View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17069_low_1 (Length: 555)

Name: NF17069_low_1
Description: NF17069
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17069_low_1
NF17069_low_1
[»] chr2 (4 HSPs)
chr2 (10-338)||(13945954-13946296)
chr2 (10-338)||(14087143-14087485)
chr2 (338-532)||(13945693-13945887)
chr2 (338-532)||(14086882-14087076)
[»] chr6 (1 HSPs)
chr6 (216-254)||(27743829-27743867)


Alignment Details
Target: chr2 (Bit Score: 265; Significance: 1e-147; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 265; E-Value: 1e-147
Query Start/End: Original strand, 10 - 338
Target Start/End: Complemental strand, 13946296 - 13945954
Alignment:
Q  10 agatgaatgatcaaccatgcacccattgaacgacatggactaacacattccattgagatagtaggagaggcaggcttttcagtcttt--gggtgagtttc 107  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||    
T  13946296 agatgaatgatcaaccatgcacccattgaacgacatggactaacacattccattgagatagtaggagaggcaggcttttcagtcttttggggtgagtttc 13946197  T
Q  108 atatgtctcacatttttgcaagtgaaggacttaacaagatttcatca---------aatagagga-cgttgaaacgctcgaaatattttgtgagcaacat 197  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||         ||||||||| ||||||||||||||||||||||||||||||||||    
T  13946196 atatgtctcacatttttgcaagtgaaggacttgacaagatttcatcatcttcatcaaatagaggaacgttgaaacgctcgaaatattttgtgagcaacat 13946097  T
Q  198 tccatattgaacaatattgtttttgtatttggagtttgaggcaatgatcatgtgttggaggattatgtgggcagga--tttatttttgttttagtagcga 295  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||  ||| ||||| ||||||||||||    
T  13946096 tccatattgaacaatattgtttttgtatttggagtttgaggcaatgatcatgtgttggaggattatgtgggcaagattttttttttttttttagtagcga 13945997  T
Q  296 cgtgatgcatgagaagtaaatcgttgtcagtaaccttttattt 338  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  13945996 cgtgatgcatgagaagtaaatcgttgtcagtaaccttttattt 13945954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 265; E-Value: 1e-147
Query Start/End: Original strand, 10 - 338
Target Start/End: Complemental strand, 14087485 - 14087143
Alignment:
Q  10 agatgaatgatcaaccatgcacccattgaacgacatggactaacacattccattgagatagtaggagaggcaggcttttcagtcttt--gggtgagtttc 107  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||    
T  14087485 agatgaatgatcaaccatgcacccattgaacgacatggactaacacattccattgagatagtaggagaggcaggcttttcagtcttttggggtgagtttc 14087386  T
Q  108 atatgtctcacatttttgcaagtgaaggacttaacaagatttcatca---------aatagagga-cgttgaaacgctcgaaatattttgtgagcaacat 197  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||         ||||||||| ||||||||||||||||||||||||||||||||||    
T  14087385 atatgtctcacatttttgcaagtgaaggacttgacaagatttcatcatcttcatcaaatagaggaacgttgaaacgctcgaaatattttgtgagcaacat 14087286  T
Q  198 tccatattgaacaatattgtttttgtatttggagtttgaggcaatgatcatgtgttggaggattatgtgggcagga--tttatttttgttttagtagcga 295  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||  ||| ||||| ||||||||||||    
T  14087285 tccatattgaacaatattgtttttgtatttggagtttgaggcaatgatcatgtgttggaggattatgtgggcaagattttttttttttttttagtagcga 14087186  T
Q  296 cgtgatgcatgagaagtaaatcgttgtcagtaaccttttattt 338  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  14087185 cgtgatgcatgagaagtaaatcgttgtcagtaaccttttattt 14087143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 191; E-Value: 1e-103
Query Start/End: Original strand, 338 - 532
Target Start/End: Complemental strand, 13945887 - 13945693
Alignment:
Q  338 tttggaggcaatggaaaattcatagattatttatgagttgatgttgaacatttatcagattaggtcggttttgcacttgatttccatggtcttggaggac 437  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13945887 tttggaggcaatggaaaattcatagattatttatgagttgatgttgaacatttatcagattaggtcggttttgcacttgatttccatggtcttggaggac 13945788  T
Q  438 ttcgaggagattctttgtttggagaatcttcaagagaattttcatcctttttgtttgagtgaatttgactctcttcttcatcttcttcaatgatc 532  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13945787 ttcgaggagattctttgtttggagaatcttgaagagaattttcatcctttttgtttgagtgaatttgactctcttcttcatcttcttcaatgatc 13945693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 191; E-Value: 1e-103
Query Start/End: Original strand, 338 - 532
Target Start/End: Complemental strand, 14087076 - 14086882
Alignment:
Q  338 tttggaggcaatggaaaattcatagattatttatgagttgatgttgaacatttatcagattaggtcggttttgcacttgatttccatggtcttggaggac 437  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14087076 tttggaggcaatggaaaattcatagattatttatgagttgatgttgaacatttatcagattaggtcggttttgcacttgatttccatggtcttggaggac 14086977  T
Q  438 ttcgaggagattctttgtttggagaatcttcaagagaattttcatcctttttgtttgagtgaatttgactctcttcttcatcttcttcaatgatc 532  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14086976 ttcgaggagattctttgtttggagaatcttgaagagaattttcatcctttttgtttgagtgaatttgactctcttcttcatcttcttcaatgatc 14086882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 216 - 254
Target Start/End: Original strand, 27743829 - 27743867
Alignment:
Q  216 gtttttgtatttggagtttgaggcaatgatcatgtgttg 254  Q
    ||||||||||||||| |||||||||||||||||||||||    
T  27743829 gtttttgtatttggaatttgaggcaatgatcatgtgttg 27743867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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