View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17069_low_9 (Length: 350)
Name: NF17069_low_9
Description: NF17069
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17069_low_9 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 293; Significance: 1e-164; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 293; E-Value: 1e-164
Query Start/End: Original strand, 1 - 350
Target Start/End: Complemental strand, 45318342 - 45317990
Alignment:
| Q |
1 |
gcctcaattttctcagactccacctggtaaacaataacttcctctgccatcaatgatcaaggatgaagcaaaaatttcaaagactcctgcaacagataag |
100 |
Q |
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| T |
45318342 |
gcctcaattttctcagactccacctggtaaacaataatttcctctgccatcaatgatcaaggatgaagcaaaaatttcaaagactcctgcaacagataag |
45318243 |
T |
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| Q |
101 |
aatcctttcagatatgtacagcaaggtggaggggagaacaagaatgctaattaaaacagcatgaaaagtctacagca---nnnnnnnnnnggaatctagt |
197 |
Q |
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| T |
45318242 |
aatcctttcagatatgtacagcaaggtggaggggagaacaagaatgctaattaaaacagcatgaaaagtctacaacatatttttttttttggaatctagt |
45318143 |
T |
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| Q |
198 |
tcattagaaaggtgcaaagattctaatttcaacacatgcgttagatatatgtatgggtagggattagagagggagggtaaatctaggattatcttgacac |
297 |
Q |
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|||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45318142 |
tcattataaaggtgcaaagattctaatttcaacacatgagttagatatatgtatgggtagggattagagagggagggtaaatctaggattatcttgacac |
45318043 |
T |
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| Q |
298 |
attggtagtaacactacttgtgcagtgacatgaatgtgctggaattttggttt |
350 |
Q |
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| T |
45318042 |
attggtagtaacactacttgtgcagtgacatgaatgtgctggaattttggttt |
45317990 |
T |
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