View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1706_high_28 (Length: 313)
Name: NF1706_high_28
Description: NF1706
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1706_high_28 |
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| [»] chr8 (5 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 293; Significance: 1e-164; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 293; E-Value: 1e-164
Query Start/End: Original strand, 17 - 313
Target Start/End: Original strand, 4123741 - 4124037
Alignment:
| Q |
17 |
agttccatcattgtcttgaacaaaatgccaaccgtgtaaatacttggttaacatactcggtgttccgagaaaaaccaatccattccatggaccagttctc |
116 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4123741 |
agttccatcattgtcttgaacaaaatgccaaccgtgtaaatacttggttaacatactcggtgttccgagaaaaaccaatccattccatggaccagttctc |
4123840 |
T |
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| Q |
117 |
caatgaattttcttatcataccaaatgaaaacttctggtgcatccaatctttcaagactagctgaataatgtcctgaagaaggatcattatcactttttc |
216 |
Q |
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| T |
4123841 |
caatgaattttcttatcataccaaatgaaaacttctggtgcatccaatctttcaagactagctgaataatgtcctgaagaaggatcattatcactttttc |
4123940 |
T |
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| Q |
217 |
ttgatacaaaggatattttcttacctgttacttggttagctgcaattctcattgttggaacagctgcatctgctgggtgtgtgaaactatcccagat |
313 |
Q |
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| T |
4123941 |
ttgatacaaaggatattttcttacctgttacttggttagctgcaattctcattgttggaacagctgcatctgcagggtgtgtgaaactatcccagat |
4124037 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 17 - 313
Target Start/End: Original strand, 4153091 - 4153387
Alignment:
| Q |
17 |
agttccatcattgtcttgaacaaaatgccaaccgtgtaaatacttggttaacatactcggtgttccgagaaaaaccaatccattccatggaccagttctc |
116 |
Q |
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|||||||||| |||||||| ||||| |||||||| |||||||| ||||||||| ||||||| ||||||||||||| ||||||||||||||| |||||| |
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| T |
4153091 |
agttccatcagtgtcttgatcaaaacgccaaccggctaaatactcggttaacattctcggtgatccgagaaaaacccttccattccatggacctgttctc |
4153190 |
T |
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| Q |
117 |
caatgaattttcttatcataccaaatgaaaacttctggtgcatccaatctttcaagactagctgaataatgtcctgaagaaggatcattatcactttttc |
216 |
Q |
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| T |
4153191 |
caatgaatatttttatctttccaaatgaaaacttctggtgcatccaatctttcaagactagctgaataatgtcctgaagaaggatcattatcactttttc |
4153290 |
T |
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| Q |
217 |
ttgatacaaaggatattttcttacctgttacttggttagctgcaattctcattgttggaacagctgcatctgctgggtgtgtgaaactatcccagat |
313 |
Q |
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| T |
4153291 |
ttgatacaaaggatattttcttacctgttacttggttagctgcaattctcattgttggaacagctgcatctgcagggtgtgtgaaactatcccagat |
4153387 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 174; E-Value: 1e-93
Query Start/End: Original strand, 17 - 310
Target Start/End: Original strand, 4163444 - 4163737
Alignment:
| Q |
17 |
agttccatcattgtcttgaacaaaatgccaaccgtgtaaatacttggttaacatactcggtgttccgagaaaaaccaatccattccatggaccagttctc |
116 |
Q |
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||||||||| ||||||||| ||||| |||||||| |||||||| ||||||||| ||||||| ||||||||||||| |||||||||||||||||||||| |
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| T |
4163444 |
agttccatctttgtcttgatcaaaacgccaaccggctaaatactcggttaacattctcggtgatccgagaaaaaccgttccattccatggaccagttctc |
4163543 |
T |
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| Q |
117 |
caatgaattttcttatcataccaaatgaaaacttctggtgcatccaatctttcaagactagctgaataatgtcctgaagaaggatcattatcactttttc |
216 |
Q |
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| T |
4163544 |
caatgaattctcttatcataccaaataaaaacttctggtgcatccaatctttcaagacttcctatataatgtcctgaagaaggatcattttcactttttc |
4163643 |
T |
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| Q |
217 |
ttgatacaaaggatattttcttacctgttacttggttagctgcaattctcattgttggaacagctgcatctgctgggtgtgtgaaactatccca |
310 |
Q |
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| T |
4163644 |
ttgatacaaaagatatattcttccccgttgctttattagatgcaattctcatcgttggaacagcggcatccgcagggtgagtgaaactatccca |
4163737 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 124; E-Value: 9e-64
Query Start/End: Original strand, 78 - 313
Target Start/End: Original strand, 4134347 - 4134582
Alignment:
| Q |
78 |
gttccgagaaaaaccaatccattccatggaccagttctccaatgaattttcttatcataccaaatgaaaacttctggtgcatccaatctttcaagactag |
177 |
Q |
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||||||||||||||| |||||||||||||||||||||||||| |||||| ||||| | ||||||||||||||||||| ||||||||||||||| |||| |
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| T |
4134347 |
gttccgagaaaaacccttccattccatggaccagttctccaataaatttttttatctttccaaatgaaaacttctggtacatccaatctttcaacactaa |
4134446 |
T |
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| Q |
178 |
ctgaataatgtcctgaagaaggatcattatcactttttcttgatacaaaggatattttcttacctgttacttggttagctgcaattctcattgttggaac |
277 |
Q |
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|| | ||||||| |||||||||||||| ||||||||||||| |||||| | |||| ||||||||| |||| |||| ||||||| |||| | |||||| |
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| T |
4134447 |
ttgtaaaatgtcccgaagaaggatcattgtcactttttcttgctacaaaagcaatttgcttacctgtaactttattagatgcaattttcatcgatggaac |
4134546 |
T |
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| Q |
278 |
agctgcatctgctgggtgtgtgaaactatcccagat |
313 |
Q |
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| T |
4134547 |
agctgaatctgcagggtgtgtgaaactatcccagat |
4134582 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 78 - 313
Target Start/End: Original strand, 4145149 - 4145384
Alignment:
| Q |
78 |
gttccgagaaaaaccaatccattccatggaccagttctccaatgaattttcttatcataccaaatgaaaacttctggtgcatccaatctttcaagactag |
177 |
Q |
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|||||||||||||| |||||||||||||||||||||||||| |||||| ||||| | ||||||||||||||||||| ||||||||||||||| |||| |
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| T |
4145149 |
gttccgagaaaaactcttccattccatggaccagttctccaataaatttttttatctttccaaatgaaaacttctggtacatccaatctttcaacactaa |
4145248 |
T |
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| Q |
178 |
ctgaataatgtcctgaagaaggatcattatcactttttcttgatacaaaggatattttcttacctgttacttggttagctgcaattctcattgttggaac |
277 |
Q |
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|| | ||||||| |||||||||||||| ||||||||||||| |||||| | |||| ||||||||| |||| ||||| ||||||| |||| | |||||| |
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| T |
4145249 |
ttgtaaaatgtcccgaagaaggatcattgtcactttttcttgctacaaaagcaatttgcttacctgtaactttgttagatgcaattttcatcgatggaac |
4145348 |
T |
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| Q |
278 |
agctgcatctgctgggtgtgtgaaactatcccagat |
313 |
Q |
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||||| ||||| ||||||||||||||||||||||| |
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| T |
4145349 |
agctgaatctgaagggtgtgtgaaactatcccagat |
4145384 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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