View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1706_high_44 (Length: 241)
Name: NF1706_high_44
Description: NF1706
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1706_high_44 |
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| [»] scaffold0771 (1 HSPs) |
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Alignment Details
Target: scaffold0771 (Bit Score: 208; Significance: 1e-114; HSPs: 1)
Name: scaffold0771
Description:
Target: scaffold0771; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 1 - 224
Target Start/End: Complemental strand, 2104 - 1881
Alignment:
| Q |
1 |
ctactactaccatcagaagaacaactatcctccgtacttgcctcaatttcagtccaatcaggaggagagtaccatctcacaaagtcttccaaaatataca |
100 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2104 |
ctactactaccatcagaagaacaactatcctctgtacttgcctcaatttcagtccaatcaggaggagagtaccatctcacaaagtcttccaaaatataca |
2005 |
T |
|
| Q |
101 |
accgggatttgcagccttaaacatgatcataaacaaaattaactccgatggaacgtcactacataaggcacattccaaaagaattaagaatatcggtaaa |
200 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2004 |
accgggatttgcagccttaaacatgatcataagcaaaattaactccaatggaacgtcactacataaggcacattccaaaagaattaagaatatcggtaaa |
1905 |
T |
|
| Q |
201 |
gtattctcgtcgagggagagtatg |
224 |
Q |
| |
|
||||||||||||||| |||||||| |
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| T |
1904 |
gtattctcgtcgaggaagagtatg |
1881 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 208; Significance: 1e-114; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 1 - 224
Target Start/End: Complemental strand, 13949964 - 13949741
Alignment:
| Q |
1 |
ctactactaccatcagaagaacaactatcctccgtacttgcctcaatttcagtccaatcaggaggagagtaccatctcacaaagtcttccaaaatataca |
100 |
Q |
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|
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13949964 |
ctactactaccatcagaagaacaactatcctctgtacttgcctcaatttcagtccaatcaggaggagagtaccatctcacaaagtcttccaaaatataca |
13949865 |
T |
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| Q |
101 |
accgggatttgcagccttaaacatgatcataaacaaaattaactccgatggaacgtcactacataaggcacattccaaaagaattaagaatatcggtaaa |
200 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13949864 |
accgggatttgcagccttaaacatgatcataagcaaaattaactccaatggaacgtcactacataaggcacattccaaaagaattaagaatatcggtaaa |
13949765 |
T |
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| Q |
201 |
gtattctcgtcgagggagagtatg |
224 |
Q |
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||||||||||||||| |||||||| |
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| T |
13949764 |
gtattctcgtcgaggaagagtatg |
13949741 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 173; E-Value: 4e-93
Query Start/End: Original strand, 1 - 224
Target Start/End: Complemental strand, 20900196 - 20899976
Alignment:
| Q |
1 |
ctactactaccatcagaagaacaactatcctccgtacttgcctcaatttcagtccaatcaggaggagagtaccatctcacaaagtcttccaaaatataca |
100 |
Q |
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|||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
20900196 |
ctaccactaccatcagaagaacaactatcctcagtacttgcctcaatttcagtccaatcaggaggagagtaccatctcacaaagtcttccaaa--ataca |
20900099 |
T |
|
| Q |
101 |
accgggatttgcagccttaaacatgatcataaacaaaattaactccgatggaacgtcactacataaggcacattccaaaagaattaagaatatcggtaaa |
200 |
Q |
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||||||||||||||||| ||||||||||||||||||||||||||| ||||||| ||| |||||||||||||||||||||||||||||||||| |||||| |
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| T |
20900098 |
accgggatttgcagcctaaaacatgatcataaacaaaattaactctgatggaatatcaatacataaggcacattccaaaagaattaagaatattggtaaa |
20899999 |
T |
|
| Q |
201 |
gtattctcgtcgagggagagtatg |
224 |
Q |
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||||||||||||||||||||||| |
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| T |
20899998 |
-tattctcgtcgagggagagtatg |
20899976 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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