View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17069_low_3 (Length: 491)
Name: NF17069_low_3
Description: NF17069
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17069_low_3 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 374; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 374; E-Value: 0
Query Start/End: Original strand, 19 - 491
Target Start/End: Original strand, 6364941 - 6365425
Alignment:
| Q |
19 |
ccaatgttggcaaggaggtaataacacttttcagatacgttttctctccgactttgcctttaccggtttttcctatacaaaaattggactctcaatttca |
118 |
Q |
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| T |
6364941 |
ccaatgttggcaaggaggtaataacacttgccagatacgttttctctcccactttgccttttccggtttttcctatacaaaaattggactctcaatttca |
6365040 |
T |
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| Q |
119 |
ctgatgatgattttaaatagtagtaacacgttatagctattccaaaatttgatgttttttacagctcaaatgttctttatacctactacat--------- |
209 |
Q |
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| T |
6365041 |
ctgatgatgattttaaatagtagtaacacgttatagctattccaaaatttgatgttttttacagctcaaatgttctttatacctactacataatttctca |
6365140 |
T |
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| Q |
210 |
----ccacttgcccttaattatatcaaattgaaaactaaattttaatattttagtggtaattgatagtaactggttatttatgaataatatttgggtatt |
305 |
Q |
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| T |
6365141 |
acatccacttgcccttaattatatcaaattgaaa-ctaaattttaatattttagtggtaattgatagtaactggttatttatgaataatatttgggtatt |
6365239 |
T |
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| Q |
306 |
gttaaaataagataaagaagttgttaccatcagcaacggtagcactaatcagccagagagccacagaacggcggaacaaggcggtggcagtgtcaagtac |
405 |
Q |
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| T |
6365240 |
gttaaaataagataaagaagttgttaccatcagcaacggtagcactaatcagccagagagccacagaacggcggaacaaggaggtggcagtgtcagctac |
6365339 |
T |
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| Q |
406 |
agtaccggcaacatcaccagcaaaatcgaagataccgccaaatgcaccaccggcgctttgagctgcagtcagttcgttgatgtcta |
491 |
Q |
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| T |
6365340 |
agtaccggcagcatcaccaacaaaatcgaagaaactgtcaactacaccaccggcgctttgagctgcagtgagttcgttgatgtcta |
6365425 |
T |
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