View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17069_low_2 (Length: 553)
Name: NF17069_low_2
Description: NF17069
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17069_low_2 |
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Alignment Details
Target: chr1 (Bit Score: 488; Significance: 0; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 488; E-Value: 0
Query Start/End: Original strand, 1 - 537
Target Start/End: Original strand, 36990750 - 36991298
Alignment:
| Q |
1 |
catcaacttcatctccttctcttcaactcagttcaaataattcactcaataatatcttagaagaaaatggatcactccatttatctgctgcaacttcacc |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36990750 |
catcaacttcatctccttctcttcaactcagttcaaataattcactcaataatatcttagaagaaaatggatcactccatttatctgctgcaacttcacc |
36990849 |
T |
|
| Q |
101 |
tcacatgtcagccactgcattgctacaaaaagctgctcaaatgggtgcaactgtgagtaataataatgcaggtatcatgacggataaaactaccgttgct |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
36990850 |
tcacatgtcagccactgcattgctacaaaaagctgctcaaatgggtgcaactgtgagtaataataatgcaggtatcatgactgataaaactaccgttgct |
36990949 |
T |
|
| Q |
201 |
acaaacatgatggcgccgccgcagtttggtgtggtgcaacaacaaggacatgctttcatgaaccactacatgcaacagcaacaacaacactacaataata |
300 |
Q |
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|| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
36990950 |
acgaacatgatggcgccgccgcagtttggtttggtgcaacaacaaggacatgctttcatgaaccactacatgcaacagcaacaacaacattacaataata |
36991049 |
T |
|
| Q |
301 |
atttcaatgcaaatgggataataaatggaggaggtgttggaatgaatggagttgatatgtttaatgctatattggatcaaagtaaggctttatcgaagat |
400 |
Q |
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||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36991050 |
atttcaatgcaaatgggataataaatggaggtggtgttggaatgaatggagttgatatgtttaatgctatattggatcaaagtaaggctttatcgaagat |
36991149 |
T |
|
| Q |
401 |
cattgaacaaaacaatcaaactcaaagcattaatagtgttgtt------------ggaggtgcatcaagtaatagtaataatgttatgaacattagtgga |
488 |
Q |
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| T |
36991150 |
cattgaacaaaacaatcaaactcaaagcattaatagtgttgttggaggtggaggaggaggtgcatcaagtaatagtaataatgttatgaacattagtgga |
36991249 |
T |
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| Q |
489 |
agtaagggtggtggagatgtaatgacactggatttgttggggataggag |
537 |
Q |
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| T |
36991250 |
agtaagggtggtggagatgtaatgacactggatttgttggggataggag |
36991298 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 99 - 152
Target Start/End: Original strand, 12777563 - 12777616
Alignment:
| Q |
99 |
cctcacatgtcagccactgcattgctacaaaaagctgctcaaatgggtgcaact |
152 |
Q |
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| T |
12777563 |
cctcacatgtcagcaactgctttgcttcaaaaagcttctcaaatgggtgcaact |
12777616 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 102 - 151
Target Start/End: Complemental strand, 12801419 - 12801370
Alignment:
| Q |
102 |
cacatgtcagccactgcattgctacaaaaagctgctcaaatgggtgcaac |
151 |
Q |
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| T |
12801419 |
cacatgtcggcaactgcattgcttcaaaaagctgctcaaattggttcaac |
12801370 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 99 - 152
Target Start/End: Original strand, 42289291 - 42289344
Alignment:
| Q |
99 |
cctcacatgtcagccactgcattgctacaaaaagctgctcaaatgggtgcaact |
152 |
Q |
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||||||||||| |||||||||||||| ||||||||| |||| || ||| ||||| |
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| T |
42289291 |
cctcacatgtctgccactgcattgcttcaaaaagcttctcagattggttcaact |
42289344 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 46; Significance: 6e-17; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 335 - 416
Target Start/End: Original strand, 46621319 - 46621400
Alignment:
| Q |
335 |
tgttggaatgaatggagttgatatgtttaatgctatattggatcaaagtaaggctttatcgaagatcattgaacaaaacaat |
416 |
Q |
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|||| |||||| |||| || ||||||| ||| |||||||||||||||||||||| ||||| ||||||||||| ||||||||| |
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| T |
46621319 |
tgttagaatgagtggatttaatatgttcaattctatattggatcaaagtaaggccttatcaaagatcattgagcaaaacaat |
46621400 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 36; Significance: 0.00000000005; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 88 - 151
Target Start/End: Original strand, 42899249 - 42899312
Alignment:
| Q |
88 |
ctgcaacttcacctcacatgtcagccactgcattgctacaaaaagctgctcaaatgggtgcaac |
151 |
Q |
| |
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||||| ||||||||||||||||||| || |||||| |||| ||||| ||||| ||||||||||| |
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| T |
42899249 |
ctgcagcttcacctcacatgtcagctacagcattgttacagaaagcagctcagatgggtgcaac |
42899312 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 102 - 151
Target Start/End: Complemental strand, 5787666 - 5787617
Alignment:
| Q |
102 |
cacatgtcagccactgcattgctacaaaaagctgctcaaatgggtgcaac |
151 |
Q |
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||||||||||| ||||||||| | || ||||| ||||||||||||||||| |
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| T |
5787666 |
cacatgtcagctactgcattgttgcagaaagcagctcaaatgggtgcaac |
5787617 |
T |
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