View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1706_high_16 (Length: 441)
Name: NF1706_high_16
Description: NF1706
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1706_high_16 |
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Alignment Details
Target: chr1 (Bit Score: 329; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 329; E-Value: 0
Query Start/End: Original strand, 17 - 431
Target Start/End: Complemental strand, 8778260 - 8777847
Alignment:
| Q |
17 |
atttaatacacatggaaattttatttcgaatcacttagatttttggtccatgcgagtatttgaaaatcgtttgaaatttttattaagaatagaggttggc |
116 |
Q |
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| T |
8778260 |
atttaatacacatggaaattttatttcgaatcacttagatttttggtccatgcgagtatttgagaatcgtttgaaatttttattaagaatagaggttggc |
8778161 |
T |
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| Q |
117 |
ttcttaatgaagttcatcttcgttcttatgaaagagatggtgatttagtcgatgtcagttccacaaaaataacggtgtttcagaagaaacgg-nnnnnnn |
215 |
Q |
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| T |
8778160 |
ttcttaatgaagttcatcttcgttcttatgaaagagatggtgatttagttgatgtcagttccacaaaaataatggtgtttcagaagaaacggaaaaaaaa |
8778061 |
T |
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| Q |
216 |
ntgataatcaaggaattggaaataaaaagcaaacactaatacatggttttcttactcagagctaacaatgaagaagtaacattaattttcagctactgca |
315 |
Q |
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| T |
8778060 |
atgataatcaaggaactggaaataaaaagcaaacactaatacatggttttcttactc--agctaataatgaagaagtaactttaattttcagctactgca |
8777963 |
T |
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| Q |
316 |
tactgtgtcataattcagtgataagtttaactgtacataaaaacattccctatgcaatgcatattcaaaaaccattagttccaaatcatagatataagag |
415 |
Q |
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| T |
8777962 |
tattgtgtcataattcagtgatatgtttaactgtacataaaaacattgcctatgcaatgcagattcaaaaaccattagttccaaatcatagatataagag |
8777863 |
T |
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| Q |
416 |
ataccatttttatatt |
431 |
Q |
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| T |
8777862 |
atgccatttttatatt |
8777847 |
T |
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Target: chr2 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 288 - 354
Target Start/End: Original strand, 2539789 - 2539857
Alignment:
| Q |
288 |
gaagtaacattaattttcagctactgcatactgtgtcataa--ttcagtgataagtttaactgtacata |
354 |
Q |
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| T |
2539789 |
gaagtaactttaactttcagctactgcatacattgtcatatagttcagtgataagtttaactgtacata |
2539857 |
T |
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