View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1706_high_38 (Length: 251)
Name: NF1706_high_38
Description: NF1706
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1706_high_38 |
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Alignment Details
Target: chr8 (Bit Score: 169; Significance: 1e-90; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 169; E-Value: 1e-90
Query Start/End: Original strand, 9 - 236
Target Start/End: Original strand, 39986763 - 39986993
Alignment:
| Q |
9 |
ttcaatttaaatcaatattccaacagaaaattttgaattaaaatgnnnnnnnn---tcaatgtttcgctatcaactatcctagtaaagttttaaccgaac |
105 |
Q |
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| T |
39986763 |
ttcaatttaaatcaatattccaacagaaaattttgaattaaaatgaaaacaaaaaatcaatgtttcgctatcaactatcctagtaaagttttaaccaaac |
39986862 |
T |
|
| Q |
106 |
tagtaacacacccaacagaagagttgagcaatgttattaatgtgaagtattcatgatggaccgaaataatttaatataaacaaaaagacacctaagtatt |
205 |
Q |
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|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||| |
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| T |
39986863 |
tagtaacacacccaactgaagagttgagcaatgttattaatgtgaagtattcatgatggaccgaaataatttaatataaacaaaaagacacctgagcatt |
39986962 |
T |
|
| Q |
206 |
caaaggatcaaccaattatagatgacattat |
236 |
Q |
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|||||| |||| ||||||||||||||||||| |
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| T |
39986963 |
caaagggtcaatcaattatagatgacattat |
39986993 |
T |
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