View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17069_low_5 (Length: 414)
Name: NF17069_low_5
Description: NF17069
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17069_low_5 |
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Alignment Details
Target: chr4 (Bit Score: 363; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 363; E-Value: 0
Query Start/End: Original strand, 1 - 394
Target Start/End: Original strand, 22042311 - 22042704
Alignment:
| Q |
1 |
atagtggagaatcttatatgggaatactgtcgcgatatttactttggacacaggaaagtggtttatggatcttaaaggaaaagaagatgagttgcttaca |
100 |
Q |
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| T |
22042311 |
atagtggagaatcttatatgggaatactatcgcgatatttactttggacacaggaaagtggtt-atggatcttaaaggaaaagaagatgagttgcttaca |
22042409 |
T |
|
| Q |
101 |
aattttgaataaaccgcggaatctgcttttctcatggttgtagtatttgcactatctgtaacaaagcacaaattgagttccacatttgctcaagaaatac |
200 |
Q |
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| T |
22042410 |
aattttgaaaaaaccgcggaatctgcttttctcatggttgtagtatttgcactatctgtaacaaagcacaaattgagttccacatttgctcaagaaatac |
22042509 |
T |
|
| Q |
201 |
aaaccgaaatctcattgaagatactagtatcattatcttgtgtggaatattttcgccatgtgcgcttgccagagtatatggaaaccattcgcaaggtaat |
300 |
Q |
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| T |
22042510 |
aaaccgaaatctcattgaagatactagtatcattatcttgtgtggaatattttcgccatgtgcgcttgccagagtatatggaaaccattcgcaaggtaac |
22042609 |
T |
|
| Q |
301 |
tgcaattgtt-agaagaatgagaattcttgtacattttttgtgaactccataccgtcttatggtgacttgacaaatgggccaggtatgatttatt |
394 |
Q |
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| T |
22042610 |
tgcaattgttaagaagaatgagaatgcttgtacattttttgtgaactccataccgtcttatggtgacttgacaaatgggccaggtatgatttatt |
22042704 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 307; Significance: 1e-173; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 307; E-Value: 1e-173
Query Start/End: Original strand, 1 - 394
Target Start/End: Complemental strand, 2425105 - 2424712
Alignment:
| Q |
1 |
atagtggagaatcttatatgggaatactgtcgcgatatttactttggacacaggaaagtggtttatggatcttaaaggaaaagaagatgagttgcttaca |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | | | ||||||||||||||||||||| ||||||||| |
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| T |
2425105 |
atagtggagaatcttatatgggaatactgtcgcgatatttactttggacacaggaaagtggct-acgcatcttaaaggaaaagaagatgtgttgcttacg |
2425007 |
T |
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| Q |
101 |
aattttgaataaaccgcggaatctgcttttctcatggttgtagtatttgcactatctgtaacaaagcacaaattgagttccacatttgctcaagaaatac |
200 |
Q |
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|||| ||| ||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
2425006 |
gatttcgaaaaaatcgcggaatctgcttttctcatggttgtagtatttgcactagctgtaacaaagcacaaattgagttccaaatttgctcaagaaatac |
2424907 |
T |
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| Q |
201 |
aaaccgaaatctcattgaagatactagtatcattatcttgtgtggaatattttcgccatgtgcgcttgccagagtatatggaaaccattcgcaaggtaat |
300 |
Q |
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|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
2424906 |
aaaccgaagtctcattgaagatactagtatcattatcttgtgtggaatattttcgccatgttcgcttgccagagtatatggaaaccattcgcaaggtaat |
2424807 |
T |
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| Q |
301 |
tgcaattgtt-agaagaatgagaattcttgtacattttttgtgaactccataccgtcttatggtgacttgacaaatgggccaggtatgatttatt |
394 |
Q |
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||||| |||| | |||||||||||| ||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
2424806 |
tgcaagtgttaacaagaatgagaatgcttgtaccttttttgtgaactccataccgtcttatggcgacttgacaaatgggccaggtatgatttatt |
2424712 |
T |
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