View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1706_high_18 (Length: 400)

Name: NF1706_high_18
Description: NF1706
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1706_high_18
NF1706_high_18
[»] scaffold0009 (3 HSPs)
scaffold0009 (2-390)||(39798-40186)
scaffold0009 (8-390)||(33183-33559)
scaffold0009 (8-307)||(21530-21826)
[»] chr5 (1 HSPs)
chr5 (278-382)||(19970209-19970313)


Alignment Details
Target: scaffold0009 (Bit Score: 337; Significance: 0; HSPs: 3)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 337; E-Value: 0
Query Start/End: Original strand, 2 - 390
Target Start/End: Original strand, 39798 - 40186
Alignment:
Q  2 aagaggtggttcctactgttctactcgctcgcagttattggcatcagcgatagcaaagcctacacaaaaaaggcttgggttcactttcgtagattcgtgg 101  Q
    |||||||||||| || ||||||||||||||||||||||| |||| ||||||| | |||||||||| ||||||||||||||||||||| | ||||||||||    
T  39798 aagaggtggttcttattgttctactcgctcgcagttattagcataagcgataacgaagcctacacgaaaaaggcttgggttcacttttgcagattcgtgg 39897  T
Q  102 acacaattctactctccacacacgcgcgagaacaaactcttaaaacatttcatcttgactgccgatctaaaaactggagacctaatagttttatttgttt 201  Q
    ||||| ||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39898 acacagttctactctccacacacgcggaagaacaaactcttaaaacatttcatcttgactgccgatctaaaaactggagacctaatagttttatttgttt 39997  T
Q  202 tgacacatgggttgaagcagcaaaacaacgcggtgttgaggatctctatctatgcatgttacaagtgatgttgtcacctaccattttcgtgtgtgaaaca 301  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39998 tgacacatgggttgaagcagcaaaacgacgcggtgttgaggatctctatctatgcatgttacaagtgatgttgtcacctaccattttcgtgtgtgaaaca 40097  T
Q  302 cttgtggtcctcaaattggatagattaaatgtaccctctatgtctcgcttttcggttgatcttccttcgcttaaaacccttgatctgtg 390  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40098 cttgtggtcctcaaattggatagattaaatgtaccctctatgtctcgcttttcggttgatcttccttcgcttaaaacccttgatctgtg 40186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0009; HSP #2
Raw Score: 168; E-Value: 6e-90
Query Start/End: Original strand, 8 - 390
Target Start/End: Original strand, 33183 - 33559
Alignment:
Q  8 tggttcctactgttctactcgctcgcagttattggcatcagcgatagcaaagcctacacaaaaaaggcttgggttcactttcgtagattcgtggacacaa 107  Q
    ||||||| | |||| |||||||| ||||||||| | ||| |||||| ||||| ||||||||||||||||||||||||||||||| |||| ||| ||||      
T  33183 tggttcccattgttttactcgcttgcagttattcgtatctgcgataacaaagtctacacaaaaaaggcttgggttcactttcgtcgatttgtgaacacgg 33282  T
Q  108 ttctactctccacacacgcgcgagaacaaactcttaaaacatttcatcttgactgccgatctaaaaactggagacctaatagttttatttgttttgacac 207  Q
    || || |||||| |||||| | |||||||||||||||||  |||||||| | ||||| ||||||||| |||||| |||||||||||  ||||||||||||    
T  33283 ttttaatctccaaacacgcacaagaacaaactcttaaaaagtttcatctcgtctgccaatctaaaaattggagagctaatagttttcgttgttttgacac 33382  T
Q  208 atgggttgaagcagcaaaacaacgcggtgttgaggatctctatctatgcatgttacaagtgatgttgtcacctaccattttcgtgtgtgaaacacttgtg 307  Q
    ||||||| |||||||||||| ||| || || ||||||||||||||||||||| || ||||||  ||||| ||||||||||||||||||||||||||||||    
T  33383 atgggttaaagcagcaaaacgacgtggggtcgaggatctctatctatgcatggtagaagtgaccttgtcgcctaccattttcgtgtgtgaaacacttgtg 33482  T
Q  308 gtcctcaaattggatagattaaatgtaccctctatgtctcgcttttcggttgatcttccttcgcttaaaacccttgatctgtg 390  Q
    || ||||||||||||||| ||| ||||||       ||||| | ||| ||||||||||||| ||||||||| || ||||||||    
T  33483 gttctcaaattggatagaataattgtacc------atctcgttgttcagttgatcttcctttgcttaaaacgctcgatctgtg 33559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0009; HSP #3
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 8 - 307
Target Start/End: Original strand, 21530 - 21826
Alignment:
Q  8 tggttcctactgttctactcgctcgcagttattggcatcagcgatagcaaagcctacacaaaaaaggcttgggttcactttcgtagattcgtggacacaa 107  Q
    ||||||| |||||| ||||| |||||||||||| ||||  |||||| |  || |||||| ||||||||||||||| ||||||||||| | ||||||| |     
T  21530 tggttcccactgttttactctctcgcagttattcgcatatgcgataactgagtctacacgaaaaaggcttgggtttactttcgtagaattgtggacaaag 21629  T
Q  108 ttctactctccacacacgcgcgagaacaaactcttaaaacatttcatcttgactgccgatctaaaaactggagacctaatagttttatttgttttgacac 207  Q
    || |   ||||||||||||||    |||||||||||||||||||||||| ||||||| ||||||  | |||||| |||||||||||   |||||||||||    
T  21630 ttat---ctccacacacgcgcagctacaaactcttaaaacatttcatctcgactgccaatctaatcattggagagctaatagttttcgctgttttgacac 21726  T
Q  208 atgggttgaagcagcaaaacaacgcggtgttgaggatctctatctatgcatgttacaagtgatgttgtcacctaccattttcgtgtgtgaaacacttgtg 307  Q
    |||||| |||| |||||||| ||| || || |||||||||||||||  | ||||| ||||||  ||||| |||||||||||||| |||  ||||||||||    
T  21727 atgggtcgaagaagcaaaacgacgtggggtcgaggatctctatctaaacttgttagaagtgaccttgtcgcctaccattttcgtttgtagaacacttgtg 21826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 278 - 382
Target Start/End: Complemental strand, 19970313 - 19970209
Alignment:
Q  278 cctaccattttcgtgtgtgaaacacttgtggtcctcaaattggatagattaaatgtaccctctatgtctcgcttttcggttgatcttccttcgcttaaaa 377  Q
    ||||||||||||   ||||||||||||||||| || ||||||  |||  || ||||| |  |||||| ||| | ||| ||||||||||||||||| ||||    
T  19970313 cctaccattttctgctgtgaaacacttgtggttctgaaattgtttagcatacatgtaacaactatgtttcgttcttctgttgatcttccttcgctcaaaa 19970214  T
Q  378 ccctt 382  Q
    |||||    
T  19970213 ccctt 19970209  T

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