View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1706_high_20 (Length: 395)

Name: NF1706_high_20
Description: NF1706
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1706_high_20
NF1706_high_20
[»] chr1 (10 HSPs)
chr1 (201-364)||(1692543-1692707)
chr1 (59-192)||(1692379-1692512)
chr1 (299-373)||(2542753-2542828)
chr1 (295-374)||(34437610-34437689)
chr1 (299-374)||(38663663-38663739)
chr1 (332-374)||(49822613-49822655)
chr1 (299-374)||(31970171-31970247)
chr1 (328-374)||(34437678-34437724)
chr1 (295-372)||(40668943-40669021)
chr1 (300-372)||(23317923-23317996)
[»] chr4 (11 HSPs)
chr4 (299-372)||(16457934-16458008)
chr4 (299-374)||(21433924-21434000)
chr4 (299-374)||(33414015-33414091)
chr4 (301-374)||(15134579-15134653)
chr4 (295-373)||(19382310-19382384)
chr4 (304-365)||(2247635-2247697)
chr4 (304-357)||(45654067-45654121)
chr4 (299-365)||(2324779-2324846)
chr4 (304-365)||(1338452-1338514)
chr4 (328-374)||(32286312-32286358)
chr4 (91-139)||(35489637-35489685)
[»] chr7 (12 HSPs)
chr7 (295-374)||(49106953-49107032)
chr7 (299-373)||(12275789-12275864)
chr7 (328-374)||(2276289-2276335)
chr7 (298-372)||(2276327-2276402)
chr7 (299-373)||(11201306-11201381)
chr7 (291-357)||(40134429-40134496)
chr7 (296-372)||(18089750-18089827)
chr7 (301-365)||(26862966-26863031)
chr7 (324-371)||(29356932-29356979)
chr7 (299-363)||(47497751-47497816)
chr7 (326-374)||(10056635-10056683)
chr7 (323-363)||(24516579-24516619)
[»] chr5 (6 HSPs)
chr5 (299-373)||(3907705-3907780)
chr5 (332-373)||(4190072-4190113)
chr5 (329-365)||(35244861-35244897)
chr5 (299-372)||(25545269-25545343)
chr5 (297-364)||(3771215-3771283)
chr5 (300-371)||(41169405-41169477)
[»] chr8 (12 HSPs)
chr8 (299-374)||(42072672-42072748)
chr8 (303-373)||(13260405-13260476)
chr8 (300-357)||(40175946-40176004)
chr8 (299-371)||(26018511-26018584)
chr8 (305-365)||(20271027-20271090)
chr8 (305-365)||(21057655-21057718)
chr8 (297-354)||(2478467-2478525)
chr8 (301-374)||(34504430-34504504)
chr8 (339-373)||(40696280-40696314)
chr8 (299-371)||(35586419-35586491)
chr8 (302-374)||(38835012-38835085)
chr8 (299-374)||(40694664-40694740)
[»] chr2 (8 HSPs)
chr2 (299-374)||(42094254-42094329)
chr2 (300-357)||(1469791-1469849)
chr2 (302-371)||(44486987-44487056)
chr2 (299-374)||(25666849-25666925)
chr2 (299-362)||(37810197-37810261)
chr2 (301-363)||(44487176-44487238)
chr2 (299-374)||(18719743-18719819)
chr2 (300-371)||(42251178-42251250)
[»] chr6 (8 HSPs)
chr6 (299-357)||(11650918-11650977)
chr6 (300-363)||(6643367-6643431)
chr6 (318-357)||(28865439-28865478)
chr6 (296-365)||(4483387-4483457)
chr6 (301-357)||(3150238-3150295)
chr6 (318-374)||(1473627-1473683)
chr6 (339-375)||(12731565-12731601)
chr6 (338-374)||(34093903-34093939)
[»] chr3 (10 HSPs)
chr3 (323-374)||(3901511-3901562)
chr3 (323-374)||(3901569-3901620)
chr3 (299-353)||(14345202-14345257)
chr3 (299-365)||(36480758-36480825)
chr3 (299-372)||(11532486-11532560)
chr3 (304-366)||(46492590-46492652)
chr3 (300-371)||(35357369-35357441)
chr3 (299-373)||(31205382-31205457)
chr3 (296-372)||(13540190-13540267)
chr3 (299-374)||(32881009-32881085)
[»] scaffold0620 (1 HSPs)
scaffold0620 (338-374)||(9237-9273)


Alignment Details
Target: chr1 (Bit Score: 73; Significance: 3e-33; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 201 - 364
Target Start/End: Original strand, 1692543 - 1692707
Alignment:
Q  201 agcttttacgtgccagcagtgtgcagctggcagcccttaactaacaagctctaagtctaactaaactagacttgagttccttctctaataacaggggtcc 300  Q
    |||| ||| |||||||  |||| ||||||||| |||||||||||| || |||||||||||||||||||||||| |||| |||||||||||| |||||||     
T  1692543 agctgttaagtgccagttgtgtccagctggcatcccttaactaactagttctaagtctaactaaactagacttaagtttcttctctaataataggggtct 1692642  T
Q  301 caccaaatttatatggg-cccagatgaattggtgggatccatgtgaattttaaccaatgaaagag 364  Q
    |||||||||||||||||  ||  |||| || ||| |||||  |||||| ||||||||||||||||    
T  1692643 caccaaatttatatgggatccgcatgatttagtgcgatccgagtgaatattaaccaatgaaagag 1692707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 59 - 192
Target Start/End: Original strand, 1692379 - 1692512
Alignment:
Q  59 tgtaatattcagagagaatttcataactaaggtttggtctaaaattctgtttctcattaattgatcaaattcagttacaatcaagcatttatagtagcct 158  Q
    ||||| |||||||||||||| |||||||||  |||| |||||||||||||||   | ||||||||  || |||||||||||||||||| |||||||||||    
T  1692379 tgtaaaattcagagagaattgcataactaacttttgatctaaaattctgttttaaaataattgattgaaatcagttacaatcaagcatgtatagtagcct 1692478  T
Q  159 gaagagtta-cctactataaaaggttgatctatgg 192  Q
    ||| ||||| ||  |||||| ||||||||||||||    
T  1692479 gaa-agttacccggctataacaggttgatctatgg 1692512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 299 - 373
Target Start/End: Original strand, 2542753 - 2542828
Alignment:
Q  299 cccaccaaatttatatggg-cccagatgaattggtgggatccatgtgaattttaaccaatgaaagagattgtgttg 373  Q
    ||||||||||||||||||  |||| |||| ||||||| | |||||||||||||||||||| ||||||| |||||||    
T  2542753 cccaccaaatttatatggaacccacatgatttggtggaagccatgtgaattttaaccaatcaaagagaatgtgttg 2542828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 295 - 374
Target Start/End: Complemental strand, 34437689 - 34437610
Alignment:
Q  295 gggtcccaccaaatttatatggg-cccagatgaattggtgggatccatgtgaattttaaccaatgaaagagattgtgttga 374  Q
    ||||||| ||||||| ||||||| |||| |||| ||||||||| |||||||||||||||||||| ||||||| | ||||||    
T  34437689 gggtccccccaaatt-atatgggtcccacatgatttggtgggacccatgtgaattttaaccaatcaaagagagtttgttga 34437610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 299 - 374
Target Start/End: Complemental strand, 38663739 - 38663663
Alignment:
Q  299 cccaccaaatttatat-gggcccagatgaattggtgggatccatgtgaattttaaccaatgaaagagattgtgttga 374  Q
    |||||||||||||||| || |||| |||| ||||||||| | ||||||||| |||||||| ||||||| ||||||||    
T  38663739 cccaccaaatttatataggacccatatgatttggtgggacctatgtgaattgtaaccaatcaaagagagtgtgttga 38663663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 332 - 374
Target Start/End: Original strand, 49822613 - 49822655
Alignment:
Q  332 tgggatccatgtgaattttaaccaatgaaagagattgtgttga 374  Q
    |||||||||||||||||||||||||| ||||||| ||||||||    
T  49822613 tgggatccatgtgaattttaaccaatcaaagagagtgtgttga 49822655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 299 - 374
Target Start/End: Original strand, 31970171 - 31970247
Alignment:
Q  299 cccaccaaatttatatggg-cccagatgaattggtgggatccatgtgaattttaaccaatgaaagagattgtgttga 374  Q
    ||||||||||||||||||| |||| |||| ||||||||| |||| |||| ||||| |||| ||| ||| ||||||||    
T  31970171 cccaccaaatttatatgggacccacatgatttggtgggacccatatgaaatttaatcaattaaaaagagtgtgttga 31970247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 328 - 374
Target Start/End: Original strand, 34437678 - 34437724
Alignment:
Q  328 ttggtgggatccatgtgaattttaaccaatgaaagagattgtgttga 374  Q
    |||| |||| |||||||||||||||||||| ||||||| ||||||||    
T  34437678 ttggggggacccatgtgaattttaaccaatcaaagagagtgtgttga 34437724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 295 - 372
Target Start/End: Complemental strand, 40669021 - 40668943
Alignment:
Q  295 gggtcccaccaaatttatatggg-cccagatgaattggtgggatccatgtgaattttaaccaatgaaagagattgtgtt 372  Q
    |||| |||||||||||||||||| |||| || | || ||| || |||||||| ||||||||||| ||||||| ||||||    
T  40669021 gggttccaccaaatttatatgggtcccacataattttgtgagacccatgtgagttttaaccaatcaaagagagtgtgtt 40668943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 300 - 372
Target Start/End: Complemental strand, 23317996 - 23317923
Alignment:
Q  300 ccaccaaatttatatggg-cccagatgaattggtgggatccatgtgaattttaaccaatgaaagagattgtgtt 372  Q
    |||| ||||||||||||| |||| |||| ||||||||| | |||||||||||||| ||| |||| || ||||||    
T  23317996 ccactaaatttatatgggacccacatgatttggtgggacctatgtgaattttaacaaattaaagggagtgtgtt 23317923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 47; Significance: 1e-17; HSPs: 11)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 299 - 372
Target Start/End: Complemental strand, 16458008 - 16457934
Alignment:
Q  299 cccaccaaatttatatggg-cccagatgaattggtgggatccatgtgaattttaaccaatgaaagagattgtgtt 372  Q
    ||||||||||||||||||| |||| |||| ||| |||||||||||||||||||||||||| ||||||| ||||||    
T  16458008 cccaccaaatttatatgggacccacatgatttgatgggatccatgtgaattttaaccaatcaaagagagtgtgtt 16457934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 299 - 374
Target Start/End: Original strand, 21433924 - 21434000
Alignment:
Q  299 cccaccaaatttatatggg-cccagatgaattggtgggatccatgtgaattttaaccaatgaaagagattgtgttga 374  Q
    ||||||||||||||||| | |||| |||| |||||||||||||||||||||||||||||| || |||| ||||||||    
T  21433924 cccaccaaatttatatgagacccacatgatttggtgggatccatgtgaattttaaccaatcaatgagagtgtgttga 21434000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 299 - 374
Target Start/End: Complemental strand, 33414091 - 33414015
Alignment:
Q  299 cccaccaaatttatatggg-cccagatgaattggtgggatccatgtgaattttaaccaatgaaagagattgtgttga 374  Q
    |||||||||||||||| || ||||  ||| |||||||||||||||||||||||||||||| ||||||| ||||||||    
T  33414091 cccaccaaatttatataggacccacgtgatttggtgggatccatgtgaattttaaccaatcaaagagagtgtgttga 33414015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 301 - 374
Target Start/End: Complemental strand, 15134653 - 15134579
Alignment:
Q  301 caccaaatttatatggg-cccagatgaattggtgggatccatgtgaattttaaccaatgaaagagattgtgttga 374  Q
    ||||||||||||||||| |||| |||| || || ||| |||||||||||||||||||| ||||||| ||||||||    
T  15134653 caccaaatttatatgggacccaaatgatttagtcggacccatgtgaattttaaccaataaaagagaatgtgttga 15134579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 295 - 373
Target Start/End: Complemental strand, 19382384 - 19382310
Alignment:
Q  295 gggtcccaccaaatttatatgggcccagatgaattggtgggatccatgtgaattttaaccaatgaaagagattgtgttg 373  Q
    ||||||| |||||||||||    |||| |||| |||||||||||||||||||||||||||||| ||| ||| |||||||    
T  19382384 gggtcccgccaaatttata----cccacatgatttggtgggatccatgtgaattttaaccaatcaaatagagtgtgttg 19382310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 304 - 365
Target Start/End: Original strand, 2247635 - 2247697
Alignment:
Q  304 caaatttatatggg-cccagatgaattggtgggatccatgtgaattttaaccaatgaaagaga 365  Q
    |||||||||||| | |||| |||| |||||||||||||||| ||||||||||||| |||||||    
T  2247635 caaatttatatgcgacccacatgatttggtgggatccatgttaattttaaccaatcaaagaga 2247697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 304 - 357
Target Start/End: Original strand, 45654067 - 45654121
Alignment:
Q  304 caaatttatatggg-cccagatgaattggtgggatccatgtgaattttaaccaat 357  Q
    |||||||||||||| |||| |||| ||| ||||||||||||||||||||||||||    
T  45654067 caaatttatatgggacccacatgatttgatgggatccatgtgaattttaaccaat 45654121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 299 - 365
Target Start/End: Complemental strand, 2324846 - 2324779
Alignment:
Q  299 cccaccaaatttatatggg-cccagatgaattggtgggatccatgtgaattttaaccaatgaaagaga 365  Q
    ||||||||||||||||||| |||| |||| ||||||  |  ||||||||||||||||||| |||||||    
T  2324846 cccaccaaatttatatgggacccacatgatttggtgaaactcatgtgaattttaaccaatcaaagaga 2324779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 304 - 365
Target Start/End: Complemental strand, 1338514 - 1338452
Alignment:
Q  304 caaatttatatggg-cccagatgaattggtgggatccatgtgaattttaaccaatgaaagaga 365  Q
    |||||||||||||| |||| |  | |||||||||||||||||| ||||||||||| |||||||    
T  1338514 caaatttatatgggtcccatacaatttggtgggatccatgtgatttttaaccaatcaaagaga 1338452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 328 - 374
Target Start/End: Original strand, 32286312 - 32286358
Alignment:
Q  328 ttggtgggatccatgtgaattttaaccaatgaaagagattgtgttga 374  Q
    ||||| |||||||||||||||||||||||| ||| ||| ||||||||    
T  32286312 ttggttggatccatgtgaattttaaccaataaaaaagagtgtgttga 32286358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 91 - 139
Target Start/End: Complemental strand, 35489685 - 35489637
Alignment:
Q  91 tttggtctaaaattctgtttctcattaattgatcaaattcagttacaat 139  Q
    |||||||||||||||||||| || || |||||| |||||| ||||||||    
T  35489685 tttggtctaaaattctgtttttccttgattgattaaattctgttacaat 35489637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 44; Significance: 6e-16; HSPs: 12)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 295 - 374
Target Start/End: Original strand, 49106953 - 49107032
Alignment:
Q  295 gggtcccaccaaatttatatgggcccagatgaattggtgggatccatgtgaattttaaccaatgaaagagattgtgttga 374  Q
    |||||| ||||||||||||||| |||  |||| ||||||||| | |||||||||||||||||| ||||||| ||||||||    
T  49106953 gggtcctaccaaatttatatggtcccgcatgatttggtgggacctatgtgaattttaaccaatcaaagagagtgtgttga 49107032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 299 - 373
Target Start/End: Original strand, 12275789 - 12275864
Alignment:
Q  299 cccaccaaatttatatggg-cccagatgaattggtgggatccatgtgaattttaaccaatgaaagagattgtgttg 373  Q
    ||||||||||||||||||| |||| |||| ||||||||| |||| |||||||||||||||  |||||| |||||||    
T  12275789 cccaccaaatttatatgggacccacatgatttggtgggacccatatgaattttaaccaatcgaagagagtgtgttg 12275864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 328 - 374
Target Start/End: Complemental strand, 2276335 - 2276289
Alignment:
Q  328 ttggtgggatccatgtgaattttaaccaatgaaagagattgtgttga 374  Q
    |||||||||||||||||||||||||||||| ||||||| ||||||||    
T  2276335 ttggtgggatccatgtgaattttaaccaatcaaagagagtgtgttga 2276289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 298 - 372
Target Start/End: Original strand, 2276327 - 2276402
Alignment:
Q  298 tcccaccaaatttatatggg-cccagatgaattggtgggatccatgtgaattttaaccaatgaaagagattgtgtt 372  Q
    |||||||||||||||| ||| |||| || | |||||||||| ||||||||||||||||||| ||||| | ||||||    
T  2276327 tcccaccaaatttataagggacccacataatttggtgggattcatgtgaattttaaccaattaaagatagtgtgtt 2276402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 299 - 373
Target Start/End: Complemental strand, 11201381 - 11201306
Alignment:
Q  299 cccaccaaatttatatggg-cccagatgaattggtgggatccatgtgaattttaaccaatgaaagagattgtgttg 373  Q
    |||| |||||||||||| | ||||  ||| ||||||||| |||||||||||||||| ||||||||||| |||||||    
T  11201381 cccatcaaatttatatgagacccacgtgatttggtgggacccatgtgaattttaactaatgaaagagagtgtgttg 11201306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 291 - 357
Target Start/End: Original strand, 40134429 - 40134496
Alignment:
Q  291 acaggggtcccaccaaatttatatggg-cccagatgaattggtgggatccatgtgaattttaaccaat 357  Q
    ||||||| || |||||||||||||||| |||| || | ||||||||| ||||||||||||||||||||    
T  40134429 acaggggacctaccaaatttatatgggacccacataatttggtgggacccatgtgaattttaaccaat 40134496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 296 - 372
Target Start/End: Original strand, 18089750 - 18089827
Alignment:
Q  296 ggtcccaccaaatttatatgggc-ccagatgaattggtgggatccatgtgaattttaaccaatgaaagagattgtgtt 372  Q
    ||||||||||||||||||||||  ||| || | ||||| ||| |||||||||||||||||||  ||||||| ||||||    
T  18089750 ggtcccaccaaatttatatgggttccacataatttggttggacccatgtgaattttaaccaaccaaagagagtgtgtt 18089827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 301 - 365
Target Start/End: Original strand, 26862966 - 26863031
Alignment:
Q  301 caccaaatttatatggg-cccagatgaattggtgggatccatgtgaattttaaccaatgaaagaga 365  Q
    ||||| |||||||| || |||| |||| ||||||||| |||||||||||||||||||| |||||||    
T  26862966 caccatatttatataggacccacatgatttggtgggacccatgtgaattttaaccaattaaagaga 26863031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 324 - 371
Target Start/End: Complemental strand, 29356979 - 29356932
Alignment:
Q  324 tgaattggtgggatccatgtgaattttaaccaatgaaagagattgtgt 371  Q
    ||||||||||| | |||||||||||||||||||| ||||||| |||||    
T  29356979 tgaattggtggaacccatgtgaattttaaccaatcaaagagagtgtgt 29356932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 299 - 363
Target Start/End: Original strand, 47497751 - 47497816
Alignment:
Q  299 cccaccaaatttatatggg-cccagatgaattggtgggatccatgtgaattttaaccaatgaaaga 363  Q
    |||||||||||| |||||| |||| || | |||||||||  ||||||||||||||||||| |||||    
T  47497751 cccaccaaatttgtatgggacccacataatttggtgggactcatgtgaattttaaccaatcaaaga 47497816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 326 - 374
Target Start/End: Complemental strand, 10056683 - 10056635
Alignment:
Q  326 aattggtgggatccatgtgaattttaaccaatgaaagagattgtgttga 374  Q
    |||||||||| |||||||||||||| |||||| ||| ||| ||||||||    
T  10056683 aattggtgggttccatgtgaattttgaccaatcaaaaagagtgtgttga 10056635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 323 - 363
Target Start/End: Complemental strand, 24516619 - 24516579
Alignment:
Q  323 atgaattggtgggatccatgtgaattttaaccaatgaaaga 363  Q
    |||| ||||||||| |||||||||||||||||||| |||||    
T  24516619 atgatttggtgggacccatgtgaattttaaccaatcaaaga 24516579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 44; Significance: 6e-16; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 299 - 373
Target Start/End: Original strand, 3907705 - 3907780
Alignment:
Q  299 cccaccaaatttatatggg-cccagatgaattggtgggatccatgtgaattttaaccaatgaaagagattgtgttg 373  Q
    ||||||||||||||||||| |||| |||| ||||||||| |||||||||||||||||||| ||| ||| |||||||    
T  3907705 cccaccaaatttatatgggacccacatgatttggtgggacccatgtgaattttaaccaatcaaaaagaatgtgttg 3907780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 332 - 373
Target Start/End: Complemental strand, 4190113 - 4190072
Alignment:
Q  332 tgggatccatgtgaattttaaccaatgaaagagattgtgttg 373  Q
    |||||||||||||||||||||||||| ||||||| |||||||    
T  4190113 tgggatccatgtgaattttaaccaatcaaagagagtgtgttg 4190072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 329 - 365
Target Start/End: Complemental strand, 35244897 - 35244861
Alignment:
Q  329 tggtgggatccatgtgaattttaaccaatgaaagaga 365  Q
    ||||||||||||||||||||||||||||| |||||||    
T  35244897 tggtgggatccatgtgaattttaaccaatcaaagaga 35244861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 299 - 372
Target Start/End: Original strand, 25545269 - 25545343
Alignment:
Q  299 cccaccaaatttatatgggccc-agatgaattggtgggatccatgtgaattttaaccaatgaaagagattgtgtt 372  Q
    ||||| ||||||||||||| || | |||| |||||||||  || |||||||||||||||| ||||||| ||||||    
T  25545269 cccactaaatttatatgggaccgacatgatttggtgggactcacgtgaattttaaccaatcaaagagagtgtgtt 25545343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 297 - 364
Target Start/End: Original strand, 3771215 - 3771283
Alignment:
Q  297 gtcccaccaaatttatatgggcccag-atgaattggtgggatccatgtgaattttaaccaatgaaagag 364  Q
    ||||| ||||||||||||||| || | |||| ||||||| | | |||||||||||||||||| ||||||    
T  3771215 gtccctccaaatttatatgggtcccgcatgatttggtggaaccaatgtgaattttaaccaatcaaagag 3771283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 300 - 371
Target Start/End: Complemental strand, 41169477 - 41169405
Alignment:
Q  300 ccaccaaatttatatgggcccag-atgaattggtgggatccatgtgaattttaaccaatgaaagagattgtgt 371  Q
    |||||||||||||||||| |  | |||| ||||||| |||||||||||||| ||||||| ||| ||| |||||    
T  41169477 ccaccaaatttatatgggactcgcatgatttggtggaatccatgtgaatttcaaccaatcaaatagagtgtgt 41169405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 12)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 299 - 374
Target Start/End: Complemental strand, 42072748 - 42072672
Alignment:
Q  299 cccaccaaatttatatg-ggcccagatgaattggtgggatccatgtgaattttaaccaatgaaagagattgtgttga 374  Q
    ||||||||||||||||| | |||| |||| ||||||||| |||||||||| ||||||||| ||||||| ||||||||    
T  42072748 cccaccaaatttatatgagacccatatgatttggtgggacccatgtgaatgttaaccaatcaaagagagtgtgttga 42072672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 303 - 373
Target Start/End: Complemental strand, 13260476 - 13260405
Alignment:
Q  303 ccaaatttatatggg-cccagatgaattggtgggatccatgtgaattttaaccaatgaaagagattgtgttg 373  Q
    ||||||||||||||| |||| |||| ||||||||| ||||||| |||||||||||| ||||| | |||||||    
T  13260476 ccaaatttatatgggacccacatgagttggtgggacccatgtgcattttaaccaataaaagatagtgtgttg 13260405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 300 - 357
Target Start/End: Original strand, 40175946 - 40176004
Alignment:
Q  300 ccaccaaatttatatggg-cccagatgaattggtgggatccatgtgaattttaaccaat 357  Q
    |||||||||||||||||| |||| || | ||||||||| ||||||||||||||||||||    
T  40175946 ccaccaaatttatatgggacccacataatttggtgggacccatgtgaattttaaccaat 40176004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 299 - 371
Target Start/End: Original strand, 26018511 - 26018584
Alignment:
Q  299 cccaccaaatttatatggg-cccagatgaattggtgggatccatgtgaattttaaccaatgaaagagattgtgt 371  Q
    ||||||||||||||||||| |||| || | ||| ||||| |||||||||||||||||||| || |||| |||||    
T  26018511 cccaccaaatttatatgggacccacataatttgatgggacccatgtgaattttaaccaatcaaggagagtgtgt 26018584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 305 - 365
Target Start/End: Complemental strand, 20271090 - 20271027
Alignment:
Q  305 aaatttatatggg-cccagatgaattggtgggatccatgtgaa--ttttaaccaatgaaagaga 365  Q
    ||||||||||||| |||| |||| |||||||||||||||||||  ||||||||||| |||||||    
T  20271090 aaatttatatgggacccacatgatttggtgggatccatgtgaattttttaaccaatcaaagaga 20271027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 305 - 365
Target Start/End: Complemental strand, 21057718 - 21057655
Alignment:
Q  305 aaatttatatggg-cccagatgaattggtgggatccatgtgaa--ttttaaccaatgaaagaga 365  Q
    ||||||||||||| |||| |||| |||||||||||||||||||  ||||||||||| |||||||    
T  21057718 aaatttatatgggacccacatgatttggtgggatccatgtgaattttttaaccaatcaaagaga 21057655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 297 - 354
Target Start/End: Original strand, 2478467 - 2478525
Alignment:
Q  297 gtcccaccaaatttatatggg-cccagatgaattggtgggatccatgtgaattttaacc 354  Q
    ||||||||||| ||||||||| | ||||||| ||||||||| |||||| ||||||||||    
T  2478467 gtcccaccaaaattatatgggacacagatgatttggtgggacccatgtaaattttaacc 2478525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 301 - 374
Target Start/End: Original strand, 34504430 - 34504504
Alignment:
Q  301 caccaaatttatatggg-cccagatgaattggtgggatccatgtgaattttaaccaatgaaagagattgtgttga 374  Q
    ||||||||||||||||| |||| |||| |||||| || ||||| |||||||||||||| ||| | | ||||||||    
T  34504430 caccaaatttatatgggacccacatgatttggtgtgacccatgcgaattttaaccaatcaaaaaaagtgtgttga 34504504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 339 - 373
Target Start/End: Original strand, 40696280 - 40696314
Alignment:
Q  339 catgtgaattttaaccaatgaaagagattgtgttg 373  Q
    ||||| |||||||||||||||||||||||||||||    
T  40696280 catgttaattttaaccaatgaaagagattgtgttg 40696314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 299 - 371
Target Start/End: Complemental strand, 35586491 - 35586419
Alignment:
Q  299 cccaccaaatttatatgggcc-cagatgaattggtgggatccatgtgaattttaaccaatgaaagagattgtgt 371  Q
    ||||||||||||||||| | | || |||| ||||||||| || ||||||||||||||||| ||||||| |||||    
T  35586491 cccaccaaatttatatgagactcacatgatttggtggga-ccgtgtgaattttaaccaatcaaagagagtgtgt 35586419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 302 - 374
Target Start/End: Complemental strand, 38835085 - 38835012
Alignment:
Q  302 accaaatttatatgggcccag-atgaattggtgggatccatgtgaattttaaccaatgaaagagattgtgttga 374  Q
    |||||||||||||||| || | |||| |||||| || ||||||||||||||  |||| ||||||| ||||||||    
T  38835085 accaaatttatatgggacccgcatgatttggtgagacccatgtgaattttagtcaatcaaagagaatgtgttga 38835012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 299 - 374
Target Start/End: Original strand, 40694664 - 40694740
Alignment:
Q  299 cccaccaaatttatatggg-cccagatgaattggtgggatccatgtgaattttaaccaatgaaagagattgtgttga 374  Q
    |||||||||| ||||| || |||| |||| ||||||||| |||||||||||||||| ||| ||| ||| ||| ||||    
T  40694664 cccaccaaatctatataggacccacatgatttggtgggacccatgtgaattttaactaataaaaaagagtgtattga 40694740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 299 - 374
Target Start/End: Original strand, 42094254 - 42094329
Alignment:
Q  299 cccaccaaatttatatggg-cccagatgaattggtgggatccatgtgaattttaaccaatgaaagagattgtgttga 374  Q
    ||||||||||||||||||| |||| |||| ||||||||| |||||||||||||||||||| ||||||  ||||||||    
T  42094254 cccaccaaatttatatgggacccacatgatttggtggga-ccatgtgaattttaaccaatcaaagagtgtgtgttga 42094329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 300 - 357
Target Start/End: Original strand, 1469791 - 1469849
Alignment:
Q  300 ccaccaaatttatatggg-cccagatgaattggtgggatccatgtgaattttaaccaat 357  Q
    |||||||||||||||||| |||| |||| || |||||||||||||||||||||||||||    
T  1469791 ccaccaaatttatatgggacccacatgattttgtgggatccatgtgaattttaaccaat 1469849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 302 - 371
Target Start/End: Original strand, 44486987 - 44487056
Alignment:
Q  302 accaaatttatatgggcccagatgaattggtgggatccatgtgaattttaaccaatgaaagagattgtgt 371  Q
    |||||||||||||||||||| |||| || ||||||  |||| ||||| |||||||| ||||||| |||||    
T  44486987 accaaatttatatgggcccatatgatttagtgggactcatgcgaattgtaaccaatcaaagagagtgtgt 44487056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 299 - 374
Target Start/End: Original strand, 25666849 - 25666925
Alignment:
Q  299 cccaccaaatttatatgggccc-agatgaattggtgggatccatgtgaattttaaccaatgaaagagattgtgttga 374  Q
    ||||||||||||||||||  || | |||| ||||||||||||||||| ||||||||  || ||||||| ||||||||    
T  25666849 cccaccaaatttatatggaacctacatgatttggtgggatccatgtggattttaacacatcaaagagagtgtgttga 25666925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 299 - 362
Target Start/End: Original strand, 37810197 - 37810261
Alignment:
Q  299 cccaccaaatttatatggg-cccagatgaattggtgggatccatgtgaattttaaccaatgaaag 362  Q
    ||||||||||||||||||| ||||  | | ||||||||| |||||||||||||||||||| ||||    
T  37810197 cccaccaaatttatatgggacccatctaatttggtgggacccatgtgaattttaaccaatcaaag 37810261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 301 - 363
Target Start/End: Complemental strand, 44487238 - 44487176
Alignment:
Q  301 caccaaatttatatgggcccagatgaattggtgggatccatgtgaattttaaccaatgaaaga 363  Q
    |||||||||||| |||||  |||||| |||||| ||  ||||||||||||||||||| |||||    
T  44487238 caccaaatttatttgggcatagatgatttggtgagactcatgtgaattttaaccaatcaaaga 44487176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 299 - 374
Target Start/End: Complemental strand, 18719819 - 18719743
Alignment:
Q  299 cccaccaaatttatatggg-cccagatgaattggtgggatccatgtgaattttaaccaatgaaagagattgtgttga 374  Q
    |||| |||||||||||||| |||| |||| ||||||| |  | ||||||||||||||||| ||| ||| ||||||||    
T  18719819 cccatcaaatttatatgggacccacatgatttggtggaactcgtgtgaattttaaccaatcaaaaagagtgtgttga 18719743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 300 - 371
Target Start/End: Complemental strand, 42251250 - 42251178
Alignment:
Q  300 ccaccaaatttatatggg-cccagatgaattggtgggatccatgtgaattttaaccaatgaaagagattgtgt 371  Q
    ||||||||||||||| || |||| || | ||||||||| ||||| ||||||||||| || ||||||| |||||    
T  42251250 ccaccaaatttatataggtcccacataatttggtgggacccatgcgaattttaaccgatcaaagagagtgtgt 42251178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 299 - 357
Target Start/End: Complemental strand, 11650977 - 11650918
Alignment:
Q  299 cccaccaaatttatatggg-cccagatgaattggtgggatccatgtgaattttaaccaat 357  Q
    ||||||||||||||||||| |||| || | ||||||||||||||||||||||||||||||    
T  11650977 cccaccaaatttatatgggacccacataatttggtgggatccatgtgaattttaaccaat 11650918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 300 - 363
Target Start/End: Original strand, 6643367 - 6643431
Alignment:
Q  300 ccaccaaatttatatggg-cccagatgaattggtgggatccatgtgaattttaaccaatgaaaga 363  Q
    |||||||||||||||||| |||| |||| ||||||||| | || ||||||||||||||| |||||    
T  6643367 ccaccaaatttatatgggacccacatgatttggtgggacctatatgaattttaaccaatcaaaga 6643431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 318 - 357
Target Start/End: Complemental strand, 28865478 - 28865439
Alignment:
Q  318 cccagatgaattggtgggatccatgtgaattttaaccaat 357  Q
    |||| |||||||||||||| ||||||||||||||||||||    
T  28865478 cccacatgaattggtgggacccatgtgaattttaaccaat 28865439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 296 - 365
Target Start/End: Complemental strand, 4483457 - 4483387
Alignment:
Q  296 ggtcccaccaaatttatatggg-cccagatgaattggtgggatccatgtgaattttaaccaatgaaagaga 365  Q
    |||| ||||||||||||||||| |||| |||| ||||||||| || | | ||||||||||||| |||||||    
T  4483457 ggtcacaccaaatttatatgggtcccacatgatttggtgggacccgtattaattttaaccaatcaaagaga 4483387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 301 - 357
Target Start/End: Complemental strand, 3150295 - 3150238
Alignment:
Q  301 caccaaatttatatgggc-ccagatgaattggtgggatccatgtgaattttaaccaat 357  Q
    ||||||||||||||||   ||| |||| ||||||||| ||||||||||||||||||||    
T  3150295 caccaaatttatatggaatccacatgatttggtgggacccatgtgaattttaaccaat 3150238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 318 - 374
Target Start/End: Complemental strand, 1473683 - 1473627
Alignment:
Q  318 cccagatgaattggtgggatccatgtgaattttaaccaatgaaagagattgtgttga 374  Q
    |||| |||| ||||||| | |||||||||||||||||||| ||||| | ||||||||    
T  1473683 cccacatgatttggtggaacccatgtgaattttaaccaatcaaagatagtgtgttga 1473627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 339 - 375
Target Start/End: Complemental strand, 12731601 - 12731565
Alignment:
Q  339 catgtgaattttaaccaatgaaagagattgtgttgag 375  Q
    ||||||||||||||||||| ||||||| |||||||||    
T  12731601 catgtgaattttaaccaatcaaagagaatgtgttgag 12731565  T

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Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 338 - 374
Target Start/End: Original strand, 34093903 - 34093939
Alignment:
Q  338 ccatgtgaattttaaccaatgaaagagattgtgttga 374  Q
    |||||||||||||||||||| ||||||||| ||||||    
T  34093903 ccatgtgaattttaaccaatcaaagagattatgttga 34093939  T

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Target: chr3 (Bit Score: 36; Significance: 0.00000000004; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 323 - 374
Target Start/End: Complemental strand, 3901562 - 3901511
Alignment:
Q  323 atgaattggtgggatccatgtgaattttaaccaatgaaagagattgtgttga 374  Q
    |||| ||||||||| |||||||||||||||||||| ||||||| ||||||||    
T  3901562 atgatttggtgggacccatgtgaattttaaccaatcaaagagaatgtgttga 3901511  T

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Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 323 - 374
Target Start/End: Original strand, 3901569 - 3901620
Alignment:
Q  323 atgaattggtgggatccatgtgaattttaaccaatgaaagagattgtgttga 374  Q
    |||| ||||||||| |||||||||||||||||||| ||||||| ||||||||    
T  3901569 atgatttggtgggacccatgtgaattttaaccaatcaaagagagtgtgttga 3901620  T

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Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 299 - 353
Target Start/End: Original strand, 14345202 - 14345257
Alignment:
Q  299 cccaccaaatttatatggg-cccagatgaattggtgggatccatgtgaattttaac 353  Q
    ||||||||||||||||||| |||| |||| |||||||||| |||||||||||||||    
T  14345202 cccaccaaatttatatgggacccacatgatttggtgggattcatgtgaattttaac 14345257  T

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Target: chr3; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 299 - 365
Target Start/End: Original strand, 36480758 - 36480825
Alignment:
Q  299 cccaccaaatttatatggg-cccagatgaattggtgggatccatgtgaattttaaccaatgaaagaga 365  Q
    |||| |||||||||||||| |||| |||| ||||||||| |||||||||||||| ||||| |||||||    
T  36480758 cccaacaaatttatatgggacccacatgatttggtgggacccatgtgaattttagccaatcaaagaga 36480825  T

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Target: chr3; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 299 - 372
Target Start/End: Original strand, 11532486 - 11532560
Alignment:
Q  299 cccaccaaatttatatgggc-ccagatgaattggtgggatccatgtgaattttaaccaatgaaagagattgtgtt 372  Q
    ||||| |||||||||||||  ||| |||| ||||||| | |||||||||||||||||||| ||||||| ||||||    
T  11532486 cccactaaatttatatgggatccacatgatttggtggaacccatgtgaattttaaccaatcaaagagagtgtgtt 11532560  T

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Target: chr3; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 304 - 366
Target Start/End: Complemental strand, 46492652 - 46492590
Alignment:
Q  304 caaatttatatgggcccagatgaattggtgggatccatgtgaattttaaccaatgaaagagat 366  Q
    ||||||||||| |||||| || | ||||||||||| ||||||||||||| |||| ||||||||    
T  46492652 caaatttatataggcccacataatttggtgggatctatgtgaattttaatcaatcaaagagat 46492590  T

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Target: chr3; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 300 - 371
Target Start/End: Original strand, 35357369 - 35357441
Alignment:
Q  300 ccaccaaatttatatgggccc-agatgaattggtgggatccatgtgaattttaaccaatgaaagagattgtgt 371  Q
    |||||||||||||||||| |  | |||| ||||| ||| |||||||||||||||||||| ||||||| |||||    
T  35357369 ccaccaaatttatatgggacttacatgatttggtaggacccatgtgaattttaaccaatcaaagagagtgtgt 35357441  T

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Target: chr3; HSP #8
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 299 - 373
Target Start/End: Complemental strand, 31205457 - 31205382
Alignment:
Q  299 cccaccaaatttatatggg-cccagatgaattggtgggatccatgtgaattttaaccaatgaaagagattgtgttg 373  Q
    |||||||| |||||||||| |||| |||| |||||  || |||||| ||||||||||||| ||||||| |||||||    
T  31205457 cccaccaattttatatgggacccacatgatttggtaagacccatgtaaattttaaccaatcaaagagagtgtgttg 31205382  T

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Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 296 - 372
Target Start/End: Complemental strand, 13540267 - 13540190
Alignment:
Q  296 ggtcccaccaaatttatat-gggcccagatgaattggtgggatccatgtgaattttaaccaatgaaagagattgtgtt 372  Q
    ||||||||||||||||||| || | || |||| ||||||||| |||||| | ||| ||||||| ||||||| ||||||    
T  13540267 ggtcccaccaaatttatataggtctcacatgatttggtgggagccatgttagtttaaaccaatcaaagagagtgtgtt 13540190  T

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Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 299 - 374
Target Start/End: Complemental strand, 32881085 - 32881009
Alignment:
Q  299 cccaccaaatttatatggg-cccagatgaattggtgggatccatgtgaattttaaccaatgaaagagattgtgttga 374  Q
    |||||||||||||||||||  ||| |||| || |||||| |||||||||| ||||||||| || |||| | ||||||    
T  32881085 cccaccaaatttatatgggatccacatgattttgtgggacccatgtgaatattaaccaatcaaggagagtatgttga 32881009  T

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Target: scaffold0620 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0620
Description:

Target: scaffold0620; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 338 - 374
Target Start/End: Original strand, 9237 - 9273
Alignment:
Q  338 ccatgtgaattttaaccaatgaaagagattgtgttga 374  Q
    |||||||||||||||||||| ||||||||| ||||||    
T  9237 ccatgtgaattttaaccaatcaaagagattatgttga 9273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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