View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17069_low_18 (Length: 239)

Name: NF17069_low_18
Description: NF17069
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17069_low_18
NF17069_low_18
[»] chr5 (6 HSPs)
chr5 (2-230)||(29021532-29021760)
chr5 (1-226)||(28673365-28673590)
chr5 (1-226)||(28695615-28695840)
chr5 (73-169)||(28662717-28662815)
chr5 (9-65)||(28662057-28662113)
chr5 (149-204)||(28532571-28532626)
[»] chr4 (4 HSPs)
chr4 (67-198)||(532587-532718)
chr4 (8-206)||(8186458-8186656)
chr4 (1-36)||(2373566-2373601)
chr4 (6-50)||(6007324-6007368)
[»] chr8 (4 HSPs)
chr8 (105-201)||(18314833-18314929)
chr8 (73-201)||(18318807-18318935)
chr8 (1-45)||(18314730-18314774)
chr8 (87-201)||(32151732-32151846)
[»] chr3 (1 HSPs)
chr3 (105-204)||(13469872-13469968)
[»] chr6 (1 HSPs)
chr6 (87-206)||(9411886-9412005)


Alignment Details
Target: chr5 (Bit Score: 205; Significance: 1e-112; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 2 - 230
Target Start/End: Complemental strand, 29021760 - 29021532
Alignment:
Q  2 attgctgattgcttccctttgctcgaagaacttgatcttagttatcctgtagagatcaactatcgcagtaacttactcgatggtttagaggctatttcat 101  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  29021760 attgctgattgcttccctttgctcgaagaactcgatcttagttatcctgtaaagatcaactatcgcagtaacttactcgatggtttagaggctatttcat 29021661  T
Q  102 tgtcactttttaaactccgcaaggttgttctctctcgtcattgctatatcaacgaccaatcacttttccacttgataaacaactgtaagcttctcgaaga 201  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  29021660 tgtcactttttaaactccgcaaggttgatctctctcgtcattgctatatcaacgaccaatcacttttccactttataaacaactgtaagcttctcgaaga 29021561  T
Q  202 agttactgtcatttcttgtcctagaataa 230  Q
    ||||| |||||||| ||||||||||||||    
T  29021560 agttattgtcattttttgtcctagaataa 29021532  T

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Target: chr5; HSP #2
Raw Score: 114; E-Value: 6e-58
Query Start/End: Original strand, 1 - 226
Target Start/End: Original strand, 28673365 - 28673590
Alignment:
Q  1 cattgctgattgcttccctttgctcgaagaacttgatcttagttatcctgtagagatcaactatcgcagtaacttactcgatggtttagaggctatttca 100  Q
    ||||||||||||||||||||||||||||||||| ||||||||| |||| | |||| ||| ||| | |||||  |||| ||||||| | ||||||||||||    
T  28673365 cattgctgattgcttccctttgctcgaagaactcgatcttagtgatcccggagagttcatctaccacagtagtttacacgatggtgttgaggctatttca 28673464  T
Q  101 ttgtcactttttaaactccgcaaggttgttctctctcgtcattgctatatcaacgaccaatcacttttccacttgataaacaactgtaagcttctcgaag 200  Q
    ||| ||||||| |||||| ||||||||  |||||||| ||||  ||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  28673465 ttgccacttttcaaactctgcaaggttaatctctctcatcatcactacatcaacgaccaatcacttttccatttgataaacaactgtaagcttctcgaag 28673564  T
Q  201 aagttactgtcatttcttgtcctaga 226  Q
    | ||||  ||| ||||||||| ||||    
T  28673565 aggttatagtcttttcttgtcataga 28673590  T

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Target: chr5; HSP #3
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 1 - 226
Target Start/End: Original strand, 28695615 - 28695840
Alignment:
Q  1 cattgctgattgcttccctttgctcgaagaacttgatcttagttatcctgtagagatcaactatcgcagtaacttactcgatggtttagaggctatttca 100  Q
    ||||||||||||||||||||||| ||||||||| ||| ||||| ||||   |||| ||| ||| | ||||| ||||| ||||||| ||||||||||||||    
T  28695615 cattgctgattgcttccctttgcccgaagaactcgatattagtgatcccagagagttcatctaccacagtagcttacacgatggtgtagaggctatttca 28695714  T
Q  101 ttgtcactttttaaactccgcaaggttgttctctctcgtcattgctatatcaacgaccaatcacttttccacttgataaacaactgtaagcttctcgaag 200  Q
    ||| ||||||| |||||| ||||||||  |||||||||||||  ||| ||||||| |||| ||||||||||||||||||||||||| |||||||||||||    
T  28695715 ttgccacttttcaaactctgcaaggttaatctctctcgtcatcactacatcaacggccaaccacttttccacttgataaacaactgcaagcttctcgaag 28695814  T
Q  201 aagttactgtcatttcttgtcctaga 226  Q
    | ||||  ||| ||||||||| ||||    
T  28695815 aggttatagtcttttcttgtcataga 28695840  T

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Target: chr5; HSP #4
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 73 - 169
Target Start/End: Original strand, 28662717 - 28662815
Alignment:
Q  73 cttactcgatggtttagaggctatttcattgtcactttttaaactccgcaaggtt--gttctctctcgtcattgctatatcaacgaccaatcacttttc 169  Q
    |||||||||||||||||| |||||||||||||||||||| |||||| | ||||||    |||||||||||||   || |||||||||||||||||||||    
T  28662717 cttactcgatggtttagatgctatttcattgtcacttttcaaactctggaaggttaatctctctctcgtcatcaatacatcaacgaccaatcacttttc 28662815  T

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Target: chr5; HSP #5
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 9 - 65
Target Start/End: Original strand, 28662057 - 28662113
Alignment:
Q  9 attgcttccctttgctcgaagaacttgatcttagttatcctgtagagatcaactatc 65  Q
    ||||||||||||||||||||||||| ||||||||| |||| | |||| |||||||||    
T  28662057 attgcttccctttgctcgaagaactcgatcttagtgatcccgaagagttcaactatc 28662113  T

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Target: chr5; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 149 - 204
Target Start/End: Complemental strand, 28532626 - 28532571
Alignment:
Q  149 atcaacgaccaatcacttttccacttgataaacaactgtaagcttctcgaagaagt 204  Q
    |||||| |||||||||||||||||||| | | |||||||||||||||| |||||||    
T  28532626 atcaacaaccaatcacttttccacttgttcagcaactgtaagcttctccaagaagt 28532571  T

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Target: chr4 (Bit Score: 44; Significance: 4e-16; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 67 - 198
Target Start/End: Complemental strand, 532718 - 532587
Alignment:
Q  67 cagtaacttactcgatggtttagaggctatttcattgtcactttttaaactccgcaaggttgttctctctcgtcattgctatatcaacgaccaatcactt 166  Q
    ||||| ||| ||| ||||| | ||| || ||||||| |||||||| |||||||||||||||  ||| |||  ||||  ||| |||||||||||||| |||    
T  532718 cagtagctttctccatggtgtggagactctttcattatcacttttcaaactccgcaaggttaatctttctactcatgactacatcaacgaccaatcgctt 532619  T
Q  167 ttccacttgataaacaactgtaagcttctcga 198  Q
    ||||||||| | || || ||||||||||||||    
T  532618 ttccacttgttcaaaaattgtaagcttctcga 532587  T

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Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 8 - 206
Target Start/End: Original strand, 8186458 - 8186656
Alignment:
Q  8 gattgcttccctttgctcgaagaacttgatcttagttatcctgtagagatcaactatcgcagtaacttactcgatggtttagaggctatttcattgtcac 107  Q
    ||||| || ||||| || |||||||| ||||| ||| | |||  |||| ||||| ||| ||||| |||  | |||||  | |||||| |||||||| |||    
T  8186458 gattgttttcctttcctagaagaactcgatctcagtaaccctaaagagttcaacaatctcagtatcttctttgatggagttgaggctctttcattggcac 8186557  T
Q  108 tttttaaactccgcaaggttgttctctctcgtcattgctatatcaacgaccaatcacttttccacttgataaacaactgtaagcttctcgaagaagtta 206  Q
    |||| ||||| |||||||||  ||| |||  ||||  ||||||||||||| |||  ||||| |||||| |||| || ||||||| ||||||||| ||||    
T  8186558 ttttcaaacttcgcaaggttaatctatctaatcataactatatcaacgacaaattgctttttcacttgttaaagaattgtaagcatctcgaagaggtta 8186656  T

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Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 36
Target Start/End: Original strand, 2373566 - 2373601
Alignment:
Q  1 cattgctgattgcttccctttgctcgaagaacttga 36  Q
    |||||||||||| |||||||||||||||||||||||    
T  2373566 cattgctgattgtttccctttgctcgaagaacttga 2373601  T

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Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 6 - 50
Target Start/End: Complemental strand, 6007368 - 6007324
Alignment:
Q  6 ctgattgcttccctttgctcgaagaacttgatcttagttatcctg 50  Q
    ||||||| || ||||| ||||||||||||||||||||||| ||||    
T  6007368 ctgattgttttcctttactcgaagaacttgatcttagttaccctg 6007324  T

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Target: chr8 (Bit Score: 37; Significance: 0.000000000005; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 105 - 201
Target Start/End: Original strand, 18314833 - 18314929
Alignment:
Q  105 cactttttaaactccgcaaggttgttctctctcgtcattgctatatcaacgaccaatcacttttccacttgataaacaactgtaagcttctcgaaga 201  Q
    ||||||| |||||||| ||||||  | || ||  ||||| ||| |||||||| ||||| |||||||||||| | || ||||||||||||||||||||    
T  18314833 cacttttcaaactccgaaaggttaatttcgctgatcattactacatcaacgatcaatcgcttttccacttgttcaagaactgtaagcttctcgaaga 18314929  T

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Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 73 - 201
Target Start/End: Original strand, 18318807 - 18318935
Alignment:
Q  73 cttactcgatggtttagaggctatttcattgtcactttttaaactccgcaaggttgttctctctcgtcattgctatatcaacgaccaatcacttttccac 172  Q
    ||||||||||||  |||||| | |||| ||  ||||||  |||||||| ||||||| |||| || |||||  |||||||| ||| ||||| ||| |||||    
T  18318807 cttactcgatggagtagaggttctttctttagcactttccaaactccgaaaggttgatctcactggtcatcactatatcaccgatcaatcgcttatccac 18318906  T
Q  173 ttgataaacaactgtaagcttctcgaaga 201  Q
    ||| | || ||||| ||||||||||||||    
T  18318907 ttgttcaagaactggaagcttctcgaaga 18318935  T

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Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 18314730 - 18314774
Alignment:
Q  1 cattgctgattgcttccctttgctcgaagaacttgatcttagtta 45  Q
    |||||||||||| |||||||||||||||||||| || ||||||||    
T  18314730 cattgctgattgtttccctttgctcgaagaactcgaccttagtta 18314774  T

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Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 87 - 201
Target Start/End: Complemental strand, 32151846 - 32151732
Alignment:
Q  87 tagaggctatttcattgtcactttttaaactccgcaaggttgttctctctcgtcattgctatatcaacgaccaatcacttttccacttgataaacaactg 186  Q
    |||||||| |||||  | |||||| ||||||| | ||||||  |||| |  |||||  |||||| || || ||||| |||||||||||| | ||||||||    
T  32151846 tagaggctctttcaacggcactttataaactctggaaggttaatctcacaagtcatcactatattaaagatcaatcgcttttccacttgttcaacaactg 32151747  T
Q  187 taagcttctcgaaga 201  Q
     ||||||||||||||    
T  32151746 gaagcttctcgaaga 32151732  T

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Target: chr3 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 105 - 204
Target Start/End: Original strand, 13469872 - 13469968
Alignment:
Q  105 cactttttaaactccgcaaggttgttctctctcgtcattgctatatcaacgaccaatcacttttccacttgataaacaactgtaagcttctcgaagaagt 204  Q
    |||||||||||||||||||||||  ||| ||| ||  || |||||  ||| ||| |||||||||||||||  |  |||||||||||||||||||||||||    
T  13469872 cactttttaaactccgcaaggttaatctttctagtt-ttcctata--aacaacctatcacttttccacttattccacaactgtaagcttctcgaagaagt 13469968  T

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Target: chr6 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 87 - 206
Target Start/End: Complemental strand, 9412005 - 9411886
Alignment:
Q  87 tagaggctatttcattgtcactttttaaactccgcaaggttgttctctctcgtcattgctatatcaacgaccaatcacttttccacttgataaacaactg 186  Q
    ||||| || |||||||| ||||||| ||||||  |||| ||  ||||||| |||||  ||| |||||||||  |||||| ||| ||||| | || |||||    
T  9412005 tagagactctttcattgacacttttcaaactcaccaagattaatctctctggtcatcactacatcaacgacacatcactcttcaacttgtttaagaactg 9411906  T
Q  187 taagcttctcgaagaagtta 206  Q
    |||||||||| |||| ||||    
T  9411905 taagcttctccaagaggtta 9411886  T

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