T  3269361 ttataagaaaatatcacaacttttaaggtgtagttattgcctaaaagacttttctaccccttatttaatgtttttgtttttaatattaataggtgtattt 3269460  T
Q  197 aatacttcacaaatttttatgagggtatatttgtaaaaacattcaaaaaattacaacaactaataattgtattggttttgatgattttttgttt 290  Q
    ||  |||||||| ||||||| |||||||||||||||||| ||||||||| ||| |  || ||||| ||| |||| |||||||| ||||| ||||    
T  3269461 aaggcttcacaactttttataagggtatatttgtaaaaatattcaaaaagttatactaattaatagttgcattgattttgatgttttttggttt 3269554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 90 - 245
Target Start/End: Complemental strand, 39063746 - 39063590
Alignment:
Q  90 ggtcctatttataagaaaaagtcacaacttttaagatc-atttattgcttaaaagacttttctagccctcgtttaatgtaggtattttcaatattagtgg 188  Q
    ||||| |||||||||||||| |||||||||||||| |  |||||||| ||||||||||||| ||   ||| ||||||     | |||| ||||||||||     
T  39063746 ggtccaatttataagaaaaattcacaacttttaaggtgtatttattgtttaaaagacttttatattgctcatttaatacttctctttttaatattagtgt 39063647  T
Q  189 gtgtatttaatacttcacaaatttttatgagggtatatttgtaaaaacattcaaaaa 245  Q
    |||||||||||  ||||||| ||||||||||| |||||||||||||| |||||||||    
T  39063646 gtgtatttaatgtttcacaattttttatgaggttatatttgtaaaaatattcaaaaa 39063590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 90 - 275
Target Start/End: Original strand, 19285876 - 19286062
Alignment:
Q  90 ggtcctatttataagaaaaagtcacaacttttaagatc-atttattgcttaaaagacttttctagccctcgtttaatgtaggtattttcaatattagtgg 188  Q
    ||||||||||||||| ||  ||||||| ||||||| |  | ||||||| |||||||||||| || || || |||||| |  || |||||||||||||||     
T  19285876 ggtcctatttataagtaattgtcacaagttttaaggtgtagttattgcataaaagacttttatatccttcatttaatatttgtcttttcaatattagtga 19285975  T
Q  189 gtgtatttaatacttcacaaatttttatgagggtatatttgtaaaaacattcaaaaaattacaacaactaataattgtattggtttt 275  Q
     ||||||||||  ||||||| ||| |||  || |||||||||||||  ||| ||||| ||  ||||| |||||||||||||||||||    
T  19285976 atgtatttaatggttcacaactttctatagggatatatttgtaaaattatttaaaaagttgtaacaattaataattgtattggtttt 19286062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 92 - 249
Target Start/End: Original strand, 40442716 - 40442874
Alignment:
Q  92 tcctatttataagaaaaagtcacaacttttaagat-catttattgcttaaaagacttttctagccctcgtttaatgtaggtattttcaatattagtgggt 190  Q
    ||||||||||||||||| ||||||||||||||| |  | |||||| |||||| |||||| || ||||  |||| |||   | |||| ||||||||| |||    
T  40442716 tcctatttataagaaaatgtcacaacttttaaggtgtaattattgtttaaaaaacttttataccccttatttattgtttatctttttaatattagtaggt 40442815  T
Q  191 gtatttaatacttcacaaatttttatgagggtatatttgtaaaaacattcaaaaaatta 249  Q
    | ||||||| |||||||| ||||||| ||||||||| | |||||| |||||||| ||||    
T  40442816 gcatttaatgcttcacaactttttataagggtatatctataaaaatattcaaaagatta 40442874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 173 - 320
Target Start/End: Original strand, 21794916 - 21795064
Alignment:
Q  173 ttttcaatattagtgggtgtatttaatacttcacaaatttt-tatgagggtatatttgtaaaaacattcaaaaaattacaacaactaataattgtattgg 271  Q
    |||| |||||||||| |||||||||||  ||||||| |||| |||||||||||||||||||||| ||||||||| || |   ||  ||| ||| ||||||    
T  21794916 tttttaatattagtgtgtgtatttaatgtttcacaatttttttatgagggtatatttgtaaaaatattcaaaaagtttctttaatcaatgattatattgg 21795015  T
Q  272 ttttgatgattttttgtttcttttctcatataaaggaccggagggagta 320  Q
    |||||||| |||||  |||  ||||| |||  |||||||||||||||||    
T  21795016 ttttgatgttttttgattttgtttcttataataaggaccggagggagta 21795064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 221 - 320
Target Start/End: Original strand, 21229611 - 21229710
Alignment:
Q  221 gtatatttgtaaaaacattcaaaaaattacaacaactaataattgtattggttttgatgattttttgtttcttttctcatataaaggaccggagggagta 320  Q
    ||||||||||||||| ||||||||| |||||| || |||| |||| ||||||||| ||||||||| |||| | |||| |||  |||||||||| ||||||    
T  21229611 gtatatttgtaaaaatattcaaaaagttacaataattaatgattgcattggttttaatgatttttggtttttcttcttataataaggaccggatggagta 21229710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 189 - 290
Target Start/End: Original strand, 40664331 - 40664432
Alignment:
Q  189 gtgtatttaatacttcacaaatttttatgagggtatatttgtaaaaacattcaaaaaattacaacaactaataattgtattggttttgatgattttttgt 288  Q
    |||||||||||  ||||||| |||||| |||||||||||||||| || ||||||||| || |   || |||| |||||||||||||||||| ||||| ||    
T  40664331 gtgtatttaatgtttcacaattttttacgagggtatatttgtaagaatattcaaaaagtttctttaattaatgattgtattggttttgatgttttttggt 40664430  T
Q  289 tt 290  Q
    ||    
T  40664431 tt 40664432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 201 - 290
Target Start/End: Original strand, 13027910 - 13027998
Alignment:
Q  201 cttcacaaatttttatgagggtatatttgtaaaaacattcaaaaaattacaacaactaataattgtattggttttgatgattttttgttt 290  Q
    |||||||||||| ||||||| |||||||||||||| ||||||||| || ||||||  ||||||||   ||||||||| ||||||| ||||    
T  13027910 cttcacaaatttctatgaggatatatttgtaaaaatattcaaaaagttgcaacaatgaataattg-cgtggttttgacgatttttggttt 13027998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 94 - 149
Target Start/End: Complemental strand, 3711985 - 3711930
Alignment:
Q  94 ctatttataagaaaaagtcacaacttttaagatcatttattgcttaaaagactttt 149  Q
    ||||||||||||||| |||||||||||||||   | |||||| |||||||||||||    
T  3711985 ctatttataagaaaatgtcacaacttttaaggatagttattgtttaaaagactttt 3711930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 105 - 188
Target Start/End: Original strand, 34262721 - 34262804
Alignment:
Q  105 aaaaagtcacaacttttaagatcatttattgcttaaaagacttttctagccctcgtttaatgtaggtattttcaatattagtgg 188  Q
    ||||||| |||| ||| | | |||||||||| |||||||||||||||| |||||  |||||||  || |||| |||||||||||    
T  34262721 aaaaagtaacaattttaaggttcatttattgtttaaaagacttttctaaccctcaattaatgtttgtctttttaatattagtgg 34262804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 105 - 274
Target Start/End: Complemental strand, 2287654 - 2287486
Alignment:
Q  105 aaaaagtcacaacttttaagatc-atttattgcttaaaagacttttctagccctcgtttaatgtaggtattttcaatattagtgggtgtatttaatactt 203  Q
    ||||||||||||||||||| ||  |||||||  ||||||||||||| || || ||||||||| |   | |||| ||||||||| | | ||||||||| ||    
T  2287654 aaaaagtcacaacttttaaaatatatttatttgttaaaagactttt-taaccttcgtttaatatttttttttttaatattagtag-tatatttaatattt 2287557  T
Q  204 cacaaatttttatgagggtatatttgtaaaaacattcaaaaaattacaacaactaataattgtattggttt 274  Q
     ||||||||  ||||  ||||| || |||||||||||||||  || |||| | |||| ||||| |||||||    
T  2287556 tacaaatttcgatgaaagtataattataaaaacattcaaaatgttgcaactattaattattgtcttggttt 2287486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 173 - 235
Target Start/End: Complemental strand, 31365109 - 31365047
Alignment:
Q  173 ttttcaatattagtgggtgtatttaatacttcacaaatttttatgagggtatatttgtaaaaa 235  Q
    |||| ||||||||||| ||||||||||| |||||||  || ||| || |||||||||||||||    
T  31365109 tttttaatattagtggatgtatttaatatttcacaacattctataagtgtatatttgtaaaaa 31365047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 98 - 163
Target Start/End: Complemental strand, 9045699 - 9045634
Alignment:
Q  98 ttataagaaaaagtcacaacttttaagatcatttattgcttaaaagacttttctagccctcgttta 163  Q
    ||||||||||| |||||||||||||||   | |||||| |||||||| ||||||| ||||| ||||    
T  9045699 ttataagaaaatgtcacaacttttaagtataattattgtttaaaagaattttctatccctctttta 9045634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 173 - 246
Target Start/End: Complemental strand, 44173707 - 44173634
Alignment:
Q  173 ttttcaatattagtgggtgtatttaatacttcacaaatttttatgagggtatatttgtaaaaacattcaaaaaa 246  Q
    |||| ||||||||||  | || ||||||||| ||||| ||||  |||||||||||| |||||||||| ||||||    
T  44173707 tttttaatattagtgaatatagttaatactttacaaaattttccgagggtatatttctaaaaacatttaaaaaa 44173634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 123; Significance: 4e-63; HSPs: 13)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 123; E-Value: 4e-63
Query Start/End: Original strand, 102 - 320
Target Start/End: Original strand, 6657887 - 6658104
Alignment:
Q  102 aagaaaaagtcacaacttttaagatcatttattgcttaaaagacttttctagccctcgtttaatgtaggtattttcaatattagtgggtgtatttaatac 201  Q
    ||||||||||||||||||| | |  ||||||||| ||||| |||||||||| ||||| ||||||||  || |||| ||||||||||||| ||||||||||    
T  6657887 aagaaaaagtcacaactttaaggtacatttattgtttaaatgacttttctaaccctcatttaatgtttgtctttttaatattagtgggtatatttaatac 6657986  T
Q  202 ttcacaaatttttatgagggtatatttgtaaaaacattcaaaaaattacaacaactaataattgtattggttttgatgattttttgtttcttttctcata 301  Q
    |||||||||||||||||||||||||||||||| ||||| ||||||||||||| |||||| |||||   |||||||||||||||| ||||||||||| |||    
T  6657987 ttcacaaatttttatgagggtatatttgtaaatacatt-aaaaaattacaaccactaatgattgtcaaggttttgatgatttttggtttcttttcttata 6658085  T
Q  302 taaaggaccggagggagta 320  Q
     ||||||||||||||||||    
T  6658086 aaaaggaccggagggagta 6658104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 90 - 320
Target Start/End: Original strand, 19780227 - 19780458
Alignment:
Q  90 ggtcctatttataagaaaaagtcacaacttttaagatc-atttattgcttaaaagacttttctagccctcgtttaatgtaggtattttcaatattagtgg 188  Q
    |||||||| |||||||||||||  |||||||||||||  |||||||| |||||||||||||||| ||||| ||||||||   | ||||||| ||||||||    
T  19780227 ggtcctatatataagaaaaagtttcaacttttaagatatatttattgtttaaaagacttttctaaccctcatttaatgtttctcttttcaaaattagtgg 19780326  T
Q  189 gtgtatttaatacttcacaaatttttatgagggtatatttgtaaaaacattcaaaaaattacaacaactaataattgtattggttttgatgattttttgt 288  Q
    || ||||||||||||||||||||| ||    |||||||||||||||||||| |||||||||||| ||||||| ||| | |||||||||||||||| |  |    
T  19780327 gtatatttaatacttcacaaatttataatgcggtatatttgtaaaaacattaaaaaaattacaataactaatgattatcttggttttgatgatttatgat 19780426  T
Q  289 ttcttttctcatataaaggaccggagggagta 320  Q
    ||||||||| ||||||||||||| ||||||||    
T  19780427 ttcttttcttatataaaggaccgaagggagta 19780458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 90 - 320
Target Start/End: Original strand, 180336 - 180567
Alignment:
Q  90 ggtcctatttataagaaaaagtcacaacttttaagatc-atttattgcttaaaagacttttctagccctcgtttaatgtaggtattttcaatattagtgg 188  Q
    |||||||||||||||||||  |||||| |||||||||  | |||||||||||||||||||| || ||||  ||||||||  || |||| ||||||||| |    
T  180336 ggtcctatttataagaaaatatcacaatttttaagatgtagttattgcttaaaagacttttataccccttatttaatgtttgtctttttaatattagtcg 180435  T
Q  189 gtgtatttaatacttcacaaatttttatgagggtatatttgtaaaaacattcaaaaaattacaacaactaataattgtattggttttgatgattttttgt 288  Q
     |||||||||  ||||| || ||||||| |||||||||||||||| | ||||||||| |||||  || |||| | |||||||||||||||| ||||| ||    
T  180436 atgtatttaacgcttcaaaattttttataagggtatatttgtaaacatattcaaaaagttacactaattaatgagtgtattggttttgatgttttttggt 180535  T
Q  289 ttcttttctcatataaaggaccggagggagta 320  Q
    || | || | |||| |||||||||||| ||||    
T  180536 ttttctttttatattaaggaccggaggtagta 180567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 128 - 306
Target Start/End: Original strand, 9425527 - 9425706
Alignment:
Q  128 atttattgcttaaaagacttttctagccctcgtttaatgtaggtattttcaatattagtgggtgtatttaatacttcacaaatttttatgagggtatatt 227  Q
    |||||||| ||||||||||||| ||  |||| ||||||||   | ||||  ||| |||||  | |||||||||||||||| | ||||||||| |||||||    
T  9425527 atttattgtttaaaagacttttttaatcctcatttaatgtttatctttttcataatagtgaatatatttaatacttcacagaattttatgagagtatatt 9425626  T
Q  228 tgtaaaaacattc-aaaaaattacaacaactaataattgtattggttttgatgattttttgtttcttttctcatataaag 306  Q
    ||||||||||||| |||||||| ||||||||||| ||| | |||||||||||||||||| |||||| |||| ||| ||||    
T  9425627 tgtaaaaacattcaaaaaaattgcaacaactaatgattttcttggttttgatgatttttggtttctcttcttataaaaag 9425706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 90 - 260
Target Start/End: Complemental strand, 606769 - 606598
Alignment:
Q  90 ggtcctatttataagaaaaagtcacaacttttaagatc-atttattgcttaaaagacttttctagccctcgtttaatgtaggtattttcaatattagtgg 188  Q
    ||||||||||||||||||| ||||||||||||||| |  | |||| |||||||| ||||||  | ||||  |||||||   ||||||| |||||||||||    
T  606769 ggtcctatttataagaaaatgtcacaacttttaaggtgtacttatagcttaaaatactttttaatcccttatttaatgactgtatttttaatattagtgg 606670  T
Q  189 gtgtatttaatacttcacaaatttttatgagggtatatttgtaaaaacattcaaaaaattacaacaactaat 260  Q
     ||||||||||  |||||||  || ||| ||||||||||||||||||  || ||||| ||||||||| ||||    
T  606669 atgtatttaatgtttcacaacattctataagggtatatttgtaaaaatgtttaaaaagttacaacaattaat 606598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 131 - 278
Target Start/End: Complemental strand, 34837260 - 34837113
Alignment:
Q  131 tattgcttaaaagacttttctagccctcgtttaatgtaggtattttcaatattagtgggtgtatttaatacttcacaaatttttatgagggtatatttgt 230  Q
    ||||| ||||||||||||| || ||||  |||||||   || |||| ||||||| ||| |||||| ||| |||||||| |||||||||||||||||||||    
T  34837260 tattgtttaaaagacttttttaccccttatttaatgcttgtctttttaatattaatggatgtattgaatgcttcacaattttttatgagggtatatttgt 34837161  T
Q  231 aaaaacattcaaaaaattacaacaactaataattgtattggttttgat 278  Q
    ||||| ||||||||| |||||  || |||| | ||||||| |||||||    
T  34837160 aaaaatattcaaaaagttacactaattaatgagtgtattgattttgat 34837113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 192 - 287
Target Start/End: Complemental strand, 12143768 - 12143674
Alignment:
Q  192 tatttaatacttcacaaatttttatgagggtatatttgtaaaaacattcaaaaaattacaacaactaataattgtattggttttgatgattttttg 287  Q
    |||||||| |||||||| ||||||||||||| |||||||||||| ||||||||| |||||  || |||| |||| |||||||||||| ||||||||    
T  12143768 tatttaatgcttcacaattttttatgagggtgtatttgtaaaaatattcaaaaagttacattaattaatgattgcattggttttgat-attttttg 12143674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 189 - 321
Target Start/End: Original strand, 7926901 - 7927034
Alignment:
Q  189 gtgtatttaatacttcacaaatttttatgagggtatatttgtaaaaacattcaaaaaattacaacaactaataattgtattggttttgatgattttttg- 287  Q
    ||||||||||| |||||||| |||||||||||||||||||||||    ||||||||| ||| |  || ||||   |||||||||||||||| |||||||     
T  7926901 gtgtatttaatgcttcacaattttttatgagggtatatttgtaatcttattcaaaaagttatactaattaatgtgtgtattggttttgatgtttttttgt 7927000  T
Q  288 tttcttttctcatataaaggaccggagggagtaa 321  Q
    ||| |||||| |||  || |||||||||||||||    
T  7927001 tttattttcttataataaagaccggagggagtaa 7927034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 95 - 251
Target Start/End: Original strand, 1856752 - 1856908
Alignment:
Q  95 tatttataagaaaaagtcacaacttttaag-atcatttattgcttaaaagacttttctagccctcgtttaatgtaggtattttcaatattagtgggtgta 193  Q
    ||||||||| ||||  |||||||||||||| |||| |||||| |||||||||||||||| | ||| |||||| |   | |||| ||||||| |||  |||    
T  1856752 tatttataaaaaaatatcacaacttttaagtatcagttattgtttaaaagacttttctatctctcatttaatatttctctttttaatattaatggaagta 1856851  T
Q  194 tttaatacttcacaaatttttatgagggtatatttgtaaaaacattcaaaaaattaca 251  Q
    ||||||  || || | ||| |||||| ||||||||||||||| ||| |||||||||||    
T  1856852 tttaatgttttac-attttgtatgagagtatatttgtaaaaatatttaaaaaattaca 1856908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 221 - 287
Target Start/End: Original strand, 5428830 - 5428895
Alignment:
Q  221 gtatatttgtaaaaacattcaaaaaattacaacaactaataattgtattggttttgatgattttttg 287  Q
    ||||||||||||||| ||| ||||||||||||||| |||| |||| | |||||||||| ||||||||    
T  5428830 gtatatttgtaaaaatatttaaaaaattacaacaattaatgattgcaatggttttgat-attttttg 5428895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 179 - 251
Target Start/End: Complemental strand, 2950214 - 2950144
Alignment:
Q  179 atattagtgggtgtatttaatacttcacaaatttttatgagggtatatttgtaaaaacattcaaaaaattaca 251  Q
    |||||||||||| |||| |||  ||||||| ||||||| ||| |||||||||||||| |||||||||||||||    
T  2950214 atattagtgggtatatt-aatgtttcacaa-tttttatcaggatatatttgtaaaaatattcaaaaaattaca 2950144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 190 - 245
Target Start/End: Original strand, 2443884 - 2443939
Alignment:
Q  190 tgtatttaatacttcacaaatttttatgagggtatatttgtaaaaacattcaaaaa 245  Q
    |||||||||||||||||||||||| |||| ||| ||||| |||| | |||||||||    
T  2443884 tgtatttaatacttcacaaattttaatgatggtttatttttaaagatattcaaaaa 2443939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 222 - 272
Target Start/End: Complemental strand, 24789953 - 24789903
Alignment:
Q  222 tatatttgtaaaaacattcaaaaaattacaacaactaataattgtattggt 272  Q
    |||||||||||||| ||| ||||||||||||||| |||| |||| ||||||    
T  24789953 tatatttgtaaaaatatttaaaaaattacaacaattaatgattgcattggt 24789903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 122; Significance: 2e-62; HSPs: 18)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 90 - 314
Target Start/End: Complemental strand, 38209671 - 38209446
Alignment:
Q  90 ggtcctatttataagaaaaagtcacaacttttaagat-catttattgcttaaaagacttttctagccctcgtttaatgtaggtattttcaatattagtgg 188  Q
    |||| |||||||||||||||||||||||||||||| | ||||||||| ||||||||||| |||| ||||| |||||||| ||| ||||||||||||||||    
T  38209671 ggtcatatttataagaaaaagtcacaacttttaaggtacatttattgtttaaaagacttctctaaccctcatttaatgttggtcttttcaatattagtgg 38209572  T
Q  189 gtgtatttaatacttcacaaatttttatgagggtatatttgtaaaaacattcaaaaaattacaacaactaataattgtattggttttgatgattttttgt 288  Q
    || |||| |||||||||||||||||||  ||||||||||| |||||| ||| |||||||| |||||| |||| ||| | ||||||||||||||||||  |    
T  38209571 gtatattaaatacttcacaaatttttaaaagggtatatttataaaaatatttaaaaaatttcaacaagtaatgattatcttggttttgatgatttttgat 38209472  T
Q  289 ttcttttctcatataaaggaccggag 314  Q
    || |||||| ||||||||||||||||    
T  38209471 tttttttcttatataaaggaccggag 38209446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 90 - 292
Target Start/End: Complemental strand, 36408336 - 36408134
Alignment:
Q  90 ggtcctatttataagaaaaagtcacaacttttaagatcatttattgcttaaaagacttttctagccctcgtttaatgtaggtattttcaatattagtggg 189  Q
    |||| ||| |||||||||||||||||||||| | |  ||||||||| |||| | |||||| || ||||||||||||||  || |||| |||||||||||     
T  36408336 ggtcttatatataagaaaaagtcacaactttaaggtacatttattgtttaacaaacttttttaaccctcgtttaatgtttgtctttttaatattagtgga 36408237  T
Q  190 tgtatttaatacttcacaaatttttatgagggtatatttgtaaaaacattcaaaaaattacaacaactaataattgtattggttttgatgattttttgtt 289  Q
    | || ||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||| || ||||||||||||||| |||    
T  36408236 tataattaatacttaacaaatttttatgagggtatatttgtaaaaacattcaaaaaattataactactaataattgtcttagttttgatgatttttggtt 36408137  T
Q  290 tct 292  Q
    |||    
T  36408136 tct 36408134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 90 - 320
Target Start/End: Original strand, 8251232 - 8251463
Alignment:
Q  90 ggtcctatttataagaaaaagtcacaacttttaagatc-atttattgcttaaaagacttttctagccctcgtttaatgtaggtattttcaatattagtgg 188  Q
    |||||||||||||||||||  |||||||||||||| |  | |||||||||||||||| ||| |  || |  |||||||   || |||| ||||||||||     
T  8251232 ggtcctatttataagaaaatatcacaacttttaaggtgtaattattgcttaaaagacctttttccccattatttaatggttgtctttttaatattagtga 8251331  T
Q  189 gtgtatttaatacttcacaaatttttatgagggtatatttgtaaaaacattcaaaaaattacaacaactaataattgtattggttttgatgattttttgt 288  Q
    || |||||||| |||||||| |||||||||||||||||||||||||| |||||||||| ||||  || |||| | |||||||||||||||| ||||| ||    
T  8251332 gtttatttaatgcttcacaattttttatgagggtatatttgtaaaaatattcaaaaaactacactaattaatgagtgtattggttttgatgttttttggt 8251431  T
Q  289 ttcttttctcatataaaggaccggagggagta 320  Q
    || | ||||||||  |||||||||||||||||    
T  8251432 ttttcttctcataataaggaccggagggagta 8251463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 90 - 290
Target Start/End: Original strand, 2207768 - 2207967
Alignment:
Q  90 ggtcctatttataagaaaaagtcacaacttttaagat-catttattgcttaaaagacttttctagccctcgtttaatgtaggtattttcaatattagtgg 188  Q
    ||||||||||||| |||||  |||||| ||||||||| || ||||||| | ||||| ||||||| ||||  ||||||||  ||||||| ||||||| |||    
T  2207768 ggtcctatttata-gaaaatatcacaatttttaagatgcagttattgcgttaaagaattttctaccccttatttaatgtttgtatttttaatattaatgg 2207866  T
Q  189 gtgtatttaatacttcacaaatttttatgagggtatatttgtaaaaacattcaaaaaattacaacaactaataattgtattggttttgatgattttttgt 288  Q
    ||||||||||| |||||||| |||||||||||||||||||||||||| ||||||||| |||||  || |||| | |||| ||||||||||| ||||||||    
T  2207867 gtgtatttaatgcttcacaa-tttttatgagggtatatttgtaaaaatattcaaaaagttacactaaataatgagtgtaatggttttgatgtttttttgt 2207965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 90 - 290
Target Start/End: Original strand, 1445349 - 1445550
Alignment:
Q  90 ggtcctatttataagaaaaagtcacaacttttaagatc--atttattgcttaaaagacttttctagccctcgtttaatgtaggtattttcaatattagtg 187  Q
    ||||||||||||||||||| ||||||||||||||| |   | |||||||||||| |||||||||| ||||  ||||||||   | ||||  |||||||||    
T  1445349 ggtcctatttataagaaaatgtcacaacttttaaggtgtaagttattgcttaaatgacttttctatcccta-tttaatgtttctcttttagatattagtg 1445447  T
Q  188 ggtgtatttaatacttcacaaatttttatgagggtatatttgtaaaaacattcaaaaaattacaacaactaataattgtattggttttgatgattttttg 287  Q
     |||||||||||  ||||||| |||| |||| |||||||||||||||  |||||||||||||||  ||  ||| | || |||| ||||||||||||||||    
T  1445448 agtgtatttaatgtttcacaatttttaatgaaggtatatttgtaaaagtattcaaaaaattacattaatcaatgaatgcattgattttgatgattttttg 1445547  T
Q  288 ttt 290  Q
    |||    
T  1445548 ttt 1445550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 146 - 315
Target Start/End: Original strand, 5923871 - 5924044
Alignment:
Q  146 ttttctagccctcgtttaatgtaggtattttcaatattagtgggtgtatttaatacttcacaaatttttatgaggg----tatatttgtaaaaacattca 241  Q
    ||||||| ||||| ||||||||  || |||| |||||||||| || || ||||||||| |||||||||||||||||    ||||||| |||||||||| |    
T  5923871 ttttctaaccctcatttaatgtttgtctttttaatattagtgtgtataattaatactttacaaatttttatgagggcatatatatttttaaaaacattta 5923970  T
Q  242 aaaaattacaacaactaataattgtattggttttgatgattttttgtttcttttctcatataaaggaccggagg 315  Q
    ||||||||| || |||||| ||| | ||||||||||||||||||  ||| |||||| ||| ||| |||||||||    
T  5923971 aaaaattactaccactaatgattatcttggttttgatgatttttgatttattttcttataaaaaagaccggagg 5924044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 90 - 235
Target Start/End: Original strand, 36054812 - 36054958
Alignment:
Q  90 ggtcctatttataagaaaaagtcacaacttttaagatc-atttattgcttaaaagacttttctagccctcgtttaatgtaggtattttcaatattagtgg 188  Q
    ||||||||||||||||||| ||||||||||||||| |  |||||||| ||||||||||||| || ||||   |||||||  || |||| |||||||||||    
T  36054812 ggtcctatttataagaaaatgtcacaacttttaaggtatatttattgtttaaaagacttttataccccttaattaatgtttgtctttttaatattagtgg 36054911  T
Q  189 gtgtatttaatacttcacaaatttttatgagggtatatttgtaaaaa 235  Q
     ||||||||||||||| ||| |||| || ||||||||||| ||||||    
T  36054912 atgtatttaatacttcccaatttttaataagggtatatttataaaaa 36054958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 94 - 320
Target Start/End: Original strand, 31658853 - 31659080
Alignment:
Q  94 ctatttataagaaaaagtcacaacttttaagatc-atttattgcttaaaagacttttctagccctcgtttaatgtaggtattttcaatattagtgggtgt 192  Q
    |||||||||||||||  ||||||||||||||||  | |||||| ||||||||||||| || || |  ||||||||  || |||| |||| |||||| |||    
T  31658853 ctatttataagaaaatatcacaacttttaagatgtagttattgtttaaaagacttttttaacctttatttaatgtttgtctttttaatactagtggatgt 31658952  T
Q  193 atttaatacttcacaaatttttatgagggtatatttgtaaaaacattcaaaaaattacaacaactaataattgtattggttttga-tgattttttgtttc 291  Q
    ||||||| || || || ||||||||||| |||||||||||||| ||||||||||||| |  || |||| | ||||||| |||||| |  ||||||||||     
T  31658953 atttaatgctgcataa-tttttatgaggatatatttgtaaaaatattcaaaaaattatactaattaatgagtgtattgattttgattttttttttgtttt 31659051  T
Q  292 ttttctcatataaaggaccggagggagta 320  Q
    | |||| |||| ||| |||||| ||||||    
T  31659052 tattcttatattaagaaccggatggagta 31659080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 96 - 276
Target Start/End: Complemental strand, 2520277 - 2520098
Alignment:
Q  96 atttataagaaaaagtcacaacttttaagatc-atttattgcttaaaagacttttctagccctcgtttaatgtaggtattttcaatattagtgggtgtat 194  Q
    ||||||||||||| ||||||| |||||||||  | ||||||||||| ||||||| ||| | | | ||||||||   | |||| ||||||| || | ||||    
T  2520277 atttataagaaaatgtcacaaattttaagatgtagttattgcttaagagacttt-ctacctc-catttaatgttccttttttaaatattattgagagtat 2520180  T
Q  195 ttaatacttcacaaatttttatgagggtatatttgtaaaaacattcaaaaaattacaacaactaataattgtattggttttg 276  Q
    |||||  ||||||| ||||||||||| |||||||||||||| ||||||||| |||||  || |||| | |||||||||||||    
T  2520179 ttaatgtttcacaattttttatgaggatatatttgtaaaaatattcaaaaagttacattaattaatgaatgtattggttttg 2520098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 178 - 314
Target Start/End: Complemental strand, 16890331 - 16890194
Alignment:
Q  178 aatattagtgggtgtatttaatacttcacaaatttttatgagggtatatttgtaaaaacattcaaaaaattacaacaactaataattgtattggttttga 277  Q
    |||||||||| || ||||||||  ||||||| |||||||||||||||||||||||||| ||||||||| |||||  || || |||| | ||| |||||||    
T  16890331 aatattagtgagtttatttaatgtttcacaattttttatgagggtatatttgtaaaaatattcaaaaagttacattaattattaatggcattagttttga 16890232  T
Q  278 tgattttttgtt-tcttttctcatataaaggaccggag 314  Q
    || |||||| || | |||||| |||  |||||||||||    
T  16890231 tgtttttttattattttttcttataataaggaccggag 16890194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 101 - 260
Target Start/End: Original strand, 2152328 - 2152488
Alignment:
Q  101 taagaaaaagtcacaacttttaagatcatttattgcttaaaagacttttctagccctcgtttaatgtaggtattttc-aatattagtgggtgtatttaat 199  Q
    ||||||||  |||||| ||||||| |   ||||| ||||||||||||||||| ||||  ||||||||   | ||||  |||||||| | || ||||||||    
T  2152328 taagaaaatatcacaatttttaaggtgtgttattacttaaaagacttttctaccccttatttaatgtttatcttttttaatattagcgagtctatttaat 2152427  T
Q  200 acttcacaaatttttatgagggtatatttgtaaaaacattcaaaaaattacaacaactaat 260  Q
     |||||||| ||||||| ||||||||||| |||||| ||||||||| |||||  |||||||    
T  2152428 gcttcacaattttttataagggtatatttataaaaatattcaaaaagttacactaactaat 2152488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 90 - 181
Target Start/End: Complemental strand, 30112577 - 30112485
Alignment:
Q  90 ggtcctatttataagaaaaagtcacaacttttaagatc-atttattgcttaaaagacttttctagccctcgtttaatgtaggtattttcaata 181  Q
    ||||||||||||||||||| ||||||| ||||||| |  | ||||||||||||||| |||| || ||||||||||||||| || |||| ||||    
T  30112577 ggtcctatttataagaaaatgtcacaaattttaaggtgtagttattgcttaaaagatttttttatccctcgtttaatgtatgtctttttaata 30112485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 189 - 245
Target Start/End: Complemental strand, 30653683 - 30653627
Alignment:
Q  189 gtgtatttaatacttcacaaatttttatgagggtatatttgtaaaaacattcaaaaa 245  Q
    |||||||||||  |||||||||||||||||||||||||||||||||  |||||||||    
T  30653683 gtgtatttaatgtttcacaaatttttatgagggtatatttgtaaaattattcaaaaa 30653627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 178 - 278
Target Start/End: Complemental strand, 30870804 - 30870704
Alignment:
Q  178 aatattagtgggtgtatttaatacttcacaaatttttatgagggtatatttgtaaaaacattcaaaaaattacaacaactaataattgtattggttttga 277  Q
    ||||||||||| | ||||||||  ||||||| ||||||| ||||||||||||| |||| ||| ||| | |||||| || |||| ||||||||| ||||||    
T  30870804 aatattagtggatatatttaatgtttcacaattttttataagggtatatttgtcaaaatatttaaatacttacaagaaataattattgtattgattttga 30870705  T
Q  278 t 278  Q
    |    
T  30870704 t 30870704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 173 - 262
Target Start/End: Original strand, 27518545 - 27518634
Alignment:
Q  173 ttttcaatattagtgggtgtatttaatacttcacaaatttttatgagggtatatttgtaaaaacattcaaaaaattacaacaactaataa 262  Q
    |||| ||||||||||| || ||||||||  |||||| |||||||||||| ||||||   |||||| | ||||||| ||| ||| ||||||    
T  27518545 tttttaatattagtggatgcatttaatatatcacaactttttatgagggcatatttactaaaacaataaaaaaataacagcaattaataa 27518634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 190 - 263
Target Start/End: Complemental strand, 30105670 - 30105597
Alignment:
Q  190 tgtatttaatacttcacaaatttttatgagggtatatttgtaaaaacattcaaaaaattacaacaactaataat 263  Q
    ||||||||||| |||||||  || ||| |  |||||||||||||||  || ||||||||||||||| |||||||    
T  30105670 tgtatttaatatttcacaacattctataaaagtatatttgtaaaaatgtttaaaaaattacaacaattaataat 30105597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 90 - 123
Target Start/End: Original strand, 35431581 - 35431614
Alignment:
Q  90 ggtcctatttataagaaaaagtcacaacttttaa 123  Q
    ||||||||||||||||||| ||||||||||||||    
T  35431581 ggtcctatttataagaaaatgtcacaacttttaa 35431614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 94 - 157
Target Start/End: Original strand, 40694232 - 40694296
Alignment:
Q  94 ctatttataagaaaaagtcacaacttttaagatc-atttattgcttaaaagacttttctagccct 157  Q
    |||||||||||||||  ||||||||||| || |  | ||||||||||||||||||||||| ||||    
T  40694232 ctatttataagaaaatatcacaactttttaggtgtaattattgcttaaaagacttttctacccct 40694296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 116; Significance: 6e-59; HSPs: 30)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 116; E-Value: 6e-59
Query Start/End: Original strand, 90 - 320
Target Start/End: Original strand, 14568353 - 14568584
Alignment:
Q  90 ggtcctatttataagaaaaagtcacaacttttaagatc-atttattgcttaaaagacttttctagccctcgtttaatgtaggtattttcaatattagtgg 188  Q
    |||||||| |||||||||||||  |||||||||||||  |||||||| |||||||||||||||| ||||| ||||||||   | ||||||| ||||||||    
T  14568353 ggtcctatatataagaaaaagtttcaacttttaagatatatttattgtttaaaagacttttctaaccctcatttaatgtttctcttttcaaaattagtgg 14568452  T
Q  189 gtgtatttaatacttcacaaatttttatgagggtatatttgtaaaaacattcaaaaaattacaacaactaataattgtattggttttgatgattttttgt 288  Q
    || |||| ||||||||| |||||| ||  | ||||||||||||||||||||||||| ||||||| ||||||| ||||| |||||||||||||||| |  |    
T  14568453 gtatattgaatacttcaaaaatttataatacggtatatttgtaaaaacattcaaaatattacaataactaatgattgtcttggttttgatgatttatgat 14568552  T
Q  289 ttcttttctcatataaaggaccggagggagta 320  Q
    ||||||||| ||||||||||||||||||||||    
T  14568553 ttcttttcttatataaaggaccggagggagta 14568584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 101; E-Value: 6e-50
Query Start/End: Original strand, 91 - 313
Target Start/End: Complemental strand, 10599901 - 10599677
Alignment:
Q  91 gtcctatttataagaaaaagtcacaacttttaagat-catttattgcttaaaagacttttctagccctcgtttaatgtaggtattttcaatattagtggg 189  Q
    ||||||||||||||||||||||||||||||| || | ||||||||| || ||| ||||||||| || || ||||||||   | |||| |||| ||||| |    
T  10599901 gtcctatttataagaaaaagtcacaacttttgaggtacatttattgtttgaaaaacttttctaaccttcatttaatgtttatctttttaataatagtgtg 10599802  T
Q  190 tgtatttaatacttcacaaatttttatgagggtatatttgtaaaaacattcaaaaaattacaacaactaataattgtattggttttgatgatt-ttttgt 288  Q
    | |||||||||||||||||| |||||||||||||||||||||||| ||||||||| ||| ||||||||||| | ||| ||||||||||||||| ||||||    
T  10599801 tatatttaatacttcacaaaattttatgagggtatatttgtaaaatcattcaaaacattgcaacaactaatcaatgtcttggttttgatgatttttttgt 10599702  T
Q  289 ttcttttctcatataaaggaccgga 313  Q
    || | |||| ||| |||||||||||    
T  10599701 ttttcttcttataaaaaggaccgga 10599677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 90 - 320
Target Start/End: Original strand, 41508096 - 41508327
Alignment:
Q  90 ggtcctatttataagaaaaagtcacaacttttaagatc-atttattgcttaaaagacttttctagccctcgtttaatgtaggtattttcaatattagtgg 188  Q
    |||||||  ||||||||||  |||||| ||||||| |  | |||||||||||||||||||| || ||||  ||||||||  || |||| |||||||||||    
T  41508096 ggtcctaaatataagaaaatatcacaatttttaaggtgtagttattgcttaaaagacttttttaccccttatttaatgtttgtctttttaatattagtgg 41508195  T
Q  189 gtgtatttaatacttcacaaatttttatgagggtatatttgtaaaaacattcaaaaaattacaacaactaataattgtattggttttgatgattttttgt 288  Q
    ||||||||||| |||||||| |||||||||||||||||||||||||||||||||||| |||||  || |||||| ||||||||||| |||| ||||| ||    
T  41508196 gtgtatttaatgcttcacaattttttatgagggtatatttgtaaaaacattcaaaaagttacactaattaataagtgtattggtttcgatgttttttagt 41508295  T
Q  289 ttcttttctcatataaaggaccggagggagta 320  Q
    || | |||| |||  |||||||| | ||||||    
T  41508296 ttttcttcttataataaggaccgaatggagta 41508327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 192 - 297
Target Start/End: Original strand, 10409792 - 10409899
Alignment:
Q  192 tatttaatacttcacaaatttttatgagggtatatttgtaaaaacattc--aaaaaattacaacaactaataattgtattggttttgatgattttttgtt 289  Q
    |||||||||||||||||||||||| |||||||||||| |||||||||||  |||||||| ||||||||||| ||||| ||||||||||||||||||||||    
T  10409792 tatttaatacttcacaaatttttaagagggtatatttataaaaacattcaaaaaaaattgcaacaactaatgattgttttggttttgatgattttttgtt 10409891  T
Q  290 tcttttct 297  Q
    ||||||||    
T  10409892 tcttttct 10409899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 131 - 245
Target Start/End: Complemental strand, 15033413 - 15033300
Alignment:
Q  131 tattgcttaaaagacttttctagccctcgtttaatgtaggtattttcaatattagtgggtgtatttaatacttcacaaatttttatgagggtatatttgt 230  Q
    ||||| ||||||||||||| |||| |||||||||| |  || ||||||||||||||| || |||| |||| |||| |||||||||| || ||||||||||    
T  15033413 tattgtttaaaagactttt-tagctctcgtttaatatttgtcttttcaatattagtgagtatattcaataattcataaatttttattagagtatatttgt 15033315  T
Q  231 aaaaacattcaaaaa 245  Q
    |||| ||||||||||    
T  15033314 aaaatcattcaaaaa 15033300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 94 - 251
Target Start/End: Original strand, 20949073 - 20949230
Alignment:
Q  94 ctatttataagaaaaagtcacaacttttaagatc-atttattgcttaaaagacttttctagccctcgtttaatgtaggtattttcaatattagtgggtgt 192  Q
    ||||||||||||||| |||| |||||||||| |  | |||||||||||| || |||| || ||||  ||||||||   | |||| |||||||||  ||||    
T  20949073 ctatttataagaaaatgtcataacttttaaggtgtagttattgcttaaatgatttttttatcccta-tttaatgtctctcttttgaatattagtatgtgt 20949171  T
Q  193 atttaatacttcacaaatttttatgagggtatatttgtaaaaacattcaaaaaattaca 251  Q
    |||||||  ||||||| |||||||||||||||||||||||||| ||| ||||| |||||    
T  20949172 atttaatgtttcacaattttttatgagggtatatttgtaaaaatatttaaaaagttaca 20949230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 90 - 244
Target Start/End: Original strand, 7307436 - 7307592
Alignment:
Q  90 ggtcctatttataagaaaaagtcacaacttttaa-gatcatttattgcttaaaagacttttctagccc-tcgtttaatgtaggtattttcaatattagtg 187  Q
    |||| |||||||||||||| |||||||||||||| ||  | |||||| |||||||| ||||   |||| |  ||||| ||  || |||| ||||||||||    
T  7307436 ggtcatatttataagaaaatgtcacaacttttaaagagtagttattgtttaaaagattttttatgccccttatttaaggtttgtttttttaatattagtg 7307535  T
Q  188 ggtgtatttaatacttcacaaatttttatgagggtatatttgtaaaaacattcaaaa 244  Q
    | |||||||||| |||||||| |||||||||| ||||||||||||||| || |||||    
T  7307536 gatgtatttaatgcttcacaattttttatgagagtatatttgtaaaaatatgcaaaa 7307592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 94 - 188
Target Start/End: Original strand, 42935454 - 42935549
Alignment:
Q  94 ctatttataagaaaaagtcacaacttttaagat-catttattgcttaaaagacttttctagccctcgtttaatgtaggtattttcaatattagtgg 188  Q
    |||||||||||||||||||||||||||| |||| ||||||||| |||||||| |||||||   ||| |||||||| ||| |||||| |||||||||    
T  42935454 ctatttataagaaaaagtcacaacttttgagatacatttattgtttaaaagatttttctaattctcatttaatgttggtcttttcagtattagtgg 42935549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 199 - 320
Target Start/End: Original strand, 42935834 - 42935947
Alignment:
Q  199 tacttcacaaatttttatgagggtatatttgtaaaaacat-tcaaaaaattacaacaactaataattgtattggttttgatgattttttgtttcttttct 297  Q
    |||||||||| |||||| ||||||||||||||||||||||   |||||||| ||||||||||| ||||| |         |||||||| |||||||||||    
T  42935834 tacttcacaagtttttaagagggtatatttgtaaaaacatgaaaaaaaattgcaacaactaatgattgtct---------tgatttttggtttcttttct 42935924  T
Q  298 catataaaggaccggagggagta 320  Q
     ||||||||||||||||||||||    
T  42935925 tatataaaggaccggagggagta 42935947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 178 - 315
Target Start/End: Complemental strand, 17757448 - 17757311
Alignment:
Q  178 aatattagtgggtgtatttaatacttcacaaatttttatgagggtatatttgtaaaaacattcaaaaaattacaacaactaataattgtattggttttga 277  Q
    ||||||||||||| |||| |||| ||||||| ||||||||| | |||||||||||||||||| ||||| |||| |||| |||| |  || ||| |||| |    
T  17757448 aatattagtgggtatattcaataattcacaattttttatgaagatatatttgtaaaaacattaaaaaagttacgacaattaatgacggtcttgattttta 17757349  T
Q  278 tgattttttgtttcttttctcatataaaggaccggagg 315  Q
    |||||||| |||| | |||| |||  ||| ||||||||    
T  17757348 tgatttttggtttttcttcttataataagaaccggagg 17757311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 138 - 278
Target Start/End: Complemental strand, 14658877 - 14658737
Alignment:
Q  138 taaaagacttttctagccctcgtttaatgtaggtattttcaatattagtgggtgtatttaatacttcacaaatttttatgagggtatatttgtaaaaaca 237  Q
    ||||||||||||  |  |||||||||||||   | |||| |||| ||||||   |||||||||||||| |  ||||||||||||||||||||||||||||    
T  14658877 taaaagactttttcaatcctcgtttaatgtttatctttttaatactagtggaaatatttaatacttcatatgtttttatgagggtatatttgtaaaaaca 14658778  T
Q  238 ttcaaaaaattacaacaactaataattgtattggttttgat 278  Q
    || ||||| ||  || ||||||| ||| ||| |||||||||    
T  14658777 tttaaaaagttgtaataactaatgattttataggttttgat 14658737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 190 - 290
Target Start/End: Complemental strand, 45072569 - 45072469
Alignment:
Q  190 tgtatttaatacttcacaaatttttatgagggtatatttgtaaaaacattcaaaaaattacaacaactaataattgtattggttttgatgattttttgtt 289  Q
    |||||||||| |||||||  |||||||||| |||||||| |||||| ||||||||||||| |  || |||| | |||||||||||||||| || ||||||    
T  45072569 tgtatttaatgcttcacagttttttatgagagtatatttataaaaatattcaaaaaattatactaattaatcagtgtattggttttgatgtttgtttgtt 45072470  T
Q  290 t 290  Q
    |    
T  45072469 t 45072469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 130 - 278
Target Start/End: Original strand, 34470095 - 34470243
Alignment:
Q  130 ttattgcttaaaagacttttctagccctcgtttaatgtaggtattttcaatattagtgggtgtatttaatacttcacaaatttttatgagggtatatttg 229  Q
    ||||| ||||||||| |||| || |||||||||||||    | |||| |||||||||| |||||||||||| ||||||| ||| || | |  ||||||||    
T  34470095 ttattacttaaaagaattttttatccctcgtttaatgcttctctttttaatattagtgagtgtatttaatatttcacaattttgtaagtgtttatatttg 34470194  T
Q  230 taaaaacattcaaaaaattacaacaactaataattgtattggttttgat 278  Q
    |||||| ||||||||| ||  |  || |||| ||||||||| |||||||    
T  34470195 taaaaatattcaaaaagtttaattaattaatgattgtattgattttgat 34470243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 90 - 290
Target Start/End: Original strand, 12506704 - 12506905
Alignment:
Q  90 ggtcctatttataagaaaaagtcacaacttttaagatc-atttattgcttaaaagacttttctagccctcgtttaatgtaggtattttcaatattagtgg 188  Q
    |||||||  ||||||||||  | |||||||||||| |  | |||||| | |||||||||||||| ||||  ||||||||   | |||| ||| | |||      
T  12506704 ggtcctaaatataagaaaatattacaacttttaaggtgtagttattgttcaaaagacttttctatcccttatttaatgtgtttgtttttaatctcagtaa 12506803  T
Q  189 gtgtatttaatacttcacaaatttttatgagggtatatttgtaaaaacattcaaaaaattacaacaactaataattgtattggttttgatgattttttgt 288  Q
    ||||||||| |  ||||||| ||||||||||||||||||||||| |  || |||||| |||||  || |||| |||| ||||||||| ||| ||||| ||    
T  12506804 gtgtatttattgtttcacaattttttatgagggtatatttgtaatagtatgcaaaaagttacactaattaatgattgcattggttttaatgttttttggt 12506903  T
Q  289 tt 290  Q
    ||    
T  12506904 tt 12506905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 99 - 227
Target Start/End: Original strand, 46341502 - 46341631
Alignment:
Q  99 tataagaaaaagtcacaacttttaagatc-atttattgcttaaaagacttttctagccctcgtttaatgtaggtattttcaatattagtgggtgtattta 197  Q
    ||||||||||  |||||||||||||| |  | |||||||||||||||||| |||| | ||  |||| |||   | ||||  ||| |||||||||||||||    
T  46341502 tataagaaaatatcacaacttttaaggtgtagttattgcttaaaagacttctctaccacttatttattgtttttgtttttgataatagtgggtgtattta 46341601  T
Q  198 atacttcacaaatttttatgagggtatatt 227  Q
    || |||||||| |||||| |||||||||||    
T  46341602 atgcttcacaactttttacgagggtatatt 46341631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 130 - 290
Target Start/End: Original strand, 12485313 - 12485473
Alignment:
Q  130 ttattgcttaaaagacttttctagccctcgtttaatgtaggtattttcaatattagtgggtgtatttaatacttcacaaatttttatgagggtatatttg 229  Q
    |||||| | |||||||||||||| ||||  ||||||||   | |||| ||| | |||  ||||||||| |  ||||||| ||||||||||||||||||||    
T  12485313 ttattgttcaaaagacttttctatcccttatttaatgtgtttgtttttaatctcagtaagtgtatttattgtttcacaattttttatgagggtatatttg 12485412  T
Q  230 taaaaacattcaaaaaattacaacaactaataattgtattggttttgatgattttttgttt 290  Q
    ||| |  || |||||| |||||  || |||| |||| ||||||||| ||| ||||| ||||    
T  12485413 taatagtatgcaaaaagttacactaattaatgattgcattggttttaatgttttttggttt 12485473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 95 - 166
Target Start/End: Complemental strand, 17757558 - 17757486
Alignment:
Q  95 tatttataagaaaaagtcacaacttttaagat-catttattgcttaaaagacttttctagccctcgtttaatg 166  Q
    |||||||||||||||| ||||||||||||| | ||||||||||||||||||| ||| || ||||  |||||||    
T  17757558 tatttataagaaaaagacacaacttttaaggtacatttattgcttaaaagacatttttaaccctaatttaatg 17757486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 192 - 239
Target Start/End: Original strand, 13777739 - 13777786
Alignment:
Q  192 tatttaatacttcacaaatttttatgagggtatatttgtaaaaacatt 239  Q
    |||||||||||||||||||||||||||  |||||||| ||||||||||    
T  13777739 tatttaatacttcacaaatttttatgaacgtatatttataaaaacatt 13777786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 90 - 208
Target Start/End: Complemental strand, 46101364 - 46101245
Alignment:
Q  90 ggtcctatttataagaaaaagtcacaacttttaagat-catttattgcttaaaagacttttctagccctcgtttaatgtaggtattttcaatattagtgg 188  Q
    |||| |||||||||||||| |||| |||||||||| |  | ||||| || |||||||||||||| ||||| |||||||   ||  ||| |||||||||||    
T  46101364 ggtcttatttataagaaaatgtcataacttttaagttgtagttattactcaaaagacttttctacccctcatttaatgattgtcattttaatattagtgg 46101265  T
Q  189 gtgtatttaatacttcacaa 208  Q
     |||| |||||| |||||||    
T  46101264 atgtacttaatatttcacaa 46101245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 94 - 239
Target Start/End: Complemental strand, 14650247 - 14650104
Alignment:
Q  94 ctatttataagaaaaagtcacaacttttaagat-catttattgcttaaaagac-ttttctagccctcgtttaatgtaggtattttcaatattagtgggtg 191  Q
    ||||||||||||||| ||||||| |||||||||  ||||||||| |||||||| |||| ||| |||| || |||||   |  ||| |||| ||||||       
T  14650247 ctatttataagaaaatgtcacaatttttaagatgtatttattgcataaaagactttttttagtcctcattcaatgtttatcattttaatactagtgg--- 14650151  T
Q  192 tatttaatacttcacaaatttttatgagggtatatttgtaaaaacatt 239  Q
     || || ||||||| ||| ||||| |||||||||||||||||||||||    
T  14650150 -atatattacttcataaaattttacgagggtatatttgtaaaaacatt 14650104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 91 - 148
Target Start/End: Original strand, 29808443 - 29808501
Alignment:
Q  91 gtcctatttataagaaaaagtcacaacttttaagat-catttattgcttaaaagacttt 148  Q
    |||||||||||||||||||| ||||||||||| | | |||||||||| |||||||||||    
T  29808443 gtcctatttataagaaaaagccacaacttttacggtgcatttattgcataaaagacttt 29808501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 218 - 275
Target Start/End: Complemental strand, 46101197 - 46101140
Alignment:
Q  218 agggtatatttgtaaaaacattcaaaaaattacaacaactaataattgtattggtttt 275  Q
    |||||||||||||||||| ||| |||||| |||||||| |||| |||||||| |||||    
T  46101197 agggtatatttgtaaaaatatttaaaaaactacaacaattaatgattgtattagtttt 46101140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 218 - 278
Target Start/End: Original strand, 943259 - 943318
Alignment:
Q  218 agggtatatttgtaaaaacattcaaaaaattacaacaactaataattgtattggttttgat 278  Q
    ||||||| |||||||||| ||| |||| |||||||||| |||| |||||||||||||||||    
T  943259 agggtatgtttgtaaaaatatttaaaa-attacaacaattaatgattgtattggttttgat 943318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 178 - 321
Target Start/End: Original strand, 18145860 - 18146003
Alignment:
Q  178 aatattagtgggtgtatttaatacttcacaaatttttatgagggtatatttgtaaaaacattcaaaaaattacaacaactaataattgtattggttttga 277  Q
    ||||||||||| ||||||||||| || |||| ||| |||  ||||||||||||||||  ||  ||||| ||| ||||| ||||||||| |||  |||| |    
T  18145860 aatattagtggatgtatttaatattttacaactttctatacgggtatatttgtaaaattatataaaaagttataacaattaataattgcattaattttta 18145959  T
Q  278 tgattttttgtttcttttctcatataaaggaccggagggagtaa 321  Q
    |  ||||| | || |||||| ||| |||| |  |||||||||||    
T  18145960 tattttttggctttttttcttataaaaagtattggagggagtaa 18146003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 173 - 290
Target Start/End: Original strand, 2122429 - 2122547
Alignment:
Q  173 ttttcaatattagtgggtgtatttaatacttcacaaatttttatgagggtatatttgtaaaaacattcaaaaaa-ttacaacaactaataattgtattgg 271  Q
    |||| |||||||||| ||||||||||| ||| |||  | |||| || | | |||||||||||| |||||||||| |||||  || |||||||| ||||||    
T  2122429 tttttaatattagtgagtgtatttaatgcttaacatttgtttacgatgctgtatttgtaaaaatattcaaaaaacttacattaattaataattatattgg 2122528  T
Q  272 ttttgatgattttttgttt 290  Q
    ||  |||| ||||| ||||    
T  2122529 ttaagatgttttttggttt 2122547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 90 - 124
Target Start/End: Original strand, 17205125 - 17205159
Alignment:
Q  90 ggtcctatttataagaaaaagtcacaacttttaag 124  Q
    ||||||||||||||||||| |||||||||||||||    
T  17205125 ggtcctatttataagaaaatgtcacaacttttaag 17205159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 210 - 291
Target Start/End: Original strand, 15968471 - 15968552
Alignment:
Q  210 tttttatgagggtatatttgtaaaaacattcaaaaaattacaacaactaataattgtattggttttgatgattttttgtttc 291  Q
    |||||||||  || || ||||||||||||||||||| || |||||| ||||||| || ||  |||||||| |||||| ||||    
T  15968471 tttttatgaaagtgtaattgtaaaaacattcaaaaagttgcaacaattaataatcgtcttaattttgatgtttttttttttc 15968552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 257 - 313
Target Start/End: Complemental strand, 9183138 - 9183082
Alignment:
Q  257 taataattgtattggttttgatgattttttgtttcttttctcatataaaggaccgga 313  Q
    |||| ||| ||||||||||||||||||||| |||  ||||| |||| ||||||||||    
T  9183138 taatgattatattggttttgatgattttttattttgtttcttatattaaggaccgga 9183082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 192 - 251
Target Start/End: Original strand, 37048676 - 37048738
Alignment:
Q  192 tatttaatacttcacaaatttttatgaggg---tatatttgtaaaaacattcaaaaaattaca 251  Q
    ||||||||  ||||| |||||||||||||    |||||||||| |||||||||||||||||||    
T  37048676 tatttaatggttcacgaatttttatgaggtacatatatttgtataaacattcaaaaaattaca 37048738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 257 - 321
Target Start/End: Original strand, 46341710 - 46341774
Alignment:
Q  257 taataattgtattggttttgatgattttttgtttcttttctcatataaaggaccggagggagtaa 321  Q
    |||| |||| ||||||||||||| ||||| |||| | |||| |||  ||||||||||||||||||    
T  46341710 taatgattgcattggttttgatgttttttggtttttcttcttataataaggaccggagggagtaa 46341774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 107; Significance: 2e-53; HSPs: 30)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 90 - 320
Target Start/End: Complemental strand, 30041457 - 30041227
Alignment:
Q  90 ggtcctatttataagaaaaagtcacaacttttaagatcatttattgcttaaaagacttttctagccctcgtttaatgtaggtattttcaatattagtggg 189  Q
    ||||| || ||| ||||||||| |||||||| | |   |||||||| |||||||||||||||| ||||   |||||||  || |||| |||||||||||     
T  30041457 ggtccaatatattagaaaaagtgacaactttaaggtatatttattgtttaaaagacttttctaacccttaattaatgtttgtctttttaatattagtggt 30041358  T
Q  190 tgtatttaatacttcacaaatttttatgagggtatatttgtaaaaacattcaaaaaattacaacaactaataattgtattggttttgatgattttttgtt 289  Q
    | ||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||| |||||| ||||| ||||||||||||||||||| ||    
T  30041357 tatatttaatacttcacaaatctttatgagggtatatttataaaaacattcaaaaaattacaaccactaatgattgtcttggttttgatgattttttatt 30041258  T
Q  290 tcttttctcatataaaggaccggagggagta 320  Q
    | |||||| ||| |||||||| |||| ||||    
T  30041257 ttttttcttataaaaaggacctgaggaagta 30041227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 152 - 321
Target Start/End: Complemental strand, 43105236 - 43105065
Alignment:
Q  152 agccctcgtttaatgtaggtattttcaatattagtgggtgtatttaatacttcacaaatttttatgagggtatatttgtaaaaacattcaa-aaaattac 250  Q
    ||||||| |||||||| | | |||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  43105236 agccctcatttaatgttgatcttttcaatattagtgggtatatttgatacttcacaaatttttatgagggtatatttgtaaaaacattcaaaaaaattac 43105137  T
Q  251 aacaactaataattgtattggttttgatgattttttg-tttcttttctcatataaaggaccggagggagtaa 321  Q
    ||||| |||| ||||| ||  |||||||||||||| | ||| |||||| |||||||||||||||||||||||    
T  43105136 aacaattaatgattgtcttaattttgatgatttttggtttttttttcttatataaaggaccggagggagtaa 43105065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 139 - 308
Target Start/End: Original strand, 35104715 - 35104883
Alignment:
Q  139 aaaagacttttctagccctcgtttaatgtaggtattttcaatattagtgggtgtatttaatacttcacaaatttttatgagggtatatttgtaaaaacat 238  Q
    |||||| ||||||| || || |||||||| ||| ||||||||||||||| || |||||||||| ||| ||| ||||| ||||||||||||||| ||||||    
T  35104715 aaaagatttttctaaccttcatttaatgttggtcttttcaatattagtgtgtatatttaatacctcaaaaaattttaagagggtatatttgtacaaacat 35104814  T
Q  239 tcaaaaaattacaacaactaataattgtattggttttgatgattttttgtttcttttctcatataaagga 308  Q
    |||||||||| ||||||||||||||||| |||| ||||||||||||||||||||||||| ||||||||||    
T  35104815 tcaaaaaattgcaacaactaataattgtcttgg-tttgatgattttttgtttcttttcttatataaagga 35104883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 127 - 290
Target Start/End: Original strand, 30577822 - 30577984
Alignment:
Q  127 catttattgcttaaaagacttttctagccctcgtttaatgtaggtattttcaatattagtgggtgtatttaatacttcacaaatttttatgagggtatat 226  Q
    ||||||||  ||||||||| |||||| ||||| |||||||| ||| ||||||| |||||| | | |||||||||||||||  |||||||||| |||||||    
T  30577822 catttattatttaaaagacgtttctatccctcatttaatgttggtcttttcaacattagtagatatatttaatacttcactcatttttatgatggtatat 30577921  T
Q  227 ttgtaaaaacattcaaaaaattacaacaactaataattgtattggttttgatgattttttgttt 290  Q
    ||||||||||||| |||||||||||||||||||| ||| | ||| ||||||||| |||| ||||    
T  30577922 ttgtaaaaacatttaaaaaattacaacaactaat-attatcttgattttgatgaattttagttt 30577984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 90 - 321
Target Start/End: Complemental strand, 46918614 - 46918383
Alignment:
Q  90 ggtcctatttataagaaaaagtcacaacttttaagatcatttattgcttaaaagacttttctagccctcgtttaatgtaggtattttcaatattagtggg 189  Q
    ||||||||||||||||||| ||||||| |||||||   | |||||||||||||||||||| || || || ||||||||  || |||| ||||||| ||      
T  46918614 ggtcctatttataagaaaatgtcacaatttttaaggatagttattgcttaaaagacttttttatccttcatttaatgtctgtctttttaatattaatgaa 46918515  T
Q  190 tgtatttaatacttcacaaatttttatgagggtatatttgtaaaaacattcaaaaaattacaacaactaataattgtattggttttgatgattttttgtt 289  Q
    ||||||||||  |||| ||  || ||| ||||||||||||||||||  || ||||| ||||||||| ||||  | | ||||||||||||| |||||  ||    
T  46918514 tgtatttaatgtttcaaaatattctataagggtatatttgtaaaaatgtttaaaaatttacaacaattaatgttggcattggttttgatgttttttgatt 46918415  T
Q  290 tcttttctcatataaaggaccggagggagtaa 321  Q
    | |||||| |||| ||||||||||||||||||    
T  46918414 ttttttcttatattaaggaccggagggagtaa 46918383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 90 - 320
Target Start/End: Original strand, 45261360 - 45261588
Alignment:
Q  90 ggtcctatttataagaaaaagtcacaacttttaagat-catttattgcttaaaagacttttctagccctcgtttaatgtaggtattttcaatattagtgg 188  Q
    ||||||||||||||||||| ||||||||||||||| |  | |||||||||||| |||||||||| ||||  ||||||||   | |||| |||||||||||    
T  45261360 ggtcctatttataagaaaatgtcacaacttttaagctgtagttattgcttaaatgacttttctatccct-atttaatgtttctcttttaaatattagtgg 45261458  T
Q  189 gtgtatttaatacttcacaaatttttatgagggtatatttgtaaaaacattcaaaaaattacaacaactaataattgtattggttttgatgattttttgt 288  Q
    |||||||||||  |||||||  |||| ||||||||||||||||||||  |||||||| |||||  ||  ||| | || ||||||||||||| ||||| ||    
T  45261459 gtgtatttaatgtttcacaa--ttttttgagggtatatttgtaaaaatgttcaaaaagttacattaatcaatgaatgcattggttttgatgttttttggt 45261556  T
Q  289 ttcttttctcatataaaggaccggagggagta 320  Q
    ||  || || |||  |||||||||||||||||    
T  45261557 tttgttgcttataataaggaccggagggagta 45261588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 173 - 320
Target Start/End: Original strand, 49983788 - 49983936
Alignment:
Q  173 ttttcaatattagtgggtgtatttaatacttcacaaatttttatgagggtatatttgt---aaaaacattcaaaaaattacaacaactaataattgtatt 269  Q
    |||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||   |||||||||| |||||||||||  |||||| ||||| ||    
T  49983788 tttttaatattagtgggtatatttaatacttcacaaatttttatgagggtatatttgtaaaaaaaacattc-aaaaattacaatcactaatgattgtctt 49983886  T
Q  270 ggttttgatgattttttgtttcttttctcatataaaggaccggagggagta 320  Q
    |||||| |||||||||  |||||||||| ||| |||| |||| ||||||||    
T  49983887 ggttttaatgatttttgatttcttttcttata-aaagcaccgtagggagta 49983936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 92 - 321
Target Start/End: Complemental strand, 40345080 - 40344854
Alignment:
Q  92 tcctatttataagaaaaagtcacaacttttaagatc-atttattgcttaaaagacttttctagccctcgtttaatgtaggtattttcaatattagtgggt 190  Q
    |||||| |||||||||| ||||||||||||||| |  | | ||||||||| |||||||| || ||||| |||||| |  || |||| |||||||||| ||    
T  40345080 tcctatctataagaaaatgtcacaacttttaaggtgtagtcattgcttaagagacttttatacccctcatttaatatttgtctttttaatattagtgagt 40344981  T
Q  191 gtatttaatacttcacaaatttttatgagggtatatttgtaaaaacattcaaaaaattacaacaactaataattgtattggttttgatgattttttgttt 290  Q
      |||||||  ||||||| ||||||| |||||||||||||||||| ||||||||| || ||| ||  ||| | || |||||||||||||  ||||| ||     
T  40344980 --atttaatggttcacaattttttataagggtatatttgtaaaaatattcaaaaagttgcaataatcaatgactgcattggttttgatg--tttttttta 40344885  T
Q  291 cttttctcatataaaggaccggagggagtaa 321  Q
     |||||| |||  ||||||||||||||||||    
T  40344884 tttttcttataataaggaccggagggagtaa 40344854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 90 - 251
Target Start/End: Complemental strand, 17003728 - 17003567
Alignment:
Q  90 ggtcctatttataagaaaaa-gtcacaacttttaagatc-atttattgcttaaaagacttttctagccctcgtttaatgtaggtattttcaatattagtg 187  Q
    |||||||||||||| ||||| ||||||||||||||| |  | |||||||||||| ||||||| || ||||  ||||||||   | |||| ||||||||||    
T  17003728 ggtcctatttataaaaaaaatgtcacaacttttaaggtgtagttattgcttaaatgacttttttatcccta-tttaatgtttctcttttaaatattagtg 17003630  T
Q  188 ggtgtatttaatacttcacaaatttttatgagggtatatttgtaaaaacattcaaaaaattaca 251  Q
    ||||| ||||||  ||||||| |||||||||||||||||||||||||| ||||||||| |||||    
T  17003629 ggtgtgtttaatgtttcacaa-tttttatgagggtatatttgtaaaaatattcaaaaagttaca 17003567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 90 - 320
Target Start/End: Original strand, 35455304 - 35455531
Alignment:
Q  90 ggtcctatttataagaaaaagtcacaacttttaagatc-atttattgcttaaaagacttttctagccctcgtttaatgtaggtattttcaatattagtgg 188  Q
    |||| |||||||||||||| ||||||||||||||| |  | |||||||||||| |||||||||| ||||  ||||||||   |||||  ||||||||||     
T  35455304 ggtcttatttataagaaaatgtcacaacttttaaggtgtaattattgcttaaatgacttttctatcccta-tttaatgtttatattta-aatattagtga 35455401  T
Q  189 gtgtatttaatacttcacaaatttttatgagggtatatttgtaaaaacattcaaaaaattacaacaactaataattgtattggttttgatgattttttgt 288  Q
    |||||||||||  ||||||| |||||||||  ||||||||||| ||| ||||||||| ||||   ||  ||||| || ||||||||||||| ||||| ||    
T  35455402 gtgtatttaatgtttcacaattttttatga--gtatatttgtagaaatattcaaaaagttactttaatcaataaatgcattggttttgatgttttttagt 35455499  T
Q  289 ttcttttctcatataaaggaccggagggagta 320  Q
    ||  || || |||  ||||||||||| |||||    
T  35455500 tttgttgcttataataaggaccggagtgagta 35455531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 95 - 290
Target Start/End: Original strand, 22923629 - 22923828
Alignment:
Q  95 tatttataagaaaaagtcacaacttttaagatc----atttattgcttaaaagacttttctagccctcgtttaatgtaggtattttcaatattagtgggt 190  Q
    ||||||||||||||||| ||||||| ||||||     |||||||| ||||| ||| ||||||  | |  ||||||   | | |||| ||||||||| |||    
T  22923629 tatttataagaaaaagttacaacttgtaagatactatatttattggttaaaggacatttctaatcataatttaattgtgatctttttaatattagtaggt 22923728  T
Q  191 gtatttaatacttcacaaatttttatgagggtatatttgtaaaaacattcaaaaaattacaacaactaataattgtattggttttgatgattttttgttt 290  Q
     |||||||||| |||||||||||||||| |||||||||||||||| ||  ||||| ||||||||| |||| | | | ||| |||||||||||||| ||||    
T  22923729 atatttaatacatcacaaatttttatgaaggtatatttgtaaaaatatataaaaagttacaacaattaatgactatcttgattttgatgatttttagttt 22923828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 90 - 245
Target Start/End: Complemental strand, 8825509 - 8825355
Alignment:
Q  90 ggtcctatttataagaaaaagtcacaacttttaagatc-atttattgcttaaaagacttttctagccctcgtttaatgtaggtattttcaatattagtgg 188  Q
    ||||||||||||||||||| ||||||| ||||||| |  | ||||||||||||||||||||||| || || |||||||    |||||| ||||||| ||     
T  8825509 ggtcctatttataagaaaatgtcacaa-ttttaaggtgtagttattgcttaaaagacttttctatccttcatttaatgactttatttt-aatattaatga 8825412  T
Q  189 gtgtatttaatacttcacaaatttttatgagggtatatttgtaaaaacattcaaaaa 245  Q
    ||||||||||| || ||||| ||||||| ||||||||||| |||||| ||| |||||    
T  8825411 gtgtatttaatgctacacaattttttataagggtatatttataaaaatatttaaaaa 8825355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 95 - 164
Target Start/End: Complemental strand, 43106004 - 43105935
Alignment:
Q  95 tatttataagaaaaagtcacaacttttaagatcatttattgcttaaaagacttttctagccctcgtttaa 164  Q
    |||||||||||||||||||||||||||||| | |||||||| |||||||||||||||| ||||| |||||    
T  43106004 tatttataagaaaaagtcacaacttttaaggttatttattgtttaaaagacttttctaaccctcatttaa 43105935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 99 - 167
Target Start/End: Original strand, 49983561 - 49983630
Alignment:
Q  99 tataagaaaaagtcacaacttttaagat-catttattgcttaaaagacttttctagccctcgtttaatgt 167  Q
    |||||||||||||||||||||||||||| ||||||||| |||||||||||||||| ||||| ||||||||    
T  49983561 tataagaaaaagtcacaacttttaagatacatttattgtttaaaagacttttctaaccctcatttaatgt 49983630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 91 - 292
Target Start/End: Original strand, 24650120 - 24650323
Alignment:
Q  91 gtcctatttataagaaaaagtcacaacttttaagatc-atttattgcttaaaagacttttctagccctcgtttaatgtaggtattttcaatattagtggg 189  Q
    ||||||||||||| ||||  | |||||||||||| |  |||||||| | |||| |||||| || || || |||||| |  || |||| |||||||||| |    
T  24650120 gtcctatttataaaaaaa--ttacaacttttaaggtatatttattgttaaaaaaacttttttaaccttcttttaatttttgtctttttaatattagtgag 24650217  T
Q  190 tgtatttaatacttcacaaatttttatgagggtatatttgtaaaaacattcaaaaaattacaacaactaat---aattgtattggttttgatgatttttt 286  Q
      ||||||||| ||||||| ||||||| |  ||||||||||||||  ||  |||||||| |||||||||||    ||||| ||||||||||| |||||||    
T  24650218 catatttaatatttcacaattttttataaaagtatatttgtaaaagtataaaaaaaattgcaacaactaatgaatattgtcttggttttgataatttttt 24650317  T
Q  287 gtttct 292  Q
    ||||||    
T  24650318 gtttct 24650323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 90 - 275
Target Start/End: Original strand, 55452425 - 55452612
Alignment:
Q  90 ggtcctatttataagaaaaagtcacaacttttaagatca----tttattgcttaaaagacttttctagccctcgtttaatgtaggtattttcaa-tatta 184  Q
    |||| |||||||||||||| |||||||||||||| ||      |||||||||||||||| ||||||| |||||  ||||| |  || |||| || |||||    
T  55452425 ggtcttatttataagaaaatgtcacaacttttaaaatgtagtttttattgcttaaaagatttttctatccctcaattaatatctgtctttttaagtatta 55452524  T
Q  185 gtgggtgtatttaatacttcacaaatttttatgagggtatatttgtaaaaacattcaaaaaattacaacaactaataattgtattggtttt 275  Q
    || ||||||||||||   |||||| ||||||||||  |||||||| ||||  ||| ||||| |||||| || |||||||||||||| ||||    
T  55452525 gtaggtgtatttaatgactcacaa-tttttatgag--tatatttgcaaaagaattaaaaaagttacaataattaataattgtattgatttt 55452612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 90 - 245
Target Start/End: Original strand, 41559983 - 41560133
Alignment:
Q  90 ggtcctatttataagaaaaagtcacaacttttaagat-catttattgcttaaaagacttttctagccctcgtttaatgtaggtattttcaatattagtgg 188  Q
    ||||| || ||||||||||| ||| || ||||||||| |||||||   ||||||||||||| || | ||| ||||||||  || |||  ||||||||||     
T  41559983 ggtccaatatataagaaaaaatcataatttttaagatacatttatgatttaaaagacttttttaactctcatttaatgtttgtctttctaatattagtga 41560082  T
Q  189 gtgtatttaatacttcacaaatttttatgagggtatatttgtaaaaacattcaaaaa 245  Q
    ||       ||||||||||||||||||||| ||||||||| ||||||||||||||||    
T  41560083 gtt------atacttcacaaatttttatgaaggtatatttataaaaacattcaaaaa 41560133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 192 - 285
Target Start/End: Complemental strand, 42279285 - 42279192
Alignment:
Q  192 tatttaatacttcacaaatttttatgagggtatatttgtaaaaacattcaaaaaattacaacaactaataattgtattggttttgatgattttt 285  Q
    ||||||||| |||| ||||||||||||||||||||||||||||| ||| ||||| |||| |||| |||| |   | ||| ||||||||||||||    
T  42279285 tatttaatatttcataaatttttatgagggtatatttgtaaaaatattaaaaaagttaccacaattaatgacgatcttgattttgatgattttt 42279192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 90 - 196
Target Start/End: Complemental strand, 32211941 - 32211834
Alignment:
Q  90 ggtcctatttataagaaaaagtcacaacttttaagatc-atttattgcttaaaagacttttctagccctcgtttaatgtaggtattttcaatattagtgg 188  Q
    |||| ||||||||||||||  |||||||||||||| |  | |||||| |||||||||||||||| || |  ||||||||  || |||| |||||||||||    
T  32211941 ggtcttatttataagaaaatttcacaacttttaaggtgtagttattgtttaaaagacttttctacccgttatttaatgtttgtctttttaatattagtgg 32211842  T
Q  189 gtgtattt 196  Q
    ||||||||    
T  32211841 gtgtattt 32211834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 189 - 316
Target Start/End: Original strand, 36659280 - 36659407
Alignment:
Q  189 gtgtatttaatacttcacaaatttttatgagggtatatttgtaaaaacattcaaaaaattacaacaactaataattgtattggttttgatgattttttgt 288  Q
    |||||||||||  |||| || ||||||| |||||||| ||||||||| ||||||||| |||||  || |||  ||||||||| |||||||| ||||  ||    
T  36659280 gtgtatttaatgtttcataattttttattagggtatacttgtaaaaatattcaaaaagttacattaattaacgattgtattgattttgatgtttttaagt 36659379  T
Q  289 ttcttttctcatataaaggaccggaggg 316  Q
    ||  ||||| |||  |||||||||||||    
T  36659380 tttgtttcttataataaggaccggaggg 36659407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 192 - 246
Target Start/End: Original strand, 27828545 - 27828599
Alignment:
Q  192 tatttaatacttcacaaatttttatgagggtatatttgtaaaaacattcaaaaaa 246  Q
    |||||| || ||||||||||||||||| |||||||||||||||| ||||||||||    
T  27828545 tatttagtatttcacaaatttttatgaaggtatatttgtaaaaatattcaaaaaa 27828599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 93 - 320
Target Start/End: Complemental strand, 43320280 - 43320058
Alignment:
Q  93 cctatttataagaaaaagtcacaacttttaagatcat-ttattgcttaaaagacttttctagccctcgtttaatgtaggtattttcaatattagtgggtg 191  Q
    |||||||||||||||| ||||||||||||||| |    |||||| ||||||||||||||||||||   || |||||  || ||||      |||||  ||    
T  43320280 cctatttataagaaaatgtcacaacttttaaggtgtggttattgtttaaaagacttttctagcccctattcaatgtttgtctttt------tagtgaatg 43320187  T
Q  192 tatttaatacttcacaaatttttatgagggtatatttgtaaaaacattcaaaaaattacaacaactaataattgtattggttttgatgattttttgtttc 291  Q
    |||||||| |||| | | ||||||| ||||| |||||||||||| ||||||||| ||| |   | |||| |||  ||| ||||||||| ||||| ||||     
T  43320186 tatttaatgcttcgcgattttttataagggtgtatttgtaaaaatattcaaaaagttagacatattaattattacattagttttgatgttttttggtttt 43320087  T
Q  292 ttttctcatataaaggaccggagggagta 320  Q
    | |||| |||  |||||||||| ||||||    
T  43320086 tcttcttataataaggaccggaaggagta 43320058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 90 - 290
Target Start/End: Complemental strand, 48271899 - 48271700
Alignment:
Q  90 ggtcctatttataagaaaaagtcacaacttttaagatcat-ttattgcttaaaagacttttctagccctcgtttaatgtaggtattttcaatattagtgg 188  Q
    |||| |||||||||||||| |||||||||| ||| || |  |||||||||||||||| || ||| ||||| |||||  | |   |||| |||||||||      
T  48271899 ggtcatatttataagaaaatgtcacaacttctaaaatgaaattattgcttaaaagaccttcctatccctcctttaacat-gtcctttttaatattagtat 48271801  T
Q  189 gtgtatttaatacttcacaaatttttatgagggtatatttgtaaaaacattcaaaaaattacaacaactaataattgtattggttttgatgattttttgt 288  Q
    ||| ||||||| ||||| || |||  ||||||||||||||||| ||| |||| ||||  |||||||| | |||| || |||| |||||||| ||||| ||    
T  48271800 gtgcatttaatgcttcaaaactttccatgagggtatatttgtataaatattc-aaaagctacaacaatttataactgcattgattttgatgttttttggt 48271702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 221 - 317
Target Start/End: Original strand, 28695674 - 28695770
Alignment:
Q  221 gtatatttgtaaaaacattcaaaaaattacaacaactaataattgtattggttttgatgattttttgtttcttttctcatataaaggaccggaggga 317  Q
    ||||||||||||||| ||||||||| |||||  || |||| ||| ||||||||| ||||||||||  ||| | |||| |||| ||||||| ||||||    
T  28695674 gtatatttgtaaaaatattcaaaaagttacactaattaatgattatattggtttagatgatttttaatttttcttcttatattaaggaccagaggga 28695770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 94 - 149
Target Start/End: Original strand, 38363520 - 38363576
Alignment:
Q  94 ctatttataagaaaaagtcacaacttttaa-gatcatttattgcttaaaagactttt 149  Q
    ||||||||||||||||||  |||||||||| | ||||||||||||||||||||||||    
T  38363520 ctatttataagaaaaagttgcaacttttaaagttcatttattgcttaaaagactttt 38363576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 128 - 266
Target Start/End: Original strand, 49787779 - 49787919
Alignment:
Q  128 atttattgcttaaaagacttttctagccctcgtttaatgtaggtattttcaatattagtgggtgtatttaatacttcacaaatttttatgagggtatatt 227  Q
    |||||||| |||||| |||||| || ||||||||||||||  ||  ||| || |||| || || ||||||||| || ||||||||  |||||||| ||||    
T  49787779 atttattgtttaaaatacttttataaccctcgtttaatgtttgtccttttaaaattaatgagtatatttaatattttacaaatttcaatgagggtgtatt 49787878  T
Q  228 tgt--aaaaacattcaaaaaattacaacaactaataattgt 266  Q
    |||  ||| | ||||| ||||||||||  |||||| |||||    
T  49787879 tgtcaaaagatattcataaaattacaatgactaatcattgt 49787919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 202 - 317
Target Start/End: Complemental strand, 25294897 - 25294782
Alignment:
Q  202 ttcacaaatttttatgagggtatatttgtaaaaacattcaaaaaattacaacaactaataattgtattggttttgatgattttttgtttcttttctcata 301  Q
    ||||||| |||||||||| |||| ||| |||||| ||| ||| | || ||  || |||| ||||||||||| |||||| ||||| ||||  ||||| |||    
T  25294897 ttcacaattttttatgagagtatgtttataaaaatatttaaatagtttcattaattaatgattgtattggtattgatgttttttggttttgtttcttata 25294798  T
Q  302 taaaggaccggaggga 317  Q
      ||||||||||||||    
T  25294797 ataaggaccggaggga 25294782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 219 - 320
Target Start/End: Complemental strand, 32211843 - 32211740
Alignment:
Q  219 gggtatatttgtaaaaacattcaaaaaattacaacaactaataattgtattggttttgatgattttttgtttcttttctcata-ta-aaggaccggaggg 316  Q
    |||| |||||||||||| ||  |||||||||||  || |||| | || ||||||||||||| |||||||||| | |||| ||| || |||||||||||||    
T  32211843 gggtgtatttgtaaaaatataaaaaaaattacactaattaatgagtgcattggttttgatgtttttttgtttttcttcttatactataaggaccggaggg 32211744  T
Q  317 agta 320  Q
    ||||    
T  32211743 agta 32211740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 96 - 208
Target Start/End: Complemental strand, 25295198 - 25295085
Alignment:
Q  96 atttataagaaaaagtcacaacttttaagatc-atttattgcttaaaagacttttctagccctcgtttaatgtaggtattttcaatattagtgggtgtat 194  Q
    ||||||||||||| || |||||||||||| |  | |||||| ||||||||||||| || ||||| |||||||    | |||| ||||||||||||| |||    
T  25295198 atttataagaaaatgttacaacttttaaggtgtaattattgtttaaaagacttttttatccctcatttaatgcttctctttttaatattagtgggtttat 25295099  T
Q  195 ttaatacttcacaa 208  Q
    | |||  |||||||    
T  25295098 taaatgtttcacaa 25295085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 197 - 248
Target Start/End: Complemental strand, 52596671 - 52596619
Alignment:
Q  197 aatacttcacaaattttt-atgagggtatatttgtaaaaacattcaaaaaatt 248  Q
    |||||||||||| ||||| |||| |||||||| ||||||| ||||||||||||    
T  52596671 aatacttcacaatttttttatgatggtatattcgtaaaaatattcaaaaaatt 52596619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0015 (Bit Score: 91; Significance: 5e-44; HSPs: 1)
Name: scaffold0015
Description:

Target: scaffold0015; HSP #1
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 90 - 311
Target Start/End: Complemental strand, 38984 - 38763
Alignment:
Q  90 ggtcctatttataagaaaaagtcacaacttttaagatc-atttattgcttaaaagacttttctagccctcgtttaatgtaggtattttcaatattagtgg 188  Q
    |||| |||||||||||||||||||||| |||||||||  |||||||| |||||| | ||||||||||||  || ||||| | | || |||||||||||||    
T  38984 ggtcttatttataagaaaaagtcacaatttttaagatatatttattgtttaaaatatttttctagcccttattgaatgtcgtt-ttatcaatattagtgg 38886  T
Q  189 gtgtatttaatacttcacaaatttttatgagggtatatttgtaaaaacattcaaaaaattacaacaactaataattgtattggttttgatgattttttgt 288  Q
     | | ||||||| ||| |||||||||||||| |||||||||||||||||||||||||||| ||| ||||||| ||||| |||||  |||| |||||| ||    
T  38885 atatgtttaatagttcccaaatttttatgagagtatatttgtaaaaacattcaaaaaattgcaagaactaatgattgttttggtcgtgataatttttggt 38786  T
Q  289 ttcttttctcatataaaggaccg 311  Q
    ||||||| | ||| |||||||||    
T  38785 ttctttttttataaaaaggaccg 38763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0006 (Bit Score: 66; Significance: 4e-29; HSPs: 1)
Name: scaffold0006
Description:

Target: scaffold0006; HSP #1
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 102 - 285
Target Start/End: Original strand, 131735 - 131921
Alignment:
Q  102 aagaaaaagtcacaacttttaagatcatttattgcttaaaagacttttctagccctcgtttaatgtaggtattttcaatattagtgggtgtatttaat-- 199  Q
    ||||||||||||||||||| | |  ||||||||| | |||||||||||||| || ||  | || ||  || |||| ||||||||||| | ||||||||      
T  131735 aagaaaaagtcacaactttaaggtgcatttattgttcaaaagacttttctaaccttcaataaaagtttgtctttttaatattagtggttatatttaataa 131834  T
Q  200 -acttcacaaatttttatgagggtatatttgt-aaaaacattcaaaaaattacaacaactaataattgtattggttttgatgattttt 285  Q
     ||||||||||||||||||||||||||||||| |||||||||| |||||||||||  |||||| ||||| || |||||||||||||||    
T  131835 tacttcacaaatttttatgagggtatatttgtaaaaaacattc-aaaaattacaattactaatgattgtcttcgttttgatgattttt 131921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 64; Significance: 7e-28; HSPs: 20)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 98 - 320
Target Start/End: Original strand, 18705003 - 18705226
Alignment:
Q  98 ttataagaaaaagtcacaacttttaagatc-atttattgcttaaaagacttttctagccctcgtttaatgtaggtattttcaatattagtgggtgtattt 196  Q
    |||||||||||  ||| |||||||||| |  | ||||| |||||||||||||| || || |  ||||||||   | |||| ||||||| | |||||||||    
T  18705003 ttataagaaaacatcataacttttaaggtgtagttattacttaaaagacttttttaccctttatttaatgtttttgtttttaatattaataggtgtattt 18705102  T
Q  197 aatacttcacaaatttttatgagggtatatttgtaaaaacattcaaaaaattacaacaactaataattgtattggttttgatgattttttgtttcttttc 296  Q
    ||| |||||||| ||||||| ||| |||||||||||||| ||||||||| |||||  || ||||| |||||||||||| |||| ||||| |||| | |||    
T  18705103 aatgcttcacaactttttataaggatatatttgtaaaaatattcaaaaagttacactaattaatagttgtattggtttcgatgttttttggtttttcttc 18705202  T
Q  297 tcatataaaggaccggagggagta 320  Q
    | |||  |||||||||||| ||||    
T  18705203 ttataataaggaccggaggaagta 18705226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 91 - 320
Target Start/End: Complemental strand, 3629360 - 3629130
Alignment:
Q  91 gtcctatttataagaaaaagtcacaacttttaagatc-atttattgcttaaaagacttttctagccctcgtttaatgtaggtattttcaatattagtggg 189  Q
    |||| ||||||||||||| ||||||||||||||| |  | ||||| |||||||||||||| || ||||  |||||||   ||||||| ||||||||||      
T  3629360 gtccaatttataagaaaatgtcacaacttttaaggtgtagttattacttaaaagacttttgtatccctaatttaatgactgtatttttaatattagtgaa 3629261  T
Q  190 tgtatttaatacttcacaaatttttatgagggtatatttgtaaaaacattcaaaaaattacaacaactaataattgtattggttttgatgattttttgtt 289  Q
    ||||||||||  |||||||  || ||| ||| ||||||||||||||  || ||||| ||||||||| |||| ||   ||||||||||||| ||||| |||    
T  3629260 tgtatttaatgtttcacaacattctataaggttatatttgtaaaaatgtttaaaaagttacaacaattaattataacattggttttgatgttttttggtt 3629161  T
Q  290 tcttttctcatataaaggaccggagggagta 320  Q
    | || ||| |||  | |||||||||||||||    
T  3629160 ttttatcttataatagggaccggagggagta 3629130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 132 - 295
Target Start/End: Original strand, 2225619 - 2225782
Alignment:
Q  132 attgcttaaaagacttttctagccctcgtttaatgtaggtattttcaatattagtgggtgtatttaatacttcacaaatttttatgagggtatatttgta 231  Q
    |||| |||||||||||||||| |  |  ||||||||   | |||| ||||||||||| ||||||||||  ||||||| ||||||||| ||||||||||||    
T  2225619 attgtttaaaagacttttctaccatttatttaatgtttttgtttttaatattagtggttgtatttaatgtttcacaactttttatgaaggtatatttgta 2225718  T
Q  232 aaaacattcaaaaaattacaacaactaataattgtattggttttgatgattttttgtttctttt 295  Q
    |||| |||  |||| |||||  || ||||||||||||| ||||||||| ||||| |||| ||||    
T  2225719 aaaatatttcaaaagttacactaattaataattgtattagttttgatgttttttggtttttttt 2225782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 148 - 246
Target Start/End: Original strand, 14417911 - 14418009
Alignment:
Q  148 ttctagccctcgtttaatgtaggtattttcaatattagtgggtgtatttaatacttcacaaatttttatgagggtatatttgtaaaaacattcaaaaaa 246  Q
    ||||| |||| ||||||| |  ||||||| |||||||||||||||||||||| |||||||| ||||||||| |||| |||||||| || ||| ||||||    
T  14417911 ttctaccccttgtttaatatttgtattttaaatattagtgggtgtatttaatgcttcacaattttttatgaaggtaaatttgtaagaatattaaaaaaa 14418009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 90 - 287
Target Start/End: Original strand, 6688783 - 6688983
Alignment:
Q  90 ggtcctatttataagaaaaagtcacaacttttaagatc-atttattgcttaaaagacttttctagccctcgtttaatgtaggtattttcaatat--tagt 186  Q
    |||||||  ||||||||||  |||||||||||||| |  | |||||| |||||||||||||||| ||||  |||||| |   | |||| |||||  ||||    
T  6688783 ggtcctaaatataagaaaatatcacaacttttaaggtgtagttattgtttaaaagacttttctatcccttatttaatatgtttgtttttaatatattagt 6688882  T
Q  187 gggtgtatttaatacttcacaaatttttatgagggtatatttgtaaaaacattcaaaaaattacaacaactaataattgtattggttttgatgatttttt 286  Q
      ||||||||||| ||| |||| ||||||||||||||||||||||| |  || |||||| |||||  || |||| |||| ||||||||| ||| ||||||    
T  6688883 aagtgtatttaatgctttacaattttttatgagggtatatttgtaatagtatgcaaaaagttacactaattaatgattgcattggttttaatgttttttt 6688982  T
Q  287 g 287  Q
    |    
T  6688983 g 6688983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 130 - 313
Target Start/End: Complemental strand, 11691168 - 11690987
Alignment:
Q  130 ttattgcttaaaagacttttctagccctcgtttaatgtaggtattttcaatattagtgggtgtatttaatacttcacaaatttttatgagggtatatttg 229  Q
    ||||| ||||||||||||  ||| ||||| ||||||||   | |||| ||| |||||| |||||||||||| |||| ||  |||||||||| | ||||||    
T  11691168 ttatttcttaaaagactt--ctatccctcatttaatgtttctctttttaatcttagtgagtgtatttaatatttcataatattttatgaggatgtatttg 11691071  T
Q  230 taaaaacattcaaaaaattacaacaactaataattgtattggttttgatgattttttgtttcttttctcatataaaggaccgga 313  Q
    |||||| ||||||||| ||| | ||| ||||||||| |||  |||||||  ||||| ||||  ||||| |||  ||||||||||    
T  11691070 taaaaatattcaaaaagttaaatcaattaataattgcattaattttgatattttttggttttatttcttataataaggaccgga 11690987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 95 - 248
Target Start/End: Original strand, 4449438 - 4449592
Alignment:
Q  95 tatttataagaaaaagtcacaacttttaagatc---atttattgcttaaaagacttttctagccctcgttt-aatgtaggtattttcaatattagtgggt 190  Q
    |||||||||||||| ||||||| ||||||| |    ||||||| |||||||||||||| || ||||| ||| |||||  || |||| ||| ||| ||| |    
T  4449438 tatttataagaaaatgtcacaatttttaaggtgtgtatttatttcttaaaagactttttta-ccctcatttcaatgtttgtctttttaatcttaatggtt 4449536  T
Q  191 gtatttaatacttcacaaatttttatgagggtatatttgtaaaaacattcaaaaaatt 248  Q
    |||||||||   |||||| || | ||||||||||||||||||||| ||||||||||||    
T  4449537 gtatttaatg--tcacaatttctcatgagggtatatttgtaaaaatattcaaaaaatt 4449592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 130 - 250
Target Start/End: Complemental strand, 11983692 - 11983573
Alignment:
Q  130 ttattgcttaaaagacttttctagccctcgtttaatgtaggtattttcaatattagtgggtgtatttaatacttcacaaatttttatgagggtatatttg 229  Q
    |||||| |||||||| |||| || ||||| ||||||||   | |||| ||||||||||| ||||||||||  ||||| ||||||||  || |||||||||    
T  11983692 ttattgtttaaaagatttttttacccctcatttaatgtttctctttttaatattagtggatgtatttaatgtttcac-aatttttacaagagtatatttg 11983594  T
Q  230 taaaaacattcaaaaaattac 250  Q
    |||||  ||||||||| ||||    
T  11983593 taaaagtattcaaaaagttac 11983573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 92 - 235
Target Start/End: Original strand, 27193009 - 27193153
Alignment:
Q  92 tcctatttataagaaaaagtcacaacttttaagat-catttattgcttaaaagacttttctagccctcgtttaatgtaggtattttcaatattagtgggt 190  Q
    ||||||||||||| ||| |||||||||||||||||  | |||||| ||||||||||||| || || || ||||||| |  | |||| ||||| | || ||    
T  27193009 tcctatttataaggaaatgtcacaacttttaagatatagttattgtttaaaagacttttttatccttcatttaatgcatctctttttaatataactgagt 27193108  T
Q  191 gtatttaatacttcacaaatttttatgagggtatatttgtaaaaa 235  Q
     | ||||||  |||| || ||||||||| | ||||||||||||||    
T  27193109 atttttaatgtttcataattttttatgatgatatatttgtaaaaa 27193153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 198 - 286
Target Start/End: Complemental strand, 33432873 - 33432786
Alignment:
Q  198 atacttcacaaatttttatgagggtatatttgtaaaaacattcaaaaaattacaacaactaataattgtattggttttgatgatttttt 286  Q
    |||| |||||||||| ||||| |||||||| |||| || ||| ||||||||||||||| |||| ||||| ||| |||||||| ||||||    
T  33432873 atacatcacaaatttctatgaaggtatattcgtaagaatatt-aaaaaattacaacaattaatgattgtcttgattttgatgttttttt 33432786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 320 - 367
Target Start/End: Original strand, 11128593 - 11128640
Alignment:
Q  320 aactgtttaacataagtgaccaccgtaagaccaacaacaatattccag 367  Q
    |||||||||  ||||||||||||||||||||||| |||||||||||||    
T  11128593 aactgtttaggataagtgaccaccgtaagaccaataacaatattccag 11128640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 173 - 235
Target Start/End: Original strand, 7735834 - 7735896
Alignment:
Q  173 ttttcaatattagtgggtgtatttaatacttcacaaatttttatgagggtatatttgtaaaaa 235  Q
    |||| |||||||| |||||||||||||  || |||| ||||||| ||||||||||||||||||    
T  7735834 tttttaatattagcgggtgtatttaatgtttgacaattttttataagggtatatttgtaaaaa 7735896  T

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Target: chr5; HSP #13
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 189 - 235
Target Start/End: Original strand, 14917819 - 14917865
Alignment:
Q  189 gtgtatttaatacttcacaaatttttatgagggtatatttgtaaaaa 235  Q
    ||||||||||| |||||||| |||||| |||||||||||||||||||    
T  14917819 gtgtatttaattcttcacaattttttacgagggtatatttgtaaaaa 14917865  T

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Target: chr5; HSP #14
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 171 - 278
Target Start/End: Complemental strand, 29948137 - 29948030
Alignment:
Q  171 tattttcaatattagtgggtgtatttaatacttcacaaatttttatgagggtatatttgtaaaaacattcaaaaaattacaacaactaataattgtattg 270  Q
    |||||| ||||||| || |||||||||||  || | || ||||||| || ||||||||||||||| ||  ||||| |||||  || |||| |||| ||||    
T  29948137 tatttttaatattaatgagtgtatttaatgttttataattttttattagagtatatttgtaaaaatatcaaaaaagttacattaaataatgattgcattg 29948038  T
Q  271 gttttgat 278  Q
    ||||||||    
T  29948037 gttttgat 29948030  T

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Target: chr5; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 94 - 239
Target Start/End: Original strand, 17693562 - 17693705
Alignment:
Q  94 ctatttataagaaaaagtcacaacttttaagatc-atttattgcttaaaagacttt-tctagccctcgtttaatgtaggtattttcaatattagtgggtg 191  Q
    ||||||||||||||| ||||||| |||||||||  ||||||| | ||||||||||| | ||| |||| || |||||   |  ||| |||| |||||| |     
T  17693562 ctatttataagaaaatgtcacaatttttaagatgtatttattacataaaagactttctttagtcctcattcaatgtttatcattttaatactagtggata 17693661  T
Q  192 tatttaatacttcacaaatttttatgagggtatatttgtaaaaacatt 239  Q
    ||||    |||||| ||| ||||| |||||||||||||||||||||||    
T  17693662 tatt----acttcataaaattttacgagggtatatttgtaaaaacatt 17693705  T

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Target: chr5; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 202 - 260
Target Start/End: Complemental strand, 19090281 - 19090223
Alignment:
Q  202 ttcacaaatttttatgagggtatatttgtaaaaacattcaaaaaattacaacaactaat 260  Q
    ||||||||||| | ||||| ||||||| |||||| ||| ||||||||||||||| ||||    
T  19090281 ttcacaaatttctttgaggatatatttataaaaatattaaaaaaattacaacaattaat 19090223  T

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Target: chr5; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 193 - 278
Target Start/End: Original strand, 17686332 - 17686417
Alignment:
Q  193 atttaatacttcacaaatttttatgagggtatatttgtaaaaacattcaaaaaattacaacaactaataattgtattggttttgat 278  Q
    ||||||||||||| |  ||||||||| |||||| ||||||||||||| ||||  ||  || ||||||| ||| ||| |||||||||    
T  17686332 atttaatacttcatatgtttttatgaaggtatacttgtaaaaacatttaaaacgttgtaataactaatgattttataggttttgat 17686417  T

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Target: chr5; HSP #18
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 91 - 123
Target Start/End: Complemental strand, 1963010 - 1962978
Alignment:
Q  91 gtcctatttataagaaaaagtcacaacttttaa 123  Q
    ||||||||||||||||||||| |||||||||||    
T  1963010 gtcctatttataagaaaaagtgacaacttttaa 1962978  T

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Target: chr5; HSP #19
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 90 - 122
Target Start/End: Original strand, 23010688 - 23010720
Alignment:
Q  90 ggtcctatttataagaaaaagtcacaactttta 122  Q
    ||||||||||||||||||||||||||| |||||    
T  23010688 ggtcctatttataagaaaaagtcacaaatttta 23010720  T

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Target: chr5; HSP #20
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 187 - 278
Target Start/End: Original strand, 39569144 - 39569233
Alignment:
Q  187 gggtgtatttaatacttcacaaatttttatgagggtatatttgtaaaaacattcaaaaaattacaacaactaataattgtattggttttgat 278  Q
    |||| |||| |||| || |||||||||||||    |||||||||||||||||||||||| ||  ||||| |||||||| | ||| |||||||    
T  39569144 gggtatattaaatatttgacaaatttttatgtaaatatatttgtaaaaacattcaaaaagtt--aacaattaataattattttgattttgat 39569233  T

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Target: scaffold0088 (Bit Score: 61; Significance: 4e-26; HSPs: 1)
Name: scaffold0088
Description:

Target: scaffold0088; HSP #1
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 94 - 273
Target Start/End: Original strand, 51273 - 51453
Alignment:
Q  94 ctatttataagaaaaagtcacaacttttaagatc-atttattgcttaaaagacttttctagccctcgtttaatgtaggtattttcaatattagtgggtgt 192  Q
    ||||||||||| ||| ||||||||||||||| |  ||||||||||||||||| |||| || ||||| ||||||     | |||| ||| ||||| |||||    
T  51273 ctatttataagtaaatgtcacaacttttaaggtgtatttattgcttaaaagatttttttatccctcatttaataattctctttttaattttagttggtgt 51372  T
Q  193 atttaatacttcacaaatttttatgagggtatatttgtaaaaacattcaaaaaattacaacaactaataattgtattggtt 273  Q
    |||||||  ||||||| |||||||||||||||| ||||||||| ||||||||  |||||  || |||| ||||||||||||    
T  51373 atttaatgtttcacaactttttatgagggtataattgtaaaaatattcaaaatgttacattaattaatgattgtattggtt 51453  T

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Target: scaffold0024 (Bit Score: 60; Significance: 2e-25; HSPs: 1)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 94 - 320
Target Start/End: Original strand, 154340 - 154567
Alignment:
Q  94 ctatttataagaaaaagtcacaacttttaagatc-atttattgcttaaaagacttttctagccctcgtttaatgtaggtattttcaatattagtgggtgt 192  Q
    |||||||||||||||  | |||||||||||| |  | |||||| ||||||||| ||| || |  |  ||||||||  || |||| |||||| ||||||||    
T  154340 ctatttataagaaaatattacaacttttaaggtgtagttattgtttaaaagacctttttaccttttatttaatgtttgtctttttaatattggtgggtgt 154439  T
Q  193 atttaatacttcacaaatttttatgagggtatatttgtaaaaacattcaaaaaattacaacaactaataattgtattggttttgatgattttttgtttct 292  Q
    ||||||| |||||||  |||||||||||| || |||||||||| |||||| || |||||  || |||| | |||||||||||||||| |||||||||| |    
T  154440 atttaatgcttcacagttttttatgagggcatgtttgtaaaaatattcaacaagttacactaattaatgagtgtattggttttgatgtttttttgttttt 154539  T
Q  293 tttctcatataaaggaccggagggagta 320  Q
     || | |||  |||||||||| ||||||    
T  154540 ctttttataataaggaccggaaggagta 154567  T

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Target: scaffold1809 (Bit Score: 57; Significance: 1e-23; HSPs: 1)
Name: scaffold1809
Description:

Target: scaffold1809; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 90 - 285
Target Start/End: Complemental strand, 649 - 453
Alignment:
Q  90 ggtcctatttataagaaaaagtcacaacttttaagatc-atttattgcttaaaagacttttctagccctcgtttaatgtaggtattttcaatattagtgg 188  Q
    ||||||| |||||||||||||||||||| |||||| |  | |||||| ||||||||||||| || ||||| |||||||   ||  ||| |||||||||||    
T  649 ggtcctaattataagaaaaagtcacaacatttaaggtgtagttattgtttaaaagacttttttatccctcatttaatgattgtcgttttaatattagtgg 550  T
Q  189 gtgtatttaatacttcacaaatttttatgagggtatatttgtaaaaacattcaaaaaattacaacaactaataattgtattggttttgatgattttt 285  Q
     |  |||||||  |||||||  || ||| ||||||||||||||||||  || ||||| ||||||||| |||| || |||||||| |||||| |||||    
T  549 atccatttaatgtttcacaacattctataagggtatatttgtaaaaatctttaaaaagttacaacaattaatgatggtattggtattgatgtttttt 453  T

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Target: scaffold0836 (Bit Score: 56; Significance: 4e-23; HSPs: 1)
Name: scaffold0836
Description:

Target: scaffold0836; HSP #1
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 90 - 316
Target Start/End: Original strand, 3018 - 3245
Alignment:
Q  90 ggtcctatttataagaaaaagtcacaacttttaagat-catttattgcttaaaagacttttctagccctcgtttaatgtaggtattttcaatattagtgg 188  Q
    ||||||||||||||||||| ||||||||||||||| |  | |||||| |||||||||||||||| ||||| || |||     | |||| |||||||||||    
T  3018 ggtcctatttataagaaaatgtcacaacttttaaggtgtagttattgtttaaaagacttttctatccctcattcaataattctctttttaatattagtgg 3117  T
Q  189 gtgtatttaatacttcacaaatttttatgagggtatatttgtaaaaacattcaaaaaattacaacaactaataattgtattggttttgatgattttttgt 288  Q
     ||||||||||  |||||||  || ||| |||| || ||||||||||  || |||||  ||||| || |||| |  ||||||||||||||| ||||| ||    
T  3118 atgtatttaatgtttcacaacattctataagggcatgtttgtaaaaatgtttaaaaaggtacaagaattaatgacagtattggttttgatgttttttggt 3217  T
Q  289 ttcttttctcatataaaggaccggaggg 316  Q
    || | |||| |||  |||||||||||||    
T  3218 ttttcttcttataataaggaccggaggg 3245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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