View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17069_low_12 (Length: 316)
Name: NF17069_low_12
Description: NF17069
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17069_low_12 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 296; Significance: 1e-166; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 296; E-Value: 1e-166
Query Start/End: Original strand, 7 - 314
Target Start/End: Complemental strand, 49510793 - 49510486
Alignment:
| Q |
7 |
tttgggatgacagaacttctgttcctgactttaagaaagatggcttgatggcaactcatgatcaagaaacagcagagtattttagaaacacaaatgtcca |
106 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49510793 |
tttgggatgacagaacttctgttcctgactttaagaaagatggcttgatggcaactcatgatcaagaaacagcagagtattttagaaacacaaatgtcca |
49510694 |
T |
|
| Q |
107 |
ttgtgttttgtgcccgcgtaaccctggtgatggaagaagtatagttcaaggttttgaaatttcaactatgttcactcatcaccagaagactataattgtt |
206 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49510693 |
ttgtgttttgtgcccgcgtaaacctggtgatggaagaagtatagttcaaggttttgaaattttaactatgttcactcatcaccagaagactataattgtt |
49510594 |
T |
|
| Q |
207 |
gacagcaaagtcgctagttctgcacaatgggagaagagaacaatcacaagttttgttggtggtattgatctttgtgatgggagatatgataccatggaac |
306 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49510593 |
gacagcaaagtcgctagttttgcacaatgggagaagagaacaatcacaagttttgttggtggtattgatctttgtgatgggagatatgataccatggaac |
49510494 |
T |
|
| Q |
307 |
atcctttg |
314 |
Q |
| |
|
|||||||| |
|
|
| T |
49510493 |
atcctttg |
49510486 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 7 - 208
Target Start/End: Complemental strand, 49521737 - 49521536
Alignment:
| Q |
7 |
tttgggatgacagaacttctgttcctgactttaagaaagatggcttgatggcaactcatgatcaagaaacagcagagtattttagaaacacaaatgtcca |
106 |
Q |
| |
|
|||||||||||||||| |||||||| | ||||||||||| || ||||||| ||| ||||| |||||||| ||||||||||||| |||||||| || || |
|
|
| T |
49521737 |
tttgggatgacagaacctctgttccggcttttaagaaagacggtttgatgggaacacatgaccaagaaactgcagagtattttaagaacacaaaggtaca |
49521638 |
T |
|
| Q |
107 |
ttgtgttttgtgcccgcgtaaccctggtgatggaagaagtatagttcaaggttttgaaatttcaactatgttcactcatcaccagaagactataattgtt |
206 |
Q |
| |
|
||||||||| || ||||||||||||| || ||||| ||| ||||||||||||||||||| |||||||||||||||||||||||| ||||||||| ||||| |
|
|
| T |
49521637 |
ttgtgttttatgtccgcgtaaccctgatggtggaaaaagcatagttcaaggttttgaaacttcaactatgttcactcatcaccaaaagactatagttgtt |
49521538 |
T |
|
| Q |
207 |
ga |
208 |
Q |
| |
|
|| |
|
|
| T |
49521537 |
ga |
49521536 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 267 - 314
Target Start/End: Complemental strand, 49521483 - 49521436
Alignment:
| Q |
267 |
ggtattgatctttgtgatgggagatatgataccatggaacatcctttg |
314 |
Q |
| |
|
|||||||||||||| ||||| ||||||||||| ||||||||||||||| |
|
|
| T |
49521483 |
ggtattgatctttgcgatggaagatatgatacaatggaacatcctttg |
49521436 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 7 - 76
Target Start/End: Original strand, 44661973 - 44662042
Alignment:
| Q |
7 |
tttgggatgacagaacttctgttcctgactttaagaaagatggcttgatggcaactcatgatcaagaaac |
76 |
Q |
| |
|
|||||||||| ||||| || |||||| || || |||||||| |||||||| ||||||||||||||||| |
|
|
| T |
44661973 |
tttgggatgatagaacgtcggttcctctgttaaaaaaagatgggttgatggctactcatgatcaagaaac |
44662042 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University