View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1706_high_19 (Length: 398)

Name: NF1706_high_19
Description: NF1706
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1706_high_19
NF1706_high_19
[»] chr2 (1 HSPs)
chr2 (89-382)||(7149741-7150032)


Alignment Details
Target: chr2 (Bit Score: 249; Significance: 1e-138; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 89 - 382
Target Start/End: Complemental strand, 7150032 - 7149741
Alignment:
Q  89 caactagtagacatactaagattactctcaccaaaattacattcatggattatttatgcatacatctttattacaagttgatagtaaaataagatgattg 188  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7150032 caactagtagacatactaagattactctcaccaaaattacattcatggattatttatgcatacatctttattacaagttgatagtaaaataagatgattg 7149933  T
Q  189 acacatataattgaactttccacttacatcattaacattatatgagacattctcctctaatctaaattacttttagtaactaaatgatttgagtttgttt 288  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  7149932 acacatataattgaactttccacttacatcattaacattatatgagacattctcctctaatctaaattacgtttagtaactaaatgatttgagtttgttt 7149833  T
Q  289 tagtnnnnnnntaaatcatatatgtttcaattgtattgtatgactattaaatataatattctctttaagttaaattctaaagttgaatcgttat 382  Q
    ||||        ||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||    
T  7149832 tagtaaaaaa--aaatcatatatgtgtcaattgtattgtatgactattaaatattatattctctttaagttaaattctaaagttgaatcattat 7149741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University