View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17069_low_10 (Length: 327)
Name: NF17069_low_10
Description: NF17069
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17069_low_10 |
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| [»] chr4 (4 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 308; Significance: 1e-173; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 308; E-Value: 1e-173
Query Start/End: Original strand, 16 - 327
Target Start/End: Complemental strand, 45319102 - 45318791
Alignment:
| Q |
16 |
aatatagttgggatctgcatgttttgaagctagaggagaagcatttgaacttcttcttgatttctttgtcccttccaacgaaattacaatttctcctgaa |
115 |
Q |
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| T |
45319102 |
aatatagttgggatctgcatgttttgaagctagaggagaagcatttgaacttcttcttgatttctttgtcccttccaacgaaattacaatttctcctgaa |
45319003 |
T |
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| Q |
116 |
acattggttttcctttccctccttttctgtgatgtaatccatggttttgtttcagtggcatgctgaataccatatttgcataaatcatggcaggaactcg |
215 |
Q |
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| T |
45319002 |
acattggttttcctttccctccttttctgtgatgtactccatggttttgtttcagtggcatgctgaataccatatttgcataaatcatggcaggaactcg |
45318903 |
T |
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| Q |
216 |
cacgatcacgaagataacgtgaaagaatcttagccggaccttttgtgatagttattccctcgttaggatttgctttcttatcatcatattcagcctcaat |
315 |
Q |
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| T |
45318902 |
cacgatcacgaagataacgtgaaagaatcttagccggaccttttgtgatagttattccctcgttaggatttgctttcttatcatcatattcagcctcaat |
45318803 |
T |
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| Q |
316 |
tttctcaggctc |
327 |
Q |
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| T |
45318802 |
tttctcaggctc |
45318791 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 279 - 327
Target Start/End: Complemental strand, 45318470 - 45318422
Alignment:
| Q |
279 |
taggatttgctttcttatcatcatattcagcctcaattttctcaggctc |
327 |
Q |
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| T |
45318470 |
taggatttgctttcttctcatcattttcagcctcaattttctcaggctc |
45318422 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 279 - 323
Target Start/End: Complemental strand, 45318371 - 45318327
Alignment:
| Q |
279 |
taggatttgctttcttatcatcatattcagcctcaattttctcag |
323 |
Q |
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| T |
45318371 |
taggattttttttcttatcatcatcttcagcctcaattttctcag |
45318327 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 295 - 327
Target Start/End: Complemental strand, 45318547 - 45318515
Alignment:
| Q |
295 |
atcatcatattcagcctcaattttctcaggctc |
327 |
Q |
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| T |
45318547 |
atcatcatcttcagcctcaattttctcaggctc |
45318515 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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