View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1706_high_13 (Length: 480)

Name: NF1706_high_13
Description: NF1706
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1706_high_13
NF1706_high_13
[»] chr4 (14 HSPs)
chr4 (16-254)||(53679305-53679543)
chr4 (16-254)||(38948069-38948307)
chr4 (16-254)||(43469997-43470235)
chr4 (33-254)||(19836862-19837083)
chr4 (16-250)||(19309783-19310017)
chr4 (16-214)||(8932962-8933160)
chr4 (40-173)||(10009462-10009595)
chr4 (39-92)||(7446494-7446547)
chr4 (45-103)||(14528487-14528545)
chr4 (58-168)||(25459302-25459412)
chr4 (39-101)||(38654842-38654904)
chr4 (51-92)||(5592220-5592261)
chr4 (275-316)||(38346741-38346782)
chr4 (51-92)||(48126109-48126150)
[»] chr8 (6 HSPs)
chr8 (16-254)||(13403792-13404030)
chr8 (16-250)||(24732850-24733084)
chr8 (28-250)||(41691956-41692178)
chr8 (113-225)||(43599586-43599698)
chr8 (16-117)||(43599199-43599300)
chr8 (32-193)||(38891618-38891779)
[»] chr3 (9 HSPs)
chr3 (16-300)||(50542803-50543085)
chr3 (16-254)||(19232796-19233034)
chr3 (16-254)||(16896767-16897005)
chr3 (16-254)||(30936851-30937089)
chr3 (16-226)||(31644640-31644850)
chr3 (33-254)||(40969941-40970162)
chr3 (22-254)||(11583778-11584010)
chr3 (32-173)||(19653030-19653171)
chr3 (45-101)||(33980756-33980812)
[»] chr2 (6 HSPs)
chr2 (16-254)||(3153430-3153668)
chr2 (16-254)||(44939940-44940178)
chr2 (16-254)||(79485-79723)
chr2 (19-61)||(10060055-10060097)
chr2 (49-251)||(14164136-14164338)
chr2 (122-251)||(2177096-2177225)
[»] chr7 (7 HSPs)
chr7 (16-254)||(34206040-34206278)
chr7 (19-254)||(43109096-43109331)
chr7 (19-254)||(4163752-4163987)
chr7 (276-470)||(48495545-48495735)
chr7 (46-254)||(45459172-45459380)
chr7 (16-179)||(39295640-39295803)
chr7 (51-101)||(8606780-8606830)
[»] chr6 (9 HSPs)
chr6 (16-254)||(16467129-16467367)
chr6 (16-254)||(26710943-26711181)
chr6 (16-254)||(1308859-1309097)
chr6 (16-254)||(33146661-33146898)
chr6 (22-254)||(5874801-5875033)
chr6 (16-115)||(3490171-3490270)
chr6 (16-161)||(31933960-31934105)
chr6 (186-250)||(3490054-3490118)
chr6 (39-101)||(17713940-17714002)
[»] chr1 (5 HSPs)
chr1 (19-254)||(10386105-10386340)
chr1 (16-147)||(51169791-51169922)
chr1 (39-171)||(36193073-36193205)
chr1 (39-173)||(35368204-35368338)
chr1 (276-315)||(51781617-51781656)
[»] chr5 (7 HSPs)
chr5 (33-254)||(841710-841931)
chr5 (143-250)||(2681578-2681685)
chr5 (40-142)||(26501565-26501667)
chr5 (46-110)||(2681465-2681529)
chr5 (39-173)||(10468959-10469093)
chr5 (18-50)||(3417679-3417711)
chr5 (39-103)||(28639099-28639163)


Alignment Details
Target: chr4 (Bit Score: 195; Significance: 1e-106; HSPs: 14)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 16 - 254
Target Start/End: Complemental strand, 53679543 - 53679305
Alignment:
Q  16 gttttagctgtgttgacaaacaatcttttatttctttcattccaaagaactcaaataccacagagccaaatcaaatgaagaaaagaccttcttggagcat 115  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||    
T  53679543 gttttagttgtgttgacaaacaatcttttatttctttcattccaaagaacccaaataccacaaagccaaatcaaatgaagaaaagaccttcttggagcat 53679444  T
Q  116 aatcatctgaagaataaacaaactgataataatggtccaaaacctgatgaggatccacataaaacacgtcaatccaagttttaatttgttgccaaagatc 215  Q
    || || |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  53679443 aaccacctgaagaataaacaaactgataataatggtccaaaatctgatgaggatccacataaaacacgccaatccaagttttaatttgttgccaaagatc 53679344  T
Q  216 actaaaaatagaacaacgaataattaagtgatctattgt 254  Q
    || |||||||| |||| ||||||||||||| ||||||||    
T  53679343 accaaaaataggacaatgaataattaagtggtctattgt 53679305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 179; E-Value: 2e-96
Query Start/End: Original strand, 16 - 254
Target Start/End: Complemental strand, 38948307 - 38948069
Alignment:
Q  16 gttttagctgtgttgacaaacaatcttttatttctttcattccaaagaactcaaataccacagagccaaatcaaatgaagaaaagaccttcttggagcat 115  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||| |||||||||||||||    
T  38948307 gttttagctgtgttgacaaacaatctattatttctttcattccaaagaacccaaataccacaaagccaaatcaaatgaagaaaaaaccttcttggagcat 38948208  T
Q  116 aatcatctgaagaataaacaaactgataataatggtccaaaacctgatgaggatccacataaaacacgtcaatccaagttttaatttgttgccaaagatc 215  Q
    || || |||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||  ||||||||||||||||||||||||| |||||    
T  38948207 aaccacctgaagaataaacaaactaataataatggtccaaaacctgatgaggatccacagaaaacacaccaatccaagttttaatttgttgccagagatc 38948108  T
Q  216 actaaaaatagaacaacgaataattaagtgatctattgt 254  Q
    || |||||||| |||| ||||||||||||| ||||||||    
T  38948107 accaaaaataggacaatgaataattaagtggtctattgt 38948069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 115; E-Value: 3e-58
Query Start/End: Original strand, 16 - 254
Target Start/End: Complemental strand, 43470235 - 43469997
Alignment:
Q  16 gttttagctgtgttgacaaacaatcttttatttctttcattccaaagaactcaaataccacagagccaaatcaaatgaagaaaagaccttcttggagcat 115  Q
    ||||| ||||| |||||||| ||||||| ||||||||| ||||||||||| ||||||||||| ||||||| ||||||||| |||||| ||||||||||||    
T  43470235 gtttttgctgtattgacaaataatctttgatttctttcgttccaaagaacccaaataccacaaagccaaaccaaatgaaggaaagactttcttggagcat 43470136  T
Q  116 aatcatctgaagaataaacaaactgataataatggtccaaaacctgatgaggatccacataaaacacgtcaatccaagttttaatttgttgccaaagatc 215  Q
        | |||||||  ||||||| ||||||||||| ||||| |||||||||||||||||  |||||||  |||| ||||||||||||||||||||||||||    
T  43470135 ggctagctgaagagaaaacaaattgataataatgatccaacacctgatgaggatccacggaaaacacaccaattcaagttttaatttgttgccaaagatc 43470036  T
Q  216 actaaaaatagaacaacgaataattaagtgatctattgt 254  Q
    || |||||||| | || ||||||||| ||| ||||||||    
T  43470035 accaaaaataggataatgaataattatgtggtctattgt 43469997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 106; E-Value: 7e-53
Query Start/End: Original strand, 33 - 254
Target Start/End: Original strand, 19836862 - 19837083
Alignment:
Q  33 aaacaatcttttatttctttcattccaaagaactcaaataccacagagccaaatcaaatgaagaaaagaccttcttggagcataatcatctgaagaataa 132  Q
    ||||| |||||  |||||||||||| ||||||| ||||||||||| ||||||||||| |||||||||||||||||||||  ||||  | |||||||||||    
T  19836862 aaacagtctttggtttctttcattcgaaagaacccaaataccacaaagccaaatcaattgaagaaaagaccttcttggattataacaacctgaagaataa 19836961  T
Q  133 acaaactgataataatggtccaaaacctgatgaggatccacataaaacacgtcaatccaagttttaatttgttgccaaagatcactaaaaatagaacaac 232  Q
    ||||||||||||||||||||||||||||| || || |||||| |||||||  ||||||||||||||||| ||||||| |  || | |||||||  ||||     
T  19836962 acaaactgataataatggtccaaaacctgttgggggtccacagaaaacacaccaatccaagttttaattcgttgccataagtcgccaaaaataagacaat 19837061  T
Q  233 gaataattaagtgatctattgt 254  Q
    |||||||||| ||||| |||||    
T  19837062 gaataattaaatgatcaattgt 19837083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 91; E-Value: 7e-44
Query Start/End: Original strand, 16 - 250
Target Start/End: Complemental strand, 19310017 - 19309783
Alignment:
Q  16 gttttagctgtgttgacaaacaatcttttatttctttcattccaaagaactcaaataccacagagccaaatcaaatgaagaaaagaccttcttggagcat 115  Q
    ||||| ||||| |||||||| ||||| | ||||||||| | ||||||||| ||||||||||| ||||||| ||||||||| ||||||||||||| |||||    
T  19310017 gtttttgctgtattgacaaataatctctgatttctttcgtgccaaagaacccaaataccacaaagccaaaccaaatgaaggaaagaccttcttgaagcat 19309918  T
Q  116 aatcatctgaagaataaacaaactgataataatggtccaaaacctgatgaggatccacataaaacacgtcaatccaagttttaatttgttgccaaagatc 215  Q
        | |  ||||  ||||||| ||||||||||| |||| ||||||||  ||||||||  |||| ||  ||||||||||||||||||||||||||||| |    
T  19309917 tgctaccaaaagagaaaacaaattgataataatgatccagaacctgatagggatccacggaaaatacaccaatccaagttttaatttgttgccaaagacc 19309818  T
Q  216 actaaaaatagaacaacgaataattaagtgatcta 250  Q
    || |||||||| |||| |||||||||| |||||||    
T  19309817 accaaaaataggacaatgaataattaaatgatcta 19309783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 16 - 214
Target Start/End: Complemental strand, 8933160 - 8932962
Alignment:
Q  16 gttttagctgtgttgacaaacaatcttttatttctttcattccaaagaactcaaataccacagagccaaatcaaatgaagaaaagaccttcttggagcat 115  Q
    ||||||| ||||||| |||| | |||||  |||||||||||||| ||||| ||||||||||| |||||||||||||| || ||||||| || |||||| |    
T  8933160 gttttagttgtgttggcaaaaagtctttggtttctttcattccagagaacccaaataccacaaagccaaatcaaatgtaggaaagaccgtcgtggagcgt 8933061  T
Q  116 aatcatctgaagaataaacaaactgataataatggtccaaaacctgatgaggatccacataaaacacgtcaatccaagttttaatttgttgccaaagat 214  Q
    || ||  |||||| | |||||| ||||||||||| |||  |||||| |||||||||| |||||||||  |||||||||| |||||||||||||||||||    
T  8933060 aaccacatgaagagtgaacaaattgataataatgatccgtaacctgttgaggatccaaataaaacacaccaatccaagtcttaatttgttgccaaagat 8932962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 40 - 173
Target Start/End: Complemental strand, 10009595 - 10009462
Alignment:
Q  40 cttttatttctttcattccaaagaactcaaataccacagagccaaatcaaatgaagaaaagaccttcttggagcataatcatctgaagaataaacaaact 139  Q
    |||| ||||||||||||||||| ||| ||||| | ||| |||||||||||||| |||||||| |  |  ||||||||| || |||||||||||| ||| |    
T  10009595 ctttgatttctttcattccaaataacccaaatgcaacatagccaaatcaaatgtagaaaagatcgacgaggagcataaccacctgaagaataaataaatt 10009496  T
Q  140 gataataatggtccaaaacctgatgaggatccac 173  Q
    |||   |||| |||  |||||| |||||||||||    
T  10009495 gatggaaatgatccgtaacctgttgaggatccac 10009462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 39 - 92
Target Start/End: Original strand, 7446494 - 7446547
Alignment:
Q  39 tcttttatttctttcattccaaagaactcaaataccacagagccaaatcaaatg 92  Q
    ||||| ||||||||||||||||| ||| ||||| | ||||||||||||||||||    
T  7446494 tctttgatttctttcattccaaataacccaaatgcaacagagccaaatcaaatg 7446547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 45 - 103
Target Start/End: Original strand, 14528487 - 14528545
Alignment:
Q  45 atttctttcattccaaagaactcaaataccacagagccaaatcaaatgaagaaaagacc 103  Q
    ||||||||| ||||||||||| ||| ||| ||| |||||||||||||| | ||||||||    
T  14528487 atttctttcgttccaaagaacccaattacaacaaagccaaatcaaatgtataaaagacc 14528545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 58 - 168
Target Start/End: Complemental strand, 25459412 - 25459302
Alignment:
Q  58 caaagaactcaaataccacagagccaaatcaaatgaagaaaagaccttcttggagcataatcatctgaagaataaacaaactgataataatggtccaaaa 157  Q
    |||||||| ||||||| ||| ||||||| |||||||||||| ||||  |  ||||||||  || ||||||| | ||||||||| ||| |||| |||| ||    
T  25459412 caaagaacccaaatacaacaaagccaaaccaaatgaagaaatgaccgacggggagcataggcacctgaagagtgaacaaactggtaaaaatgatccataa 25459313  T
Q  158 cctgatgagga 168  Q
    || | ||||||    
T  25459312 cccgttgagga 25459302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 39 - 101
Target Start/End: Original strand, 38654842 - 38654904
Alignment:
Q  39 tcttttatttctttcattccaaagaactcaaataccacagagccaaatcaaatgaagaaaaga 101  Q
    ||||| ||| ||||||||||||| |||||| || | ||| |||||||||||||| ||||||||    
T  38654842 tctttgattcctttcattccaaataactcagatgcaacatagccaaatcaaatgtagaaaaga 38654904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 51 - 92
Target Start/End: Complemental strand, 5592261 - 5592220
Alignment:
Q  51 ttcattccaaagaactcaaataccacagagccaaatcaaatg 92  Q
    ||||||||||||||| ||||||| ||| ||||||||||||||    
T  5592261 ttcattccaaagaacccaaatacaacatagccaaatcaaatg 5592220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 275 - 316
Target Start/End: Original strand, 38346741 - 38346782
Alignment:
Q  275 ttttacctaatcaaataattgaatttagtcctaattttaaat 316  Q
    ||||| ||||||||||||||||||||| |||||| |||||||    
T  38346741 ttttatctaatcaaataattgaatttaatcctaactttaaat 38346782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 51 - 92
Target Start/End: Original strand, 48126109 - 48126150
Alignment:
Q  51 ttcattccaaagaactcaaataccacagagccaaatcaaatg 92  Q
    ||||||||||||||| ||||||| ||| ||||||||||||||    
T  48126109 ttcattccaaagaacccaaatacaacatagccaaatcaaatg 48126150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 183; Significance: 8e-99; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 183; E-Value: 8e-99
Query Start/End: Original strand, 16 - 254
Target Start/End: Original strand, 13403792 - 13404030
Alignment:
Q  16 gttttagctgtgttgacaaacaatcttttatttctttcattccaaagaactcaaataccacagagccaaatcaaatgaagaaaagaccttcttggagcat 115  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||| || ||||||||||||||||||||||||||| ||||||    
T  13403792 gttttagctgtgttgacaaacagtcttttatttctttcattccaaagaacccaaataccacaaagtcaaatcaaatgaagaaaagaccttctttgagcat 13403891  T
Q  116 aatcatctgaagaataaacaaactgataataatggtccaaaacctgatgaggatccacataaaacacgtcaatccaagttttaatttgttgccaaagatc 215  Q
    || || ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||| |||||    
T  13403892 aaccacctgaagaataaacaaactgataataatggtccaaaacctgatgaggatccacaaaaaacacgccaatccaagttttaatttgttgccagagatc 13403991  T
Q  216 actaaaaatagaacaacgaataattaagtgatctattgt 254  Q
    || |||||||| |||| ||||||||||||| ||||||||    
T  13403992 accaaaaataggacaatgaataattaagtggtctattgt 13404030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 16 - 250
Target Start/End: Original strand, 24732850 - 24733084
Alignment:
Q  16 gttttagctgtgttgacaaacaatcttttatttctttcattccaaagaactcaaataccacagagccaaatcaaatgaagaaaagaccttcttggagcat 115  Q
    ||||| ||||| |||||||| | ||| | ||||||||  | ||||||||||||||||||||| ||||||| ||||||||| ||||||||||||| |||||    
T  24732850 gtttttgctgtattgacaaatattctctgatttcttttgtgccaaagaactcaaataccacaaagccaaaccaaatgaaggaaagaccttcttgaagcat 24732949  T
Q  116 aatcatctgaagaataaacaaactgataataatggtccaaaacctgatgaggatccacataaaacacgtcaatccaagttttaatttgttgccaaagatc 215  Q
        | | |||||  ||||||| ||||||||||| |||| |||||||| |||||||||  |||||||  |||||||||||||||||||||||| ||||||    
T  24732950 tgctaccagaagagaaaacaaattgataataatgatccagaacctgataaggatccacggaaaacacaccaatccaagttttaatttgttgccgaagatc 24733049  T
Q  216 actaaaaatagaacaacgaataattaagtgatcta 250  Q
    || |||||||| |||| |||||||||| |||||||    
T  24733050 accaaaaataggacaatgaataattaaatgatcta 24733084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 28 - 250
Target Start/End: Complemental strand, 41692178 - 41691956
Alignment:
Q  28 ttgacaaacaatcttttatttctttcattccaaagaactcaaataccacagagccaaatcaaatgaagaaaagaccttcttggagcataatcatctgaag 127  Q
    |||||||| | ||| | ||||||||||| ||||||||| ||||||||||| ||||||| |||||||||||| |||||||||||| ||||   | | ||||    
T  41692178 ttgacaaatagtctctgatttctttcatgccaaagaacccaaataccacaaagccaaaccaaatgaagaaacgaccttcttggaccatagctacccgaag 41692079  T
Q  128 aataaacaaactgataataatggtccaaaacctgatgaggatccacataaaacacgtcaatccaagttttaatttgttgccaaagatcactaaaaataga 227  Q
    |  ||||||| ||||||||||| |||| |||||||  |||||| ||  |||||||  ||||||||| ||||||||||||||||||||||| ||||||||     
T  41692078 agaaaacaaattgataataatgatccagaacctgagaaggatctacggaaaacacaccaatccaagatttaatttgttgccaaagatcaccaaaaatagg 41691979  T
Q  228 acaacgaataattaagtgatcta 250  Q
    |||| ||||||||||||||||||    
T  41691978 acaatgaataattaagtgatcta 41691956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 81; E-Value: 6e-38
Query Start/End: Original strand, 113 - 225
Target Start/End: Original strand, 43599586 - 43599698
Alignment:
Q  113 cataatcatctgaagaataaacaaactgataataatggtccaaaacctgatgaggatccacataaaacacgtcaatccaagttttaatttgttgccaaag 212  Q
    ||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||  ||||||||||||||||||||||||| ||    
T  43599586 cataaccacctgaagaataaacaaactgataataatggtccaaaacctgatgaggatccacagaaaacacaccaatccaagttttaatttgttgccagag 43599685  T
Q  213 atcactaaaaata 225  Q
    | ||| |||||||    
T  43599686 agcacaaaaaata 43599698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 74; E-Value: 9e-34
Query Start/End: Original strand, 16 - 117
Target Start/End: Original strand, 43599199 - 43599300
Alignment:
Q  16 gttttagctgtgttgacaaacaatcttttatttctttcattccaaagaactcaaataccacagagccaaatcaaatgaagaaaagaccttcttggagcat 115  Q
    ||||||||||||||| |||||||||| |||||| ||||||| |||||||| ||||||||||| ||| |||||||||||||||||||||||||||||||||    
T  43599199 gttttagctgtgttggcaaacaatctattatttatttcatttcaaagaacccaaataccacaaagcaaaatcaaatgaagaaaagaccttcttggagcat 43599298  T
Q  116 aa 117  Q
    ||    
T  43599299 aa 43599300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 32 - 193
Target Start/End: Complemental strand, 38891779 - 38891618
Alignment:
Q  32 caaacaatcttttatttctttcattccaaagaactcaaataccacagagccaaatcaaatgaagaaaagaccttcttggagcataatcatctgaagaata 131  Q
    |||| ||||||| ||||||||||||||||| ||| || || | ||||||| |||||||||| |  |||||||  |   |||||||  ||  |||||| ||    
T  38891779 caaagaatctttgatttctttcattccaaataacccatatgcaacagagctaaatcaaatgtaagaaagaccaacgaagagcatagccacatgaagagta 38891680  T
Q  132 aacaaactgataataatggtccaaaacctgatgaggatccacataaaacacgtcaatccaag 193  Q
    || ||| || |   |||| |||| |||||||||||||||||| ||| | || ||||||||||    
T  38891679 aataaattggtggaaatgatccataacctgatgaggatccacttaataaacatcaatccaag 38891618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 181; Significance: 1e-97; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 181; E-Value: 1e-97
Query Start/End: Original strand, 16 - 300
Target Start/End: Complemental strand, 50543085 - 50542803
Alignment:
Q  16 gttttagctgtgttgacaaacaatcttttatttctttcattccaaagaactcaaataccacagagccaaatcaaatgaagaaaagaccttcttggagcat 115  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||  |||||||||| ||||||||||||||||||||||| |||||||||||||    
T  50543085 gttttagctgtgttgacaaacaatcttttatttctttcatttcaaagaacctaaataccacaaagccaaatcaaatgaagaaaagatcttcttggagcat 50542986  T
Q  116 aatcatctgaagaataaacaaactgataataatggtccaaaacctgatgaggatccacataaaacacgtcaatccaagttttaatttgttgccaaagatc 215  Q
    || || ||||| |||||| |||||||||||||||||||||||| |||| |||||||||| ||||||||||||||||||||||||||||||| ||||||||    
T  50542985 aaccacctgaaaaataaataaactgataataatggtccaaaacttgattaggatccacagaaaacacgtcaatccaagttttaatttgttgtcaaagatc 50542886  T
Q  216 actaaaaatagaacaacgaataattaagtgatctattgtatttataaannnnnnnnccgttttacctaatcaaataattgaattt 300  Q
    || ||||| || ||||| |||||||||||| ||||||||||||||||         |||||||||||||||||||||||||||||    
T  50542885 accaaaaacaggacaacaaataattaagtggtctattgtatttataa--tttttttccgttttacctaatcaaataattgaattt 50542803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 175; E-Value: 5e-94
Query Start/End: Original strand, 16 - 254
Target Start/End: Original strand, 19232796 - 19233034
Alignment:
Q  16 gttttagctgtgttgacaaacaatcttttatttctttcattccaaagaactcaaataccacagagccaaatcaaatgaagaaaagaccttcttggagcat 115  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||  |||||||||||||||||||||||||||||||||||||    
T  19232796 gttttagctgtgttgacaaacaatcttttatttctttcattccaaagaacccaaataccaccaagccaaatcaaatgaagaaaagaccttcttggagcat 19232895  T
Q  116 aatcatctgaagaataaacaaactgataataatggtccaaaacctgatgaggatccacataaaacacgtcaatccaagttttaatttgttgccaaagatc 215  Q
    || ||  |||||||||||||||||||||||||||||||||||| ||||||||||||| | |||||||| ||||||||||||||||||||||||| ||||     
T  19232896 aaccacttgaagaataaacaaactgataataatggtccaaaacatgatgaggatccatagaaaacacgccaatccaagttttaatttgttgccagagatt 19232995  T
Q  216 actaaaaatagaacaacgaataattaagtgatctattgt 254  Q
    || |||||||| |||| ||||||||||||| ||||||||    
T  19232996 accaaaaataggacaatgaataattaagtggtctattgt 19233034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 171; E-Value: 1e-91
Query Start/End: Original strand, 16 - 254
Target Start/End: Complemental strand, 16897005 - 16896767
Alignment:
Q  16 gttttagctgtgttgacaaacaatcttttatttctttcattccaaagaactcaaataccacagagccaaatcaaatgaagaaaagaccttcttggagcat 115  Q
    |||||||||||| ||| ||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  16897005 gttttagctgtgctgataaacaatctattatttctttcattccaaagaactcaaataccacaaagccaaatcaaatgaagaaaagaccttcttggagcat 16896906  T
Q  116 aatcatctgaagaataaacaaactgataataatggtccaaaacctgatgaggatccacataaaacacgtcaatccaagttttaatttgttgccaaagatc 215  Q
    || || |||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||  ||||||||||||||||||||||||| ||| |    
T  16896905 aaccacctgaagaataaataaactgataataatggtccaaaacctgatgaggatccacaaaaaacacaccaatccaagttttaatttgttgccagagagc 16896806  T
Q  216 actaaaaatagaacaacgaataattaagtgatctattgt 254  Q
    || |||||||| ||||  |||||||||||| ||||||||    
T  16896805 accaaaaataggacaattaataattaagtggtctattgt 16896767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 167; E-Value: 3e-89
Query Start/End: Original strand, 16 - 254
Target Start/End: Complemental strand, 30937089 - 30936851
Alignment:
Q  16 gttttagctgtgttgacaaacaatcttttatttctttcattccaaagaactcaaataccacagagccaaatcaaatgaagaaaagaccttcttggagcat 115  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||    
T  30937089 gttttagctgtgttgacaaacaatctattatttctttcattccaaagaacccaaataccacaaagccaaatcaaatgaagaaaagaccttcttggagcat 30936990  T
Q  116 aatcatctgaagaataaacaaactgataataatggtccaaaacctgatgaggatccacataaaacacgtcaatccaagttttaatttgttgccaaagatc 215  Q
    ||||| ||||||||||||||| ||||| ||||||| ||||||||||||||||||||||| |||| ||  | ||||||||||||||||||||||| ||| |    
T  30936989 aatcacctgaagaataaacaatctgatgataatgggccaaaacctgatgaggatccacaaaaaatacaccgatccaagttttaatttgttgccagagagc 30936890  T
Q  216 actaaaaatagaacaacgaataattaagtgatctattgt 254  Q
    || |||||||| |||| ||||||||||||| ||||||||    
T  30936889 accaaaaataggacaatgaataattaagtggtctattgt 30936851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 167; E-Value: 3e-89
Query Start/End: Original strand, 16 - 226
Target Start/End: Original strand, 31644640 - 31644850
Alignment:
Q  16 gttttagctgtgttgacaaacaatcttttatttctttcattccaaagaactcaaataccacagagccaaatcaaatgaagaaaagaccttcttggagcat 115  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||||| | ||||||||| |||||||||||||||||||||||||||||||||||||    
T  31644640 gttttagctgtgttgacaaacagtcttttatttctttcattccaaagaacccgaataccacaaagccaaatcaaatgaagaaaagaccttcttggagcat 31644739  T
Q  116 aatcatctgaagaataaacaaactgataataatggtccaaaacctgatgaggatccacataaaacacgtcaatccaagttttaatttgttgccaaagatc 215  Q
    || || ||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||| ||||||||||||||||||||||||| |||||    
T  31644740 aaccacctgaagaataaacaaactgataataatggtccaaaacttgatgaggatccacagaaaacacgccaatccaagttttaatttgttgccagagatc 31644839  T
Q  216 actaaaaatag 226  Q
    || ||||||||    
T  31644840 accaaaaatag 31644850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 126; E-Value: 9e-65
Query Start/End: Original strand, 33 - 254
Target Start/End: Original strand, 40969941 - 40970162
Alignment:
Q  33 aaacaatcttttatttctttcattccaaagaactcaaataccacagagccaaatcaaatgaagaaaagaccttcttggagcataatcatctgaagaataa 132  Q
    ||||| ||||| ||||||||||||||||||||| ||||||||||| ||||||||||| |||||||||||||||||||||| ||||  | |||||||||||    
T  40969941 aaacagtctttgatttctttcattccaaagaacccaaataccacaaagccaaatcaattgaagaaaagaccttcttggagtataacaacctgaagaataa 40970040  T
Q  133 acaaactgataataatggtccaaaacctgatgaggatccacataaaacacgtcaatccaagttttaatttgttgccaaagatcactaaaaatagaacaac 232  Q
    ||||||||||||||||||||||||||||| || || |||||| |||||||  ||||||||||||||||||||||||| |  || | |||||||| ||||     
T  40970041 acaaactgataataatggtccaaaacctgttgggggtccacagaaaacacaccaatccaagttttaatttgttgccataagtcgccaaaaataggacaat 40970140  T
Q  233 gaataattaagtgatctattgt 254  Q
    |||||||||| ||||| |||||    
T  40970141 gaataattaaatgatcaattgt 40970162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 22 - 254
Target Start/End: Original strand, 11583778 - 11584010
Alignment:
Q  22 gctgtgttgacaaacaatcttttatttctttcattccaaagaactcaaataccacagagccaaatcaaatgaagaaaagaccttcttggagcataatcat 121  Q
    ||||||||| ||||||||||||  ||||||||||| |||||||| ||||||||||| ||||  || |||| |||||| ||| |||||| || |||| ||     
T  11583778 gctgtgttggcaaacaatctttggtttctttcatttcaaagaacccaaataccacaaagccttataaaattaagaaaggacattcttgcagtataaccac 11583877  T
Q  122 ctgaagaataaacaaactgataataatggtccaaaacctgatgaggatccacataaaacacgtcaatccaagttttaatttgttgccaaagatcactaaa 221  Q
    |||||||||||||||||||||||||||| ||  ||||||| |||||||||||| ||||||   |||||||||| |||||||| |||||||||||||  ||    
T  11583878 ctgaagaataaacaaactgataataatgatctgaaacctgttgaggatccacagaaaacagaccaatccaagtcttaatttgctgccaaagatcacccaa 11583977  T
Q  222 aatagaacaacgaataattaagtgatctattgt 254  Q
    ||||| |||| |||| || ||||||||||||||    
T  11583978 aataggacaatgaatgatcaagtgatctattgt 11584010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 32 - 173
Target Start/End: Complemental strand, 19653171 - 19653030
Alignment:
Q  32 caaacaatcttttatttctttcattccaaagaactcaaataccacagagccaaatcaaatgaagaaaagaccttcttggagcataatcatctgaagaata 131  Q
    |||| |||||||  || ||||||||||||| ||| ||||| | ||| | |||||||||||| ||||| || |  |  ||||||||| || ||||||||||    
T  19653171 caaataatctttggttcctttcattccaaataacccaaatgcaacataaccaaatcaaatgtagaaacgatcgacgaggagcataaccacctgaagaata 19653072  T
Q  132 aacaaactgataataatggtccaaaacctgatgaggatccac 173  Q
    || ||| || |   |||| |||| ||||||||||||||||||    
T  19653071 aataaattggtggaaatgatccataacctgatgaggatccac 19653030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 45 - 101
Target Start/End: Original strand, 33980756 - 33980812
Alignment:
Q  45 atttctttcattccaaagaactcaaataccacagagccaaatcaaatgaagaaaaga 101  Q
    |||||||||||||||||  || || || | |||||||||||||||||| ||||||||    
T  33980756 atttctttcattccaaattacccagatgcaacagagccaaatcaaatgtagaaaaga 33980812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 179; Significance: 2e-96; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 179; E-Value: 2e-96
Query Start/End: Original strand, 16 - 254
Target Start/End: Complemental strand, 3153668 - 3153430
Alignment:
Q  16 gttttagctgtgttgacaaacaatcttttatttctttcattccaaagaactcaaataccacagagccaaatcaaatgaagaaaagaccttcttggagcat 115  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||    
T  3153668 gttttagctgtgttgacaaacaatctattatttctttcattccaaagaacccaaataccacaaagccaaatcaaatgaagaaaagaccttcttggagcat 3153569  T
Q  116 aatcatctgaagaataaacaaactgataataatggtccaaaacctgatgaggatccacataaaacacgtcaatccaagttttaatttgttgccaaagatc 215  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||  | ||||||||||||||||||||||| ||| |    
T  3153568 aatcacctgaagaataaacaaactgataataatggtccaaaacctgatgaggatccacaaaaaacacaccgatccaagttttaatttgttgccagagagc 3153469  T
Q  216 actaaaaatagaacaacgaataattaagtgatctattgt 254  Q
     | |||||||| |||| ||||||||||||| ||||||||    
T  3153468 tccaaaaataggacaatgaataattaagtggtctattgt 3153430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 167; E-Value: 3e-89
Query Start/End: Original strand, 16 - 254
Target Start/End: Original strand, 44939940 - 44940178
Alignment:
Q  16 gttttagctgtgttgacaaacaatcttttatttctttcattccaaagaactcaaataccacagagccaaatcaaatgaagaaaagaccttcttggagcat 115  Q
    |||||||||||||||||||||||||| | |||||||| |||||||| ||| ||||||||||| |||||||||||||||||||||||||||||||||||||    
T  44939940 gttttagctgtgttgacaaacaatctataatttcttttattccaaataacccaaataccacaaagccaaatcaaatgaagaaaagaccttcttggagcat 44940039  T
Q  116 aatcatctgaagaataaacaaactgataataatggtccaaaacctgatgaggatccacataaaacacgtcaatccaagttttaatttgttgccaaagatc 215  Q
    || || ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||  ||||||||||||||||||||||||| ||| |    
T  44940040 aaccacctgaagaataaacaaactgataataatggtccaaaacctgatgaggatccacagaaaacacaccaatccaagttttaatttgttgccagagagc 44940139  T
Q  216 actaaaaatagaacaacgaataattaagtgatctattgt 254  Q
    || |||||||| |||| ||||||||||||  ||||||||    
T  44940140 accaaaaataggacaatgaataattaagtagtctattgt 44940178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 155; E-Value: 4e-82
Query Start/End: Original strand, 16 - 254
Target Start/End: Original strand, 79485 - 79723
Alignment:
Q  16 gttttagctgtgttgacaaacaatcttttatttctttcattccaaagaactcaaataccacagagccaaatcaaatgaagaaaagaccttcttggagcat 115  Q
    ||||||| |||||||||||||||||| ||||||||||||||||||||||| ||||||||||| || || |||||||||||||||||||||||| ||||||    
T  79485 gttttagttgtgttgacaaacaatctattatttctttcattccaaagaacccaaataccacaaagtcagatcaaatgaagaaaagaccttctttgagcat 79584  T
Q  116 aatcatctgaagaataaacaaactgataataatggtccaaaacctgatgaggatccacataaaacacgtcaatccaagttttaatttgttgccaaagatc 215  Q
    || || |  ||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||  ||||||||||||||||||||||||  |||||    
T  79585 aaccacccaaagaataaacaaactgataataatggtccaaaatctgatgaggatccacagaaaacacaccaatccaagttttaatttgttgccggagatc 79684  T
Q  216 actaaaaatagaacaacgaataattaagtgatctattgt 254  Q
    || |||||||| |||| ||||||||||||| ||||||||    
T  79685 accaaaaataggacaatgaataattaagtggtctattgt 79723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 19 - 61
Target Start/End: Original strand, 10060055 - 10060097
Alignment:
Q  19 ttagctgtgttgacaaacaatcttttatttctttcattccaaa 61  Q
    ||||||||||||||||||||||| |||||||||||||||||||    
T  10060055 ttagctgtgttgacaaacaatctattatttctttcattccaaa 10060097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 49 - 251
Target Start/End: Original strand, 14164136 - 14164338
Alignment:
Q  49 ctttcattccaaagaactcaaataccacagagccaaatcaaatgaagaaaagaccttcttggagcataatcatctgaagaataaacaaactgataataat 148  Q
    |||||| |||||||||| || |||| ||| ||||||| |||||| |  || ||||  | ||||| |||  ||  |||||||| |||||| |||||| |||    
T  14164136 ctttcagtccaaagaacccacatacaacatagccaaaccaaatgtaagaatgaccgccgtggagtatatgcaattgaagaatgaacaaattgataaaaat 14164235  T
Q  149 ggtccaaaacctgatgaggatccacataaaacacgtcaatccaagttttaatttgttgccaaagatcactaaaaatagaacaacgaataattaagtgatc 248  Q
    | |||  |||||| || ||||||||  || ||||  |||||||||  ||||| || | ||||||||||| |||||||| |||| |||| ||||| |||||    
T  14164236 gatccgtaacctgttggggatccactgaatacacaccaatccaagacttaatatgcttccaaagatcaccaaaaatagtacaatgaattattaaatgatc 14164335  T
Q  249 tat 251  Q
    |||    
T  14164336 tat 14164338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 122 - 251
Target Start/End: Original strand, 2177096 - 2177225
Alignment:
Q  122 ctgaagaataaacaaactgataataatggtccaaaacctgatgaggatccacataaaacacgtcaatccaagttttaatttgttgccaaagatcactaaa 221  Q
    ||||||||| |||||| |||||| |||| |||  |||||| || ||||||||  || ||||  |||||||||  ||||| || | ||||||||||| |||    
T  2177096 ctgaagaatgaacaaattgataaaaatgatccgtaacctgttggggatccactaaatacacaccaatccaagacttaatatgcttccaaagatcaccaaa 2177195  T
Q  222 aatagaacaacgaataattaagtgatctat 251  Q
    ||||   ||| |||| ||||| ||||||||    
T  2177196 aatattgcaatgaattattaaatgatctat 2177225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 175; Significance: 5e-94; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 175; E-Value: 5e-94
Query Start/End: Original strand, 16 - 254
Target Start/End: Original strand, 34206040 - 34206278
Alignment:
Q  16 gttttagctgtgttgacaaacaatcttttatttctttcattccaaagaactcaaataccacagagccaaatcaaatgaagaaaagaccttcttggagcat 115  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||| ||||||||||||    
T  34206040 gttttagctgtgttgacaaacaatctattatttctttcattccaaagaacccaaataccacaaagccaaatcaaatgaagaaaagacattcttggagcat 34206139  T
Q  116 aatcatctgaagaataaacaaactgataataatggtccaaaacctgatgaggatccacataaaacacgtcaatccaagttttaatttgttgccaaagatc 215  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||  | ||||||||||||||||||||||| ||| |    
T  34206140 aatcacctgaagaataaacaaactgataataatggtccaaaacctgatgaggatccacaaaaaacacaccgatccaagttttaatttgttgccagagagc 34206239  T
Q  216 actaaaaatagaacaacgaataattaagtgatctattgt 254  Q
     | |||||||| |||| ||||||||||||| ||||||||    
T  34206240 tccaaaaataggacaatgaataattaagtggtctattgt 34206278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 172; E-Value: 3e-92
Query Start/End: Original strand, 19 - 254
Target Start/End: Complemental strand, 43109331 - 43109096
Alignment:
Q  19 ttagctgtgttgacaaacaatcttttatttctttcattccaaagaactcaaataccacagagccaaatcaaatgaagaaaagaccttcttggagcataat 118  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||| |||||||||||||||    
T  43109331 ttagctgtgttgacaaacaatctattatttctttcattccaaagaacccaaataccacaaagccaaatcaaatgaagaaaagactttcttggagcataat 43109232  T
Q  119 catctgaagaataaacaaactgataataatggtccaaaacctgatgaggatccacataaaacacgtcaatccaagttttaatttgttgccaaagatcact 218  Q
    || ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||  | ||||||||||||||||||||||| ||| | |     
T  43109231 cacctgaagaataaacaaactgataataatggtccaaaacctgatgaggatccacaaaaaacacaccgatccaagttttaatttgttgccagagagctcc 43109132  T
Q  219 aaaaatagaacaacgaataattaagtgatctattgt 254  Q
    |||||||| |||| ||||||||||||| ||||||||    
T  43109131 aaaaataggacaatgaataattaagtggtctattgt 43109096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 168; E-Value: 8e-90
Query Start/End: Original strand, 19 - 254
Target Start/End: Original strand, 4163752 - 4163987
Alignment:
Q  19 ttagctgtgttgacaaacaatcttttatttctttcattccaaagaactcaaataccacagagccaaatcaaatgaagaaaagaccttcttggagcataat 118  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  4163752 ttagctgtgttgacaaacaatctattatttctttcattccaaagaacccaaataccacaaagccaaatcaaatgaagaaaagaccttcttggagcataat 4163851  T
Q  119 catctgaagaataaacaaactgataataatggtccaaaacctgatgaggatccacataaaacacgtcaatccaagttttaatttgttgccaaagatcact 218  Q
    || ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||  | ||||||||||||||||| ||||| ||| | |     
T  4163852 cacctgaagaataaacaaactgataataatggtccaaaacctgatgaggatccacaaaaaacacaccgatccaagttttaatttgctgccagagagctcc 4163951  T
Q  219 aaaaatagaacaacgaataattaagtgatctattgt 254  Q
    |||||||| |||| ||||||||||| | ||||||||    
T  4163952 aaaaataggacaatgaataattaagaggtctattgt 4163987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 166; E-Value: 1e-88
Query Start/End: Original strand, 276 - 470
Target Start/End: Complemental strand, 48495735 - 48495545
Alignment:
Q  276 tttacctaatcaaataattgaatttagtcctaattttaaatttcaaatttgatgtagtcctaattaagttaagttttaaatcaaatctaattcaagtcaa 375  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48495735 tttacctaatcaaataattgaatttagtcctaattttaaatttgaaatttgatgtagtcctaattaagttaagttttaaatcaaatctaattcaagtcaa 48495636  T
Q  376 gaacagttctatcaatcaacatgaaagatggttagtttcaagttgcttgcttgctccactccttggctgctggccacccagatgtctatgacatt 470  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||    |||||||||||||||||||||||||| |||||||||||||||||    
T  48495635 gaacagttctatcaatcaacatgaaatatggttagtttcaagttgct----tgctccactccttggctgctggccactcagatgtctatgacatt 48495545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 113; E-Value: 5e-57
Query Start/End: Original strand, 46 - 254
Target Start/End: Original strand, 45459172 - 45459380
Alignment:
Q  46 tttctttcattccaaagaactcaaataccacagagccaaatcaaatgaagaaaagaccttcttggagcataatcatctgaagaataaacaaactgataat 145  Q
    |||||||||||||||||||| ||||||||||| ||||||||||| ||||||||| ||||||||| || |||| || ||||||||||||||||||||||||    
T  45459172 tttctttcattccaaagaacccaaataccacaaagccaaatcaattgaagaaaataccttcttgaagtataaccacctgaagaataaacaaactgataat 45459271  T
Q  146 aatggtccaaaacctgatgaggatccacataaaacacgtcaatccaagttttaatttgttgccaaagatcactaaaaatagaacaacgaataattaagtg 245  Q
    |||||||||||||||| ||  | |||||| ||||||   ||||||||||||||||||||||||| |  || | |||||||| |||| |||||||||||||    
T  45459272 aatggtccaaaacctgttggaggtccacagaaaacagaccaatccaagttttaatttgttgccataagtcgccaaaaataggacaatgaataattaagtg 45459371  T
Q  246 atctattgt 254  Q
    ||| |||||    
T  45459372 atcaattgt 45459380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 16 - 179
Target Start/End: Complemental strand, 39295803 - 39295640
Alignment:
Q  16 gttttagctgtgttgacaaacaatcttttatttctttcattccaaagaactcaaataccacagagccaaatcaaatgaagaaaagaccttcttggagcat 115  Q
    ||||||| ||||||| |||| | |||||  |||||||||||||||||||  ||||||||||| |||||||||||||| |||||||||| |  || ||  |    
T  39295803 gttttagttgtgttggcaaatagtctttggtttctttcattccaaagaatccaaataccacaaagccaaatcaaatgtagaaaagaccattgtgaagtgt 39295704  T
Q  116 aatcatctgaagaataaacaaactgataataatggtccaaaacctgatgaggatccacataaaa 179  Q
    || || ||||||| |||||||||||||||||||| ||||||||||| ||||| |||||| ||||    
T  39295703 aaccacctgaagagtaaacaaactgataataatgatccaaaacctgttgagggtccacagaaaa 39295640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 51 - 101
Target Start/End: Complemental strand, 8606830 - 8606780
Alignment:
Q  51 ttcattccaaagaactcaaataccacagagccaaatcaaatgaagaaaaga 101  Q
    |||| |||||||||||||||||| |||||||||||||| ||| || |||||    
T  8606830 ttcactccaaagaactcaaatacaacagagccaaatcatatggaggaaaga 8606780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 175; Significance: 5e-94; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 175; E-Value: 5e-94
Query Start/End: Original strand, 16 - 254
Target Start/End: Original strand, 16467129 - 16467367
Alignment:
Q  16 gttttagctgtgttgacaaacaatcttttatttctttcattccaaagaactcaaataccacagagccaaatcaaatgaagaaaagaccttcttggagcat 115  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||| |||||| |||||    
T  16467129 gttttagctgtgttgacaaacagtcttttatttctttcattccaaagaacccaaataccacaaagccaaatcaaatgaagaaaagacattcttgtagcat 16467228  T
Q  116 aatcatctgaagaataaacaaactgataataatggtccaaaacctgatgaggatccacataaaacacgtcaatccaagttttaatttgttgccaaagatc 215  Q
    || || || ||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||| || |||||    
T  16467229 aaccacctaaagaataaacaaattgataataatggtccaaaacctgatgaggatccacagaaaacacgccaatccaagttttaatttgttgacagagatc 16467328  T
Q  216 actaaaaatagaacaacgaataattaagtgatctattgt 254  Q
    || |||||||| |||||||||||||||||| ||||||||    
T  16467329 accaaaaataggacaacgaataattaagtggtctattgt 16467367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 171; E-Value: 1e-91
Query Start/End: Original strand, 16 - 254
Target Start/End: Original strand, 26710943 - 26711181
Alignment:
Q  16 gttttagctgtgttgacaaacaatcttttatttctttcattccaaagaactcaaataccacagagccaaatcaaatgaagaaaagaccttcttggagcat 115  Q
    |||||||||||||||||||||| | ||||||||||||||||| ||||||| ||||||||||| || |||||||||||||||||| || ||||||||||||    
T  26710943 gttttagctgtgttgacaaacatttttttatttctttcattctaaagaacccaaataccacaaaggcaaatcaaatgaagaaaatacattcttggagcat 26711042  T
Q  116 aatcatctgaagaataaacaaactgataataatggtccaaaacctgatgaggatccacataaaacacgtcaatccaagttttaatttgttgccaaagatc 215  Q
    || || ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||  ||||||||||||||||||||||||| |||||    
T  26711043 aaccacctgaagaataaacaaactgataataatggtccaaaacctgatgaggatccacagaaaacacaccaatccaagttttaatttgttgccagagatc 26711142  T
Q  216 actaaaaatagaacaacgaataattaagtgatctattgt 254  Q
    || |||||||| |||||||||||||||||| ||||||||    
T  26711143 accaaaaataggacaacgaataattaagtggtctattgt 26711181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 167; E-Value: 3e-89
Query Start/End: Original strand, 16 - 254
Target Start/End: Complemental strand, 1309097 - 1308859
Alignment:
Q  16 gttttagctgtgttgacaaacaatcttttatttctttcattccaaagaactcaaataccacagagccaaatcaaatgaagaaaagaccttcttggagcat 115  Q
    ||||||| |||||||||||| ||||| ||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||| |||||||||||||||    
T  1309097 gttttagttgtgttgacaaataatctattatttctttcattccaaagaacccaaataccacaaagccaaatcaaatgaagaaaataccttcttggagcat 1308998  T
Q  116 aatcatctgaagaataaacaaactgataataatggtccaaaacctgatgaggatccacataaaacacgtcaatccaagttttaatttgttgccaaagatc 215  Q
    || || |||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||  ||||||||||||||||||||||||| ||| |    
T  1308997 aaccacctgatgaataaacaaactgataataatggtccaaaacctgatgaggatccacagaaaacacaccaatccaagttttaatttgttgccagagagc 1308898  T
Q  216 actaaaaatagaacaacgaataattaagtgatctattgt 254  Q
    || |||||||| |||| ||||||||||||| ||||||||    
T  1308897 accaaaaataggacaatgaataattaagtggtctattgt 1308859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 163; E-Value: 7e-87
Query Start/End: Original strand, 16 - 254
Target Start/End: Complemental strand, 33146898 - 33146661
Alignment:
Q  16 gttttagctgtgttgacaaacaatcttttatttctttcattccaaagaactcaaataccacagagccaaatcaaatgaagaaaagaccttcttggagcat 115  Q
    |||||||||||||||| ||||| ||||||||||||||||||||||||||| ||||||||||| | ||||||||||||||||||| |||||||||||||||    
T  33146898 gttttagctgtgttgataaacagtcttttatttctttcattccaaagaacccaaataccacaaaaccaaatcaaatgaagaaaataccttcttggagcat 33146799  T
Q  116 aatcatctgaagaataaacaaactgataataatggtccaaaacctgatgaggatccacataaaacacgtcaatccaagttttaatttgttgccaaagatc 215  Q
    || ||  |||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||| ||||||||||||||||||||||||||| ||||     
T  33146798 aaccacttgaagaataaacaaactgataataatggtccaaaacctaatgagg-tccacataaaacatgtcaatccaagttttaatttgttgccagagatt 33146700  T
Q  216 actaaaaatagaacaacgaataattaagtgatctattgt 254  Q
    || |||||||| |||| ||||||||||||| ||||||||    
T  33146699 accaaaaataggacaatgaataattaagtggtctattgt 33146661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 22 - 254
Target Start/End: Complemental strand, 5875033 - 5874801
Alignment:
Q  22 gctgtgttgacaaacaatcttttatttctttcattccaaagaactcaaataccacagagccaaatcaaatgaagaaaagaccttcttggagcataatcat 121  Q
    ||||||||  |||||||||||| ||||||||||||||||||||| ||||||||||| ||||||||||| | ||||||| ||||||||| || |||| ||     
T  5875033 gctgtgttagcaaacaatctttgatttctttcattccaaagaacccaaataccacaaagccaaatcaattaaagaaaaaaccttcttgaagtataaccaa 5874934  T
Q  122 ctgaagaataaacaaactgataataatggtccaaaacctgatgaggatccacataaaacacgtcaatccaagttttaatttgttgccaaagatcactaaa 221  Q
    |||||||| |||||||||||||||||||||| |||||||| ||  | |||||| |||||||   |||||||||||||||||||||||| |  ||   |||    
T  5874933 ctgaagaaaaaacaaactgataataatggtcaaaaacctgttggaggtccacagaaaacacaaaaatccaagttttaatttgttgccataagtcgtcaaa 5874834  T
Q  222 aatagaacaacgaataattaagtgatctattgt 254  Q
    ||||| |||| |||||||||||||||| |||||    
T  5874833 aataggacaatgaataattaagtgatcaattgt 5874801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 16 - 115
Target Start/End: Complemental strand, 3490270 - 3490171
Alignment:
Q  16 gttttagctgtgttgacaaacaatcttttatttctttcattccaaagaactcaaataccacagagccaaatcaaatgaagaaaagaccttcttggagcat 115  Q
    ||||| ||||| |||||||| | ||| | ||||||||| | ||||||||| ||||||||||| ||||||| ||||||||| ||||||||||||| |||||    
T  3490270 gtttttgctgtattgacaaatattctctgatttctttcttgccaaagaacccaaataccacaaagccaaaccaaatgaaggaaagaccttcttgaagcat 3490171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 16 - 161
Target Start/End: Original strand, 31933960 - 31934105
Alignment:
Q  16 gttttagctgtgttgacaaacaatcttttatttctttcattccaaagaactcaaataccacagagccaaatcaaatgaagaaaagaccttcttggagcat 115  Q
    ||||| ||||| |||||||| | ||| | ||||||||| | ||||| ||||||||||||||| ||||||| ||||||||| ||||| ||||||| |||||    
T  31933960 gtttttgctgtattgacaaatattctctgatttctttcgtgccaaaaaactcaaataccacaaagccaaaccaaatgaaggaaagagcttcttgaagcat 31934059  T
Q  116 aatcatctgaagaataaacaaactgataataatggtccaaaacctg 161  Q
        | | |||||  ||||||| ||||||||||| |||| ||||||    
T  31934060 tgctaccagaagagaaaacaaattgataataatgatccagaacctg 31934105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 186 - 250
Target Start/End: Complemental strand, 3490118 - 3490054
Alignment:
Q  186 aatccaagttttaatttgttgccaaagatcactaaaaatagaacaacgaataattaagtgatcta 250  Q
    |||||||||||||||||||||||||||||||| |||||||| |||| | |||||||| |||||||    
T  3490118 aatccaagttttaatttgttgccaaagatcaccaaaaataggacaatggataattaaatgatcta 3490054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 39 - 101
Target Start/End: Complemental strand, 17714002 - 17713940
Alignment:
Q  39 tcttttatttctttcattccaaagaactcaaataccacagagccaaatcaaatgaagaaaaga 101  Q
    ||||| ||||||||||||||||| ||| ||||| | |||||||||||||||||| | ||||||    
T  17714002 tctttgatttctttcattccaaataacccaaatgcaacagagccaaatcaaatgtaaaaaaga 17713940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 164; Significance: 2e-87; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 164; E-Value: 2e-87
Query Start/End: Original strand, 19 - 254
Target Start/End: Complemental strand, 10386340 - 10386105
Alignment:
Q  19 ttagctgtgttgacaaacaatcttttatttctttcattccaaagaactcaaataccacagagccaaatcaaatgaagaaaagaccttcttggagcataat 118  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||| |||||||||||||||    
T  10386340 ttagctgtgttgacaaacaatctattatttctttcattccaaagaacccaaataccacaaagccaaatcaaatgaagaaaagacattcttggagcataat 10386241  T
Q  119 catctgaagaataaacaaactgataataatggtccaaaacctgatgaggatccacataaaacacgtcaatccaagttttaatttgttgccaaagatcact 218  Q
    || ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||  | ||||||||||||||||| ||||| ||| | |     
T  10386240 cacctgaagaataaacaaactgataataatggtccaaaacctgatgaggatccacaaaaaacacaccgatccaagttttaatttgatgccagagagctcc 10386141  T
Q  219 aaaaatagaacaacgaataattaagtgatctattgt 254  Q
    |||||||| |||| ||||||||||| | ||||||||    
T  10386140 aaaaataggacaatgaataattaagaggtctattgt 10386105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 16 - 147
Target Start/End: Original strand, 51169791 - 51169922
Alignment:
Q  16 gttttagctgtgttgacaaacaatcttttatttctttcattccaaagaactcaaataccacagagccaaatcaaatgaagaaaagaccttcttggagcat 115  Q
    ||||||||||||||   ||| | ||||| |||||||||||||||||  || ||||||||||| ||||||||||||||||| |||||||| |  |||||||    
T  51169791 gttttagctgtgtttgtaaagagtctttgatttctttcattccaaacgacccaaataccacaaagccaaatcaaatgaaggaaagacctacggggagcat 51169890  T
Q  116 aatcatctgaagaataaacaaactgataataa 147  Q
    || || ||||||| | |||||| |||||||||    
T  51169891 aaccacctgaagagtgaacaaattgataataa 51169922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 39 - 171
Target Start/End: Complemental strand, 36193205 - 36193073
Alignment:
Q  39 tcttttatttctttcattccaaagaactcaaataccacagagccaaatcaaatgaagaaaagaccttcttggagcataatcatctgaagaataaacaaac 138  Q
    ||||| ||||||||||||||||| ||| ||||| | |||||||||||||||||| |||||||| |  |  ||||||||| |  |||||||||||| |||     
T  36193205 tctttgatttctttcattccaaataacccaaatgcaacagagccaaatcaaatgtagaaaagatcgacgaggagcataaccgcctgaagaataaataaat 36193106  T
Q  139 tgataataatggtccaaaacctgatgaggatcc 171  Q
    ||||   |||| |||  |||||| |||||||||    
T  36193105 tgatggaaatgatccgtaacctgttgaggatcc 36193073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 39 - 173
Target Start/End: Complemental strand, 35368338 - 35368204
Alignment:
Q  39 tcttttatttctttcattccaaagaactcaaataccacagagccaaatcaaatgaagaaaagaccttcttggagcataatcatctgaagaataaacaaac 138  Q
    ||||| ||| ||||||||||||| ||| ||||| | ||| |||||||||||||| |||||||| |  |  ||||||||| || ||||||| |||| |||     
T  35368338 tctttgattcctttcattccaaataacccaaatgcaacatagccaaatcaaatgtagaaaagatcgacgaggagcataaccacctgaagagtaaataaat 35368239  T
Q  139 tgataataatggtccaaaacctgatgaggatccac 173  Q
    ||||   |||| |||  ||| ||||||||||||||    
T  35368238 tgatggaaatgatccgtaacttgatgaggatccac 35368204  T

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Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 276 - 315
Target Start/End: Original strand, 51781617 - 51781656
Alignment:
Q  276 tttacctaatcaaataattgaatttagtcctaattttaaa 315  Q
    ||||| |||||||||||||||||||| |||||||||||||    
T  51781617 tttacttaatcaaataattgaatttattcctaattttaaa 51781656  T

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Target: chr5 (Bit Score: 98; Significance: 4e-48; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 33 - 254
Target Start/End: Original strand, 841710 - 841931
Alignment:
Q  33 aaacaatcttttatttctttcattccaaagaactcaaataccacagagccaaatcaaatgaagaaaagaccttcttggagcataatcatctgaagaataa 132  Q
    ||||| |||||  |||||||||||| ||||||| ||||||||||| |||||||||||||| || ||||||||| | ||| ||||| || ||||||| |||    
T  841710 aaacagtctttggtttctttcattcgaaagaacccaaataccacaaagccaaatcaaatgtaggaaagaccttatcggatcataaccacctgaagagtaa 841809  T
Q  133 acaaactgataataatggtccaaaacctgatgaggatccacataaaacacgtcaatccaagttttaatttgttgccaaagatcactaaaaatagaacaac 232  Q
    |||||| |||||||||| ||||||||||  ||||  |||| |||||||||  |||||||||| ||||||||| ||||||| |||  |||||||  ||||     
T  841810 acaaaccgataataatgatccaaaacctattgagagtccaaataaaacacaacaatccaagtcttaatttgtcgccaaaggtcataaaaaatacgacaat 841909  T
Q  233 gaataattaagtgatctattgt 254  Q
    ||||||||||||||||||||||    
T  841910 gaataattaagtgatctattgt 841931  T

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Target: chr5; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 143 - 250
Target Start/End: Original strand, 2681578 - 2681685
Alignment:
Q  143 aataatggtccaaaacctgatgaggatccacataaaacacgtcaatccaagttttaatttgttgccaaagatcactaaaaatagaacaacgaataattaa 242  Q
    ||||||||||||||||||| ||||| |||||| ||||||   |||||||| | |||||||||||||| || |||| |||||||| |||| | || |||||    
T  2681578 aataatggtccaaaacctgttgagggtccacagaaaacaaaccaatccaaatcttaatttgttgccataggtcaccaaaaataggacaaggtatgattaa 2681677  T
Q  243 gtgatcta 250  Q
    ||||||||    
T  2681678 gtgatcta 2681685  T

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Target: chr5; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 40 - 142
Target Start/End: Original strand, 26501565 - 26501667
Alignment:
Q  40 cttttatttctttcattccaaagaactcaaataccacagagccaaatcaaatgaagaaaagaccttcttggagcataatcatctgaagaataaacaaact 139  Q
    |||| ||||||||||||||||| ||| ||||| | ||| |||||||||||||| |||||||| |  | |||||||||| || |||||||||||| ||| |    
T  26501565 ctttgatttctttcattccaaataacccaaatgcaacatagccaaatcaaatgtagaaaagatcgacgtggagcataaccacctgaagaataaataaatt 26501664  T
Q  140 gat 142  Q
    |||    
T  26501665 gat 26501667  T

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Target: chr5; HSP #4
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 46 - 110
Target Start/End: Original strand, 2681465 - 2681529
Alignment:
Q  46 tttctttcattccaaagaactcaaataccacagagccaaatcaaatgaagaaaagaccttcttgg 110  Q
    ||||||||||||||||||||  |||||||| | |||||| ||||||||||||| |||||||||||    
T  2681465 tttctttcattccaaagaacctaaataccatatagccaattcaaatgaagaaaggaccttcttgg 2681529  T

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Target: chr5; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 39 - 173
Target Start/End: Original strand, 10468959 - 10469093
Alignment:
Q  39 tcttttatttctttcattccaaagaactcaaataccacagagccaaatcaaatgaagaaaagaccttcttggagcataatcatctgaagaataaacaaac 138  Q
    ||||| ||| |||||||| |||| ||| ||||| | ||| |||||||||||||| |||||||| |  |  ||||||||| || ||||||| |||| |||     
T  10468959 tctttgattcctttcatttcaaataacccaaatgcaacatagccaaatcaaatgtagaaaagatcgacgaggagcataaccacctgaagagtaaataaat 10469058  T
Q  139 tgataataatggtccaaaacctgatgaggatccac 173  Q
    ||||   |||| |||  ||||||||||||||||||    
T  10469059 tgatggaaatgatccgtaacctgatgaggatccac 10469093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 18 - 50
Target Start/End: Original strand, 3417679 - 3417711
Alignment:
Q  18 tttagctgtgttgacaaacaatcttttatttct 50  Q
    |||||||||||||||||||||||||||||||||    
T  3417679 tttagctgtgttgacaaacaatcttttatttct 3417711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 39 - 103
Target Start/End: Complemental strand, 28639163 - 28639099
Alignment:
Q  39 tcttttatttctttcattccaaagaactcaaataccacagagccaaatcaaatgaagaaaagacc 103  Q
    ||||| ||||||||||||||| | ||| ||||| | ||| |||||||||||||| ||||| ||||    
T  28639163 tctttgatttctttcattccagataacccaaatgcaacatagccaaatcaaatgtagaaacgacc 28639099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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