View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17069_high_7 (Length: 380)
Name: NF17069_high_7
Description: NF17069
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17069_high_7 |
 | |
|
| [»] chr1 (1 HSPs) |
| |
|
Alignment Details
Target: chr1 (Bit Score: 368; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 368; E-Value: 0
Query Start/End: Original strand, 1 - 380
Target Start/End: Original strand, 32283463 - 32283842
Alignment:
| Q |
1 |
aggattttaaagtatagcatttgacaagaaattcatacttaagtataactagaacaaattatagttagtcataaattttaaaaggaaaatgctaacaagt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32283463 |
aggattttaaagtatagcatttgacaagaaattcatacttaagtataactagaacagattatagttagtcataaattttaaaaggaaaatgctaacaagt |
32283562 |
T |
|
| Q |
101 |
gcccttgggcatttgccaaaagtgaagctactttcaaaacataaactgatataatcttagttatgacaacaaactctcttttccaaatctcaagaaagtt |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32283563 |
gcccttgggcatttgccaaaagtgaagctactttcaaaacataaactgatataatcttagttatgacaacaaactctcttttccaaatctcaagaaagtt |
32283662 |
T |
|
| Q |
201 |
ttgacaaattgatttgggaaaaaagaatgactgttttagtatactcattattgcatttggccacattcattttcgaggaaagtacatgaaccgttcaatc |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
32283663 |
ttgacaaattgatttgggaaaaaagaatgattgttttagtatactcattattgcatttggccacattcattttcgaggaatgtacatgaaccgttcaatc |
32283762 |
T |
|
| Q |
301 |
tgctttcatttcccggtagtttcacttcgcttgtaagctccaaaagctgaacatctaagaatatcaaatttctatttccc |
380 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32283763 |
tgctttcatttcccggtagtttcacttcgcttgtaagctccaaaagctgaacatctaagaatatcaaatttctatttccc |
32283842 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University