View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17069_low_15 (Length: 299)

Name: NF17069_low_15
Description: NF17069
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17069_low_15
NF17069_low_15
[»] chr7 (12 HSPs)
chr7 (23-291)||(36221014-36221282)
chr7 (25-291)||(36217021-36217295)
chr7 (33-178)||(35982416-35982561)
chr7 (33-178)||(36003828-36003973)
chr7 (31-184)||(36226293-36226446)
chr7 (55-266)||(35958415-35958634)
chr7 (52-266)||(35977867-35978089)
chr7 (52-266)||(35999279-35999501)
chr7 (52-184)||(35947207-35947339)
chr7 (209-267)||(35973898-35973956)
chr7 (209-267)||(35995310-35995368)
chr7 (216-266)||(35926323-35926373)
[»] chr1 (2 HSPs)
chr1 (216-262)||(18126298-18126344)
chr1 (31-160)||(18126105-18126234)


Alignment Details
Target: chr7 (Bit Score: 224; Significance: 1e-123; HSPs: 12)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 23 - 291
Target Start/End: Complemental strand, 36221282 - 36221014
Alignment:
Q  23 cgattctcgcaagtccaaaccttgtcccgtcagctgccaccttattcaatctatttctaatctctttgattttatgtgacatcctaaaacggaaagctgg 122  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |    
T  36221282 cgattctcacaagtccaaaccttgtcccgtcagctgccaccttattcaatctatctctaatctctttgattttatgtgacatcctaaaacggaaagctag 36221183  T
Q  123 tggatttgaggaagaaaacaagtggcataccttcattcgagtgctgccagaagctttcacaaattgnnnnnnncttgtcttgcaactcaaatccatcttc 222  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||        |||||||||||||||||||||||||||    
T  36221182 tggatttgaggaagaaaacaagtggcataccttcattcgagtgctgccagaagctttcacaattttattttttcttgtcttgcaactcaaatccatcttc 36221083  T
Q  223 agcatcatagcagatgttttgtacctgcctcaaccattcacgcagagcatgttgttggttcttcatctc 291  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  36221082 agcatcatagcagatgttttgtacctgcctcaaccattcacgcagagcatgttgttggttcttcttctc 36221014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 99; E-Value: 7e-49
Query Start/End: Original strand, 25 - 291
Target Start/End: Complemental strand, 36217295 - 36217021
Alignment:
Q  25 attctcgcaagtccaaaccttgtcccgtcagctgccaccttattcaatctatttctaatctctttgattttatgtgacatcctaaaacggaaagctggtg 124  Q
    |||||| ||||||||||| | ||||| ||||||||||| |||| |||||||| ||||||||||||||||| | ||||||||||||||||||||||  | |    
T  36217295 attctcacaagtccaaacttggtcccatcagctgccactttatccaatctatctctaatctctttgatttgacgtgacatcctaaaacggaaagcaagcg 36217196  T
Q  125 gatttgaggaagaaaacaagtggcataccttcattcgagtgctgccagaagctttcacaaattgnnnnnnncttgtcttgcaactcaaatc--------- 215  Q
    |||| ||||||||||| ||||||||||||||||  || ||||| ||||||||||  ||||||||       | ||||||||||||||||||             
T  36217195 gattagaggaagaaaagaagtggcataccttcaaccgtgtgcttccagaagcttcaacaaattgctttctcc-tgtcttgcaactcaaatccatccaata 36217097  T
Q  216 catcttcagcatcatagcagatgttttgtacctgcctcaaccattcacgcagagcatgttgttggttcttcatctc 291  Q
    |||||||||||||||||||||||||||| | |||||| |||||||||| ||  ||||||||  |||||||| ||||    
T  36217096 catcttcagcatcatagcagatgttttgaatctgccttaaccattcacacaaggcatgttgccggttcttcttctc 36217021  T

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Target: chr7; HSP #3
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 33 - 178
Target Start/End: Original strand, 35982416 - 35982561
Alignment:
Q  33 aagtccaaaccttgtcccgtcagctgccaccttattcaatctatttctaatctctttgattttatgtgacatcctaaaacggaaagctggtggatttgag 132  Q
    |||||||||| | ||||| ||||||||||||||||  |||||||| ||||| |||||||||  ||||| |||||||| ||| |||||  ||||||| |||    
T  35982416 aagtccaaacttagtcccatcagctgccaccttatctaatctattcctaatttctttgattcgatgtgccatcctaagacgaaaagcaagtggattagag 35982515  T
Q  133 gaagaaaacaagtggcataccttcattcgagtgctgccagaagctt 178  Q
    |||||||| ||||||| ||||||| | |||||||||||||||||||    
T  35982516 gaagaaaagaagtggcgtaccttcgtccgagtgctgccagaagctt 35982561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 33 - 178
Target Start/End: Original strand, 36003828 - 36003973
Alignment:
Q  33 aagtccaaaccttgtcccgtcagctgccaccttattcaatctatttctaatctctttgattttatgtgacatcctaaaacggaaagctggtggatttgag 132  Q
    |||||||||| | ||||| ||||||||||||||||  |||||||| ||||| |||||||||  ||||| |||||||| ||| |||||  ||||||| |||    
T  36003828 aagtccaaacttagtcccatcagctgccaccttatctaatctattcctaatttctttgattcgatgtgccatcctaagacgaaaagcaagtggattagag 36003927  T
Q  133 gaagaaaacaagtggcataccttcattcgagtgctgccagaagctt 178  Q
    |||||||| ||||||| ||||||| | |||||||||||||||||||    
T  36003928 gaagaaaagaagtggcgtaccttcgtccgagtgctgccagaagctt 36003973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 31 - 184
Target Start/End: Original strand, 36226293 - 36226446
Alignment:
Q  31 gcaagtccaaaccttgtcccgtcagctgccaccttattcaatctatttctaatctctttgattttatgtgacatcctaaaacggaaagctggtggatttg 130  Q
    |||||||||||||| ||||| |||||||||||||||||||||||||  |||||||||||||||  |  || |||| |||||||||||||  ||||| | |    
T  36226293 gcaagtccaaacctagtcccatcagctgccaccttattcaatctatccctaatctctttgattcgacatgccatcttaaaacggaaagcaagtggactag 36226392  T
Q  131 aggaagaaaacaagtggcataccttcattcgagtgctgccagaagctttcacaa 184  Q
    |||||||||| || |||| ||||||||| | ||||||||  ||||||| |||||    
T  36226393 aggaagaaaaaaattggcgtaccttcatcctagtgctgcatgaagcttccacaa 36226446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 55 - 266
Target Start/End: Original strand, 35958415 - 35958634
Alignment:
Q  55 gctgccaccttattcaatctatttctaatctctttgattttatgtgacatcctaaaacggaaagctggtggatttgaggaagaaaacaagtggcatacct 154  Q
    ||||||||||||| ||||||||  ||||||||||||||||  || | |||  |||||||||||||  ||| ||| ||||||||||||||||||| |||||    
T  35958415 gctgccaccttatccaatctatccctaatctctttgatttggtgcgccattttaaaacggaaagcaagtgaattagaggaagaaaacaagtggcgtacct 35958514  T
Q  155 tcattcgagtgctgccagaagctttcacaaattgnnnnnnncttgtcttgcaactcaaatc---------catcttcagcatcatagcagatgttttgta 245  Q
    |||  || ||||| |||||||||| ||||| |||       |||||||||||| |||||||         ||||||||||||||||||| || ||||| |    
T  35958515 tcacccgtgtgcttccagaagcttccacaacttg-ttttcgcttgtcttgcaagtcaaatccatccaatacatcttcagcatcatagcatatattttgaa 35958613  T
Q  246 cctgcctcaaccattcacgca 266  Q
     |||||||| |||||||||||    
T  35958614 tctgcctcagccattcacgca 35958634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 52 - 266
Target Start/End: Original strand, 35977867 - 35978089
Alignment:
Q  52 tcagctgccaccttattcaatctatttctaatctctttgattttatgtgacatcctaaaacggaaagctggtggatttgaggaagaaaacaagtggcata 151  Q
    |||||||||||||||| || |||||  |||||||||||||||| | ||| |||||||||||||||| |  ||||||| ||||||||||| ||||||| ||    
T  35977867 tcagctgccaccttatccattctatccctaatctctttgatttgacgtgccatcctaaaacggaaaacaagtggattagaggaagaaaagaagtggcgta 35977966  T
Q  152 ccttcattcgagtgctgccagaagctttcacaaattgnnnnnnncttgtcttgcaactcaaatc---------catcttcagcatcatagcagatgtttt 242  Q
    ||||||  ||  |||| | |||||||||||||| |||       |||||||||||| | |||||         ||||||||||||||||||| || ||||    
T  35977967 ccttcacccgtctgcttcgagaagctttcacaacttg-ctttcgcttgtcttgcaagttaaatccatccaatacatcttcagcatcatagcatatatttt 35978065  T
Q  243 gtacctgcctcaaccattcacgca 266  Q
    | | |||||||| |||||||||||    
T  35978066 gaatctgcctcagccattcacgca 35978089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 52 - 266
Target Start/End: Original strand, 35999279 - 35999501
Alignment:
Q  52 tcagctgccaccttattcaatctatttctaatctctttgattttatgtgacatcctaaaacggaaagctggtggatttgaggaagaaaacaagtggcata 151  Q
    |||||||||||||||| || |||||  |||||||||||||||| | ||| |||||||||||||||| |  ||||||| ||||||||||| ||||||| ||    
T  35999279 tcagctgccaccttatccattctatccctaatctctttgatttgacgtgccatcctaaaacggaaaacaagtggattagaggaagaaaagaagtggcgta 35999378  T
Q  152 ccttcattcgagtgctgccagaagctttcacaaattgnnnnnnncttgtcttgcaactcaaatc---------catcttcagcatcatagcagatgtttt 242  Q
    ||||||  ||  |||| | |||||||||||||| |||       |||||||||||| | |||||         ||||||||||||||||||| || ||||    
T  35999379 ccttcacccgtctgcttcgagaagctttcacaacttg-ctttcgcttgtcttgcaagttaaatccatccaatacatcttcagcatcatagcatatatttt 35999477  T
Q  243 gtacctgcctcaaccattcacgca 266  Q
    | | |||||||| |||||||||||    
T  35999478 gaatctgcctcagccattcacgca 35999501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 52 - 184
Target Start/End: Original strand, 35947207 - 35947339
Alignment:
Q  52 tcagctgccaccttattcaatctatttctaatctctttgattttatgtgacatcctaaaacggaaagctggtggatttgaggaagaaaacaagtggcata 151  Q
    |||||||||||||||| || |||||  |||||||||||||||| | ||| |||||||||||| ||| |  ||||||| ||||||||||| ||||||  ||    
T  35947207 tcagctgccaccttatccattctatccctaatctctttgatttgacgtgccatcctaaaacgaaaaacaagtggattagaggaagaaaagaagtggacta 35947306  T
Q  152 ccttcattcgagtgctgccagaagctttcacaa 184  Q
     |||||  || ||||| | ||||||||||||||    
T  35947307 acttcacccgtgtgcttcgagaagctttcacaa 35947339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 209 - 267
Target Start/End: Original strand, 35973898 - 35973956
Alignment:
Q  209 tcaaatccatcttcagcatcatagcagatgttttgtacctgcctcaaccattcacgcag 267  Q
    |||||| |||||||||||||  ||||||||||||| | |||||||| ||||||||||||    
T  35973898 tcaaatacatcttcagcatcggagcagatgttttgaatctgcctcagccattcacgcag 35973956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 209 - 267
Target Start/End: Original strand, 35995310 - 35995368
Alignment:
Q  209 tcaaatccatcttcagcatcatagcagatgttttgtacctgcctcaaccattcacgcag 267  Q
    |||||| |||||||||||||  ||||||||||||| | |||||||| ||||||||||||    
T  35995310 tcaaatacatcttcagcatcggagcagatgttttgaatctgcctcagccattcacgcag 35995368  T

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Target: chr7; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 216 - 266
Target Start/End: Original strand, 35926323 - 35926373
Alignment:
Q  216 catcttcagcatcatagcagatgttttgtacctgcctcaaccattcacgca 266  Q
    ||||||||||||||||||| || ||||| | |||||||| |||||||||||    
T  35926323 catcttcagcatcatagcatatattttgaatctgcctcagccattcacgca 35926373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 216 - 262
Target Start/End: Original strand, 18126298 - 18126344
Alignment:
Q  216 catcttcagcatcatagcagatgttttgtacctgcctcaaccattca 262  Q
    |||||||||||||||||||||| ||||||| |||||||  |||||||    
T  18126298 catcttcagcatcatagcagatattttgtatctgcctccgccattca 18126344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 31 - 160
Target Start/End: Original strand, 18126105 - 18126234
Alignment:
Q  31 gcaagtccaaaccttgtcccgtcagctgccaccttattcaatctatttctaatctctttgattttatgtgacatcctaaaacggaaagctggtggatttg 130  Q
    |||||||||||| | ||||| || | ||| ||||||| ||||||||  ||||| ||||| ||||  | || |||||||| ||| |||||  ||| ||| |    
T  18126105 gcaagtccaaacttagtcccatcggttgctaccttatccaatctatccctaatatctttaatttgttttgccatcctaagacgaaaagcaagtgaattgg 18126204  T
Q  131 aggaagaaaacaagtggcataccttcattc 160  Q
    ||||| | || ||||||| |||||||||||    
T  18126205 aggaacagaagaagtggcgtaccttcattc 18126234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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