View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1706_high_4 (Length: 603)
Name: NF1706_high_4
Description: NF1706
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1706_high_4 |
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Alignment Details
Target: chr1 (Bit Score: 528; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 528; E-Value: 0
Query Start/End: Original strand, 1 - 596
Target Start/End: Complemental strand, 2244613 - 2244018
Alignment:
| Q |
1 |
tgttggattgacggtgagtttggtgaaatcacggtaacaccttgattttgccaaaatcatggtggcttagattcgctataaataaattcaaacatgcatt |
100 |
Q |
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| T |
2244613 |
tgttggattgacggtgagttttgtgaaatcacggtgacaccttgattttgccaaaatcatggtggcgcagattcgctataaataaattcaaacatgcatt |
2244514 |
T |
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| Q |
101 |
ggggctataactacagctgaatcagttgtatttgaccgcaattttctataattccaaagttgtgacatgattgcaatgcaactgtaaccgtaatttaaaa |
200 |
Q |
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| T |
2244513 |
ggggctataattacagctgcatcagttgtatttgaccgctattttctataattccaaagttgtgacatgatttcaatgcaactgtaaccgtaatttaaaa |
2244414 |
T |
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| Q |
201 |
tctaggtcaatgtgaatgatgatgtatggaatgtacaatgataatgatatgtaataattgatattgcagacaatggtgcaaatttttgatgatatgggtt |
300 |
Q |
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| T |
2244413 |
tctaggtcaatatgaatgatgatatatggaatgtacaatgataatgatatgtaataattgatattgcagacaatggtgcaaatttttgatgatatgggtt |
2244314 |
T |
|
| Q |
301 |
gtctacactgcatgggtgtgtccttttgaatttgggtttcttgagaaatcaaggggtgcactagcttatgcagacagcattgtgaatggannnnnnnnca |
400 |
Q |
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| T |
2244313 |
gtctacactgcatgggtgtgtccttttgaatttgggtttcttgagaaatcaaggggtgcactagcttatgcagacagcattgtgaatggattttttttca |
2244214 |
T |
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| Q |
401 |
ttgacattgttctcaccttctttgttgcctacgttgacaagactacttttctactcgtcgacgatcgatggaaaattgcttcgagatatttgaaatcttg |
500 |
Q |
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| T |
2244213 |
ttgacattgttctcaccttctttgttgcctacgttgacaagactacttttctactcgtcgacgatcgatggaaaattgcttcgagatatttgaaatcttg |
2244114 |
T |
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| Q |
501 |
gttcatccttgatgtgttctctatcattccttttgaaggttctatgtttttgttgccagattcactcgagatgtatggctacttcaatattcttcg |
596 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
2244113 |
gttcatccttgatgtgttctctatcattccttttgaaggttctatgtttttgttgccagattcactcgagatgtatggctacttcaatatttttcg |
2244018 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 36; Significance: 0.00000000006; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 3 - 50
Target Start/End: Original strand, 18898597 - 18898644
Alignment:
| Q |
3 |
ttggattgacggtgagtttggtgaaatcacggtaacaccttgattttg |
50 |
Q |
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| T |
18898597 |
ttggattgacggtgagcttgatgaaatcacggtgacaccttgattttg |
18898644 |
T |
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