View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17069_low_6 (Length: 397)
Name: NF17069_low_6
Description: NF17069
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17069_low_6 |
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Alignment Details
Target: chr4 (Bit Score: 330; Significance: 0; HSPs: 8)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 330; E-Value: 0
Query Start/End: Original strand, 19 - 384
Target Start/End: Complemental strand, 45318534 - 45318169
Alignment:
| Q |
19 |
gcctcaattttctcaggctctacctggttaacagtaattttctccaactccacctggttaactgtaggatttgctttcttctcatcattttcagcctcaa |
118 |
Q |
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| T |
45318534 |
gcctcaattttctcaggctctacctggttaacagtaattttctccgactccacctggttaactgtaggatttgctttcttctcatcattttcagcctcaa |
45318435 |
T |
|
| Q |
119 |
ttttctcaggctccatctctgcctggttaacgataattttttcatactccacctggtttatagtaggannnnnnnncttatcatcatcttcagcctcaat |
218 |
Q |
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| T |
45318434 |
ttttctcaggctccgtctctgcctggttaacgataattttttcatactccacctggtttatagtaggattttttttcttatcatcatcttcagcctcaat |
45318335 |
T |
|
| Q |
219 |
tttctcagactccacctggtaaacaataacttcctctgccatcaatgatcaaggatgaagcaaaaatttcaaagactcctgcaacagataagaatccttt |
318 |
Q |
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||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45318334 |
tttctcagactccacctggtaaacaataatttcctctgccatcaatgatcaaggatgaagcaaaaatttcaaagactcctgcaacagataagaatccttt |
45318235 |
T |
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| Q |
319 |
cagatatgtacagcaaggtggaggggagaacaagaatgctaattaaaacagcatgaaaagtctaca |
384 |
Q |
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| T |
45318234 |
cagatatgtacagcaaggtggaggggagaacaagaatgctaattaaaacagcatgaaaagtctaca |
45318169 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 19 - 98
Target Start/End: Complemental strand, 45318648 - 45318569
Alignment:
| Q |
19 |
gcctcaattttctcaggctctacctggttaacagtaattttctccaactccacctggttaactgtaggatttgctttctt |
98 |
Q |
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| T |
45318648 |
gcctcaattttctcaggctctatctggttaccagtaattttttcagactccaccaggttaactgtaggatttgctttctt |
45318569 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 19 - 136
Target Start/End: Complemental strand, 45318744 - 45318624
Alignment:
| Q |
19 |
gcctcaattttctcaggctctacctggttaacagtaattttctccaactccacctggttaactgtaggatttgctttcttctcatca---ttttcagcct |
115 |
Q |
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|||||||||||||||| ||||||||||| |||| |||||||||| ||||||||||||||| ||||| |||||||||| |||||| | ||| |||| |
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| T |
45318744 |
gcctcaattttctcagtctctacctggtgaacaataattttctcagactccacctggttaagagtaggcgttgctttcttatcatcatcttcttcggcct |
45318645 |
T |
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| Q |
116 |
caattttctcaggctccatct |
136 |
Q |
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| T |
45318644 |
caattttctcaggctctatct |
45318624 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 83 - 133
Target Start/End: Complemental strand, 45318839 - 45318789
Alignment:
| Q |
83 |
taggatttgctttcttctcatcattttcagcctcaattttctcaggctcca |
133 |
Q |
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| T |
45318839 |
taggatttgctttcttatcatcatattcagcctcaattttctcaggctcca |
45318789 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 66 - 185
Target Start/End: Complemental strand, 45318793 - 45318677
Alignment:
| Q |
66 |
ctccacctggttaactgtaggatttgctttctt---ctcatcattttcagcctcaattttctcaggctccatctctgcctggttaacgataattttttca |
162 |
Q |
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||||||||||||| | |||||||||| |||||| ||||||| |||||||||||||||||||| ||||| |||||| ||| |||||||| ||| |
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| T |
45318793 |
ctccacctggttatcagtaggatttgttttcttatcatcatcatcttcagcctcaattttctcag------tctctacctggtgaacaataattttctca |
45318700 |
T |
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| Q |
163 |
tactccacctggtttatagtagg |
185 |
Q |
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||||||||||||| | |||||| |
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| T |
45318699 |
gactccacctggttaagagtagg |
45318677 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 198 - 247
Target Start/End: Complemental strand, 45318757 - 45318708
Alignment:
| Q |
198 |
atcatcatcttcagcctcaattttctcagactccacctggtaaacaataa |
247 |
Q |
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||||||||||||||||||||||||||||| ||| ||||||| |||||||| |
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| T |
45318757 |
atcatcatcttcagcctcaattttctcagtctctacctggtgaacaataa |
45318708 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 195 - 238
Target Start/End: Complemental strand, 45318826 - 45318783
Alignment:
| Q |
195 |
cttatcatcatcttcagcctcaattttctcagactccacctggt |
238 |
Q |
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| T |
45318826 |
cttatcatcatattcagcctcaattttctcaggctccacctggt |
45318783 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 198 - 243
Target Start/End: Complemental strand, 45318547 - 45318502
Alignment:
| Q |
198 |
atcatcatcttcagcctcaattttctcagactccacctggtaaaca |
243 |
Q |
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||||||||||||||||||||||||||||| ||| ||||||| |||| |
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| T |
45318547 |
atcatcatcttcagcctcaattttctcaggctctacctggttaaca |
45318502 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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