View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17069_low_20 (Length: 237)
Name: NF17069_low_20
Description: NF17069
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17069_low_20 |
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Alignment Details
Target: chr1 (Bit Score: 217; Significance: 1e-119; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 1 - 221
Target Start/End: Complemental strand, 14673090 - 14672870
Alignment:
| Q |
1 |
gcaatgccagaagttcctaagtatacacattttgttctaattcttttactatacactatatgtcaggaatcacttgcctcgttcaatcccatcgataatt |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
14673090 |
gcaatgccagaagttcctaagtatacacattttgttctaattcttttactatacactatatgtcaggaatcacttgcctcgttcaatcccattgataatt |
14672991 |
T |
|
| Q |
101 |
atttggtcgcttgtggttcatcccataatatcacatttcatggtcgaactttcacacctgatattgaattcgaacattcaaatcttcaaataatagccaa |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14672990 |
atttggtcgcttgtggttcatcccataatatcacatttcatggtcgaactttcacacctgatattgaattcgaacattcaaatcttcaaataatagccaa |
14672891 |
T |
|
| Q |
201 |
caaatctttgtctgttacctc |
221 |
Q |
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||||||||||||||||||||| |
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| T |
14672890 |
caaatctttgtctgttacctc |
14672870 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 1 - 221
Target Start/End: Complemental strand, 14678468 - 14678248
Alignment:
| Q |
1 |
gcaatgccagaagttcctaagtatacacattttgttctaattcttttactatacactatatgtcaggaatcacttgcctcgttcaatcccatcgataatt |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
14678468 |
gcaatgccagaagttcctaagtatacacattttgttctaattcttttactatacactatatgtcaggaatcacttgcctcgttcaatcccattgataatt |
14678369 |
T |
|
| Q |
101 |
atttggtcgcttgtggttcatcccataatatcacatttcatggtcgaactttcacacctgatattgaattcgaacattcaaatcttcaaataatagccaa |
200 |
Q |
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| T |
14678368 |
atttggtcgcttgtggttcatcccataatatcacatttcatggtcgaactttcacacctgatattgaattcgaacattcaaatcttcaaataatagccaa |
14678269 |
T |
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| Q |
201 |
caaatctttgtctgttacctc |
221 |
Q |
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||||||||||||||||||||| |
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| T |
14678268 |
caaatctttgtctgttacctc |
14678248 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 1 - 198
Target Start/End: Original strand, 14665897 - 14666095
Alignment:
| Q |
1 |
gcaatgccagaagttcctaagtatacacattttgttctaattctttt-actatacactatatgtcaggaatcacttgcctcgttcaatcccatcgataat |
99 |
Q |
| |
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||||||| |||| |||||||||||||| ||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14665897 |
gcaatgcatgaagctcctaagtatacaccttttgttctaattttttttactatacactatatgtcaggaatcacttgcctcgttcaatcccatcgataat |
14665996 |
T |
|
| Q |
100 |
tatttggtcgcttgtggttcatcccataatatcacatttcatggtcgaactttcacacctgatattgaattcgaacattcaaatcttcaaataatagcc |
198 |
Q |
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| T |
14665997 |
tatttggtcgcttgtggttcatctcataacataaaatttgagggtcgaactttcatacctgacattgaattagaacattccaaccttcaaataatagcc |
14666095 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 124; E-Value: 6e-64
Query Start/End: Original strand, 11 - 198
Target Start/End: Complemental strand, 14687759 - 14687572
Alignment:
| Q |
11 |
aagttcctaagtatacacattttgttctaattcttttactatacactatatgtcaggaatcacttgcctcgttcaatcccatcgataattatttggtcgc |
110 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||| | ||| ||||||||| ||||||| ||||||||||||||||||||||||||| | |
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| T |
14687759 |
aagttcctaagtatacaccttttgttctaattcttttactatactccgcatgccaggaatcatttgcctcattcaatcccatcgataattatttggtcac |
14687660 |
T |
|
| Q |
111 |
ttgtggttcatcccataatatcacatttcatggtcgaactttcacacctgatattgaattcgaacattcaaatcttcaaataatagcc |
198 |
Q |
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|||||||||||| |||||||||||||||| ||||||||||||| |||||| ||||||||||||||||| || ||||||||||||||| |
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| T |
14687659 |
ttgtggttcatcttataatatcacatttcagggtcgaactttcatacctgacattgaattcgaacattccaaccttcaaataatagcc |
14687572 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 127; Significance: 1e-65; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 1 - 198
Target Start/End: Complemental strand, 30735263 - 30735065
Alignment:
| Q |
1 |
gcaatgccagaagttcctaagtatacacattttgttctaattctttt-actatacactatatgtcaggaatcacttgcctcgttcaatcccatcgataat |
99 |
Q |
| |
|
||||||| |||| |||||||||||||| ||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30735263 |
gcaatgcatgaagctcctaagtatacaccttttgttctaattttttttactatacactatatgtcaggaatcacttgcctcgttcaatcccatcgataat |
30735164 |
T |
|
| Q |
100 |
tatttggtcgcttgtggttcatcccataatatcacatttcatggtcgaactttcacacctgatattgaattcgaacattcaaatcttcaaataatagcc |
198 |
Q |
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||||||||||||||||||||||| ||||| || | |||| | ||||||||||||| |||||| |||||||| |||||||| || ||||||||||||||| |
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| T |
30735163 |
tatttggtcgcttgtggttcatctcataacataaaatttgagggtcgaactttcatacctgacattgaattagaacattccaaccttcaaataatagcc |
30735065 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 68; Significance: 2e-30; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 31 - 210
Target Start/End: Original strand, 24057064 - 24057243
Alignment:
| Q |
31 |
tttgttctaattcttttactatacactatatgtcaggaatcacttgcctcgttcaatcccatcgataattatttggtcgcttgtggttcatcccataata |
130 |
Q |
| |
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|||||||| |||||||||||| || | ||||| ||||||| | ||||||||| ||||||| |||||||||||||||||||||||||| ||||| ||| |
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| T |
24057064 |
tttgttcttattcttttactaaacgtcacatgtcgggaatcattcgcctcgttccatcccattgataattatttggtcgcttgtggttcttcccacaatg |
24057163 |
T |
|
| Q |
131 |
tcacatttcatggtcgaactttcacacctgatattgaattcgaacattcaaatcttcaaataatagccaacaaatctttg |
210 |
Q |
| |
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|||| ||||| |||||||||||| |||||| | |||||| |||||||| || ||||||||| ||| | ||||||||| |
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| T |
24057164 |
tcacgtttcagggtcgaactttcgtacctgacactgaatttgaacattccaactttcaaataaaagcagaaaaatctttg |
24057243 |
T |
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