View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1706_high_47 (Length: 238)

Name: NF1706_high_47
Description: NF1706
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1706_high_47
NF1706_high_47
[»] chr7 (26 HSPs)
chr7 (18-231)||(33266382-33266595)
chr7 (41-115)||(19302482-19302556)
chr7 (43-111)||(9210902-9210970)
chr7 (34-117)||(11619070-11619153)
chr7 (41-117)||(4970711-4970787)
chr7 (41-88)||(44822062-44822109)
chr7 (162-223)||(119877-119938)
chr7 (33-82)||(37064379-37064428)
chr7 (41-117)||(18962502-18962578)
chr7 (33-69)||(40371565-40371601)
chr7 (167-231)||(45806524-45806588)
chr7 (41-80)||(1418531-1418570)
chr7 (33-88)||(11782954-11783009)
chr7 (41-88)||(22283565-22283612)
chr7 (43-86)||(33673183-33673226)
chr7 (41-88)||(34036021-34036068)
chr7 (40-79)||(44917444-44917483)
chr7 (36-79)||(47046022-47046065)
chr7 (33-71)||(529483-529521)
chr7 (35-69)||(28340990-28341024)
chr7 (41-71)||(40598404-40598434)
chr7 (41-115)||(46407310-46407384)
chr7 (43-88)||(18765388-18765433)
chr7 (32-72)||(25596152-25596192)
chr7 (45-117)||(33678855-33678927)
chr7 (35-71)||(34083521-34083557)
[»] chr4 (44 HSPs)
chr4 (33-91)||(27043741-27043799)
chr4 (42-113)||(15173223-15173294)
chr4 (41-103)||(17822784-17822846)
chr4 (41-87)||(42403942-42403988)
chr4 (41-88)||(41336864-41336911)
chr4 (41-88)||(54426147-54426194)
chr4 (43-116)||(22538998-22539071)
chr4 (43-88)||(52315118-52315163)
chr4 (41-90)||(55437178-55437227)
chr4 (35-87)||(35571544-35571596)
chr4 (47-91)||(49003800-49003844)
chr4 (34-69)||(679837-679872)
chr4 (33-76)||(1133044-1133087)
chr4 (33-80)||(3639079-3639126)
chr4 (41-88)||(8705045-8705092)
chr4 (41-72)||(17975256-17975287)
chr4 (41-88)||(21731575-21731622)
chr4 (35-70)||(21953395-21953430)
chr4 (41-80)||(25717705-25717744)
chr4 (41-80)||(29126182-29126221)
chr4 (49-88)||(29657488-29657527)
chr4 (41-76)||(32769495-32769530)
chr4 (41-88)||(39691068-39691115)
chr4 (41-88)||(44797984-44798031)
chr4 (41-88)||(49940086-49940133)
chr4 (41-79)||(825408-825446)
chr4 (36-106)||(2244137-2244207)
chr4 (38-71)||(3891712-3891745)
chr4 (162-231)||(7601718-7601787)
chr4 (35-68)||(19039566-19039599)
chr4 (41-82)||(25571369-25571410)
chr4 (41-86)||(29388720-29388765)
chr4 (41-86)||(53294033-53294078)
chr4 (35-68)||(53315450-53315483)
chr4 (35-80)||(54575516-54575561)
chr4 (44-88)||(1408061-1408105)
chr4 (35-71)||(7367967-7368003)
chr4 (36-88)||(13126490-13126542)
chr4 (32-88)||(18815127-18815183)
chr4 (32-88)||(24169367-24169423)
chr4 (41-69)||(24193655-24193683)
chr4 (35-71)||(25309313-25309349)
chr4 (171-231)||(42404049-42404109)
chr4 (41-113)||(55414332-55414404)
[»] chr5 (39 HSPs)
chr5 (41-86)||(39594913-39594958)
chr5 (41-180)||(12857257-12857398)
chr5 (31-80)||(14331478-14331527)
chr5 (35-88)||(34736440-34736493)
chr5 (36-115)||(32941546-32941626)
chr5 (31-91)||(35299866-35299926)
chr5 (32-88)||(41419423-41419479)
chr5 (32-88)||(41534542-41534598)
chr5 (32-71)||(14932417-14932456)
chr5 (42-88)||(9107194-9107240)
chr5 (43-88)||(7674751-7674796)
chr5 (31-88)||(7705907-7705964)
chr5 (33-70)||(9174938-9174975)
chr5 (44-88)||(11064770-11064814)
chr5 (41-223)||(16937802-16937986)
chr5 (44-84)||(22209746-22209786)
chr5 (41-80)||(499650-499689)
chr5 (41-88)||(3932595-3932642)
chr5 (41-88)||(10640057-10640104)
chr5 (49-88)||(12425677-12425716)
chr5 (41-79)||(17369316-17369354)
chr5 (41-83)||(32010054-32010096)
chr5 (41-79)||(36796626-36796664)
chr5 (33-71)||(42646791-42646829)
chr5 (49-86)||(4625835-4625872)
chr5 (43-88)||(6096651-6096696)
chr5 (45-86)||(9202671-9202712)
chr5 (41-86)||(32942700-32942745)
chr5 (40-113)||(42582606-42582679)
chr5 (33-69)||(8651263-8651299)
chr5 (40-88)||(11700266-11700314)
chr5 (41-117)||(12857624-12857700)
chr5 (39-71)||(14257569-14257601)
chr5 (43-79)||(14706205-14706241)
chr5 (53-113)||(15015922-15015982)
chr5 (41-81)||(32197844-32197884)
chr5 (42-70)||(35963351-35963379)
chr5 (41-117)||(41535456-41535532)
chr5 (41-77)||(42647005-42647041)
[»] chr2 (36 HSPs)
chr2 (41-117)||(27317454-27317530)
chr2 (41-117)||(4607000-4607076)
chr2 (41-117)||(18179024-18179100)
chr2 (41-113)||(30331830-30331902)
chr2 (41-91)||(15305775-15305825)
chr2 (35-91)||(2416414-2416470)
chr2 (32-88)||(3312181-3312237)
chr2 (43-115)||(42419870-42419942)
chr2 (41-84)||(31744406-31744449)
chr2 (33-88)||(39073613-39073668)
chr2 (39-80)||(22878210-22878251)
chr2 (43-80)||(28803451-28803488)
chr2 (35-71)||(6772446-6772482)
chr2 (32-88)||(7928208-7928264)
chr2 (39-79)||(18525158-18525198)
chr2 (35-115)||(23974406-23974486)
chr2 (41-72)||(3078527-3078558)
chr2 (41-88)||(10619139-10619186)
chr2 (41-80)||(15370242-15370281)
chr2 (40-115)||(20952432-20952507)
chr2 (41-88)||(26202132-26202179)
chr2 (44-91)||(31561664-31561711)
chr2 (41-108)||(44119866-44119933)
chr2 (47-81)||(26548564-26548598)
chr2 (33-71)||(35329729-35329767)
chr2 (41-79)||(40837356-40837394)
chr2 (169-223)||(41407042-41407096)
chr2 (41-70)||(750856-750885)
chr2 (35-80)||(4350802-4350847)
chr2 (41-117)||(26143561-26143635)
chr2 (47-80)||(35809979-35810012)
chr2 (42-79)||(40059381-40059418)
chr2 (42-79)||(40085281-40085318)
chr2 (43-88)||(44590128-44590173)
chr2 (35-79)||(2964722-2964766)
chr2 (39-71)||(13866999-13867031)
[»] chr8 (26 HSPs)
chr8 (41-88)||(38602431-38602478)
chr8 (41-115)||(30251373-30251447)
chr8 (32-231)||(10758167-10758367)
chr8 (43-115)||(43717855-43717927)
chr8 (36-115)||(36963268-36963347)
chr8 (40-88)||(1096594-1096642)
chr8 (33-69)||(5088243-5088279)
chr8 (33-105)||(29818855-29818927)
chr8 (29-80)||(2487915-2487966)
chr8 (41-88)||(9130238-9130285)
chr8 (41-88)||(32213223-32213270)
chr8 (41-88)||(35534532-35534579)
chr8 (43-117)||(39551130-39551205)
chr8 (41-79)||(2606162-2606200)
chr8 (42-80)||(4560614-4560652)
chr8 (41-115)||(15180617-15180690)
chr8 (33-79)||(29417522-29417568)
chr8 (41-83)||(35374371-35374413)
chr8 (42-88)||(40859703-40859749)
chr8 (41-87)||(42893409-42893455)
chr8 (43-88)||(12496993-12497038)
chr8 (50-79)||(23996557-23996586)
chr8 (32-88)||(1057987-1058043)
chr8 (31-71)||(10727465-10727505)
chr8 (32-80)||(35928640-35928688)
chr8 (41-117)||(41589661-41589737)
[»] chr6 (26 HSPs)
chr6 (35-88)||(21405067-21405120)
chr6 (35-117)||(10645298-10645380)
chr6 (41-86)||(35069531-35069576)
chr6 (40-84)||(4163261-4163305)
chr6 (40-84)||(4224882-4224926)
chr6 (39-71)||(31776189-31776221)
chr6 (34-78)||(33027706-33027750)
chr6 (40-115)||(33089582-33089658)
chr6 (54-117)||(2455334-2455397)
chr6 (41-80)||(2457053-2457092)
chr6 (33-88)||(6536716-6536771)
chr6 (36-87)||(18612411-18612462)
chr6 (41-87)||(835180-835226)
chr6 (41-71)||(9202904-9202934)
chr6 (169-231)||(18076155-18076217)
chr6 (169-227)||(24626258-24626316)
chr6 (41-103)||(24982794-24982856)
chr6 (33-67)||(29249518-29249552)
chr6 (41-87)||(34404645-34404691)
chr6 (39-88)||(32729060-32729109)
chr6 (43-88)||(35071598-35071643)
chr6 (48-80)||(2455922-2455954)
chr6 (34-70)||(10452333-10452369)
chr6 (43-71)||(12111088-12111116)
chr6 (41-73)||(19800376-19800408)
chr6 (41-81)||(30536884-30536924)
[»] chr3 (39 HSPs)
chr3 (42-115)||(584123-584196)
chr3 (42-115)||(24085258-24085331)
chr3 (37-114)||(34610721-34610798)
chr3 (41-88)||(16072960-16073007)
chr3 (41-88)||(25447164-25447211)
chr3 (144-227)||(36631075-36631158)
chr3 (41-115)||(42799885-42799960)
chr3 (40-78)||(26990143-26990181)
chr3 (35-77)||(31615473-31615515)
chr3 (43-88)||(18405752-18405797)
chr3 (43-84)||(26911699-26911740)
chr3 (35-76)||(32663754-32663795)
chr3 (44-85)||(33405114-33405155)
chr3 (42-115)||(51929277-51929350)
chr3 (35-79)||(20210841-20210885)
chr3 (37-80)||(2080998-2081041)
chr3 (41-88)||(20170633-20170680)
chr3 (41-84)||(24684741-24684784)
chr3 (37-84)||(32582845-32582892)
chr3 (40-71)||(46407863-46407894)
chr3 (41-88)||(46478771-46478818)
chr3 (35-69)||(2100092-2100126)
chr3 (165-231)||(5331252-5331318)
chr3 (41-91)||(9832674-9832724)
chr3 (38-80)||(21872211-21872253)
chr3 (165-231)||(29520524-29520590)
chr3 (43-81)||(46407617-46407655)
chr3 (53-86)||(5448550-5448583)
chr3 (142-223)||(30443860-30443941)
chr3 (142-227)||(35959478-35959563)
chr3 (35-88)||(39980833-39980886)
chr3 (41-113)||(47132397-47132467)
chr3 (41-70)||(51929863-51929892)
chr3 (42-70)||(20669471-20669499)
chr3 (43-87)||(21367772-21367816)
chr3 (41-85)||(34235012-34235056)
chr3 (41-117)||(42747701-42747777)
chr3 (34-78)||(45432865-45432909)
chr3 (53-117)||(46778122-46778186)
[»] chr1 (43 HSPs)
chr1 (41-117)||(50644174-50644250)
chr1 (162-227)||(14576695-14576760)
chr1 (42-107)||(24334280-24334345)
chr1 (42-91)||(39976130-39976179)
chr1 (47-103)||(38116002-38116058)
chr1 (41-80)||(6292604-6292643)
chr1 (41-88)||(33204313-33204360)
chr1 (41-115)||(2295173-2295247)
chr1 (41-103)||(2295280-2295342)
chr1 (41-103)||(14385712-14385774)
chr1 (43-88)||(1432619-1432664)
chr1 (41-114)||(36872806-36872879)
chr1 (41-82)||(41505784-41505825)
chr1 (41-117)||(3233934-3234010)
chr1 (45-231)||(13809957-13810145)
chr1 (40-79)||(7217992-7218031)
chr1 (41-88)||(27146174-27146221)
chr1 (40-115)||(37617383-37617458)
chr1 (41-71)||(3319865-3319895)
chr1 (35-77)||(5151990-5152032)
chr1 (54-88)||(7028406-7028440)
chr1 (41-87)||(7069384-7069430)
chr1 (44-86)||(15784423-15784465)
chr1 (162-231)||(28043589-28043659)
chr1 (40-69)||(5886910-5886939)
chr1 (58-103)||(7107448-7107493)
chr1 (170-231)||(33186225-33186286)
chr1 (43-80)||(34303178-34303215)
chr1 (33-70)||(34952324-34952361)
chr1 (43-80)||(51929383-51929420)
chr1 (41-113)||(473242-473314)
chr1 (37-69)||(601163-601195)
chr1 (33-65)||(3887543-3887575)
chr1 (43-79)||(5157185-5157221)
chr1 (48-88)||(6102257-6102297)
chr1 (199-231)||(9572187-9572219)
chr1 (44-80)||(10199330-10199366)
chr1 (41-77)||(24460320-24460356)
chr1 (166-230)||(26678863-26678927)
chr1 (35-71)||(26866434-26866470)
chr1 (43-79)||(29793619-29793655)
chr1 (162-222)||(37517236-37517296)
chr1 (32-68)||(48748505-48748541)
[»] scaffold0024 (2 HSPs)
scaffold0024 (37-71)||(21213-21247)
scaffold0024 (33-70)||(58995-59032)
[»] scaffold0459 (1 HSPs)
scaffold0459 (34-67)||(6671-6704)
[»] scaffold0366 (1 HSPs)
scaffold0366 (34-67)||(6669-6702)


Alignment Details
Target: chr7 (Bit Score: 185; Significance: 1e-100; HSPs: 26)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 18 - 231
Target Start/End: Original strand, 33266382 - 33266595
Alignment:
Q  18 catggagtttcaatctaagggtatgtttggattgacttatttgagcttatctaccgacataagttttgtgaaaccattttggagaatttacgaaaacaac 117  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||    
T  33266382 catggagtttcaatctaagggtatgtttggattgacttatttgagcttatctaccgacataagttttgtgaaactatttgggagaatttacgaaaacaac 33266481  T
Q  118 atgacaattcgcaaaagnnnnnnncagcttatttttgtaatttttctaatgtagcttataaaaagaacttataggatgtagaaaagcaatttaactttat 217  Q
    |||||||||||||||||       ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33266482 atgacaattcgcaaaagtttttttcagcttatttttgtaatttttctaatgtagcttataaaaagaacttataggatgtagaaaagcaatttaactttat 33266581  T
Q  218 tttatcctttgcta 231  Q
    ||||||||||||||    
T  33266582 tttatcctttgcta 33266595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 41 - 115
Target Start/End: Original strand, 19302482 - 19302556
Alignment:
Q  41 tgtttggattgacttatttgagcttatctaccgacataagttttgtgaaaccattttggagaatttacgaaaaca 115  Q
    |||||| |||||||||||||||||||||||| |||||||||||||||| |  |||| |||||||||| |||||||    
T  19302482 tgtttgaattgacttatttgagcttatctactgacataagttttgtgagaatatttgggagaatttatgaaaaca 19302556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 43 - 111
Target Start/End: Complemental strand, 9210970 - 9210902
Alignment:
Q  43 tttggattgacttatttgagcttatctaccgacataagttttgtgaaaccattttggagaatttacgaa 111  Q
    ||||||||||||||||||||||||||||| || ||||||||| ||| ||  ||| ||||||||||||||    
T  9210970 tttggattgacttatttgagcttatctactgatataagttttctgagactgtttgggagaatttacgaa 9210902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 34 - 117
Target Start/End: Original strand, 11619070 - 11619153
Alignment:
Q  34 aagggtatgtttggattgacttatttgagcttatctaccgacataagttttgtgaaaccattttggagaatttacgaaaacaac 117  Q
    |||||| ||||||||||| ||||||||||||||||||| |||||||| ||  ||||||   || |||||||||| |||||||||    
T  11619070 aagggtttgtttggattggcttatttgagcttatctactgacataagcttcatgaaacagattgggagaatttatgaaaacaac 11619153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 41 - 117
Target Start/End: Original strand, 4970711 - 4970787
Alignment:
Q  41 tgtttggattgacttatttgagcttatctaccgacataagttttgtgaaaccattttggagaatttacgaaaacaac 117  Q
    |||||||||||||||||||||||||||||   ||||||||| |||||| ||  ||| |||||| ||| |||||||||    
T  4970711 tgtttggattgacttatttgagcttatctcgtgacataagtcttgtgagactgtttgggagaacttatgaaaacaac 4970787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 41 - 88
Target Start/End: Complemental strand, 44822109 - 44822062
Alignment:
Q  41 tgtttggattgacttatttgagcttatctaccgacataagttttgtga 88  Q
    |||||||||||||||||||||| |||||| | ||||||||||||||||    
T  44822109 tgtttggattgacttatttgagtttatctgctgacataagttttgtga 44822062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 162 - 223
Target Start/End: Complemental strand, 119938 - 119877
Alignment:
Q  162 tctaatgtagcttataaaaagaacttataggatgtagaaaagcaatttaactttattttatc 223  Q
    ||||||||| |||||||||| ||||||||| || || | || ||||||||||||||||||||    
T  119938 tctaatgtaacttataaaaacaacttatagcatttacacaaacaatttaactttattttatc 119877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 33 - 82
Target Start/End: Original strand, 37064379 - 37064428
Alignment:
Q  33 taagggtatgtttggattgacttatttgagcttatctaccgacataagtt 82  Q
    ||||||| ||||||||||||||||||||| ||||||||| || |||||||    
T  37064379 taagggtctgtttggattgacttatttgatcttatctactgatataagtt 37064428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 41 - 117
Target Start/End: Original strand, 18962502 - 18962578
Alignment:
Q  41 tgtttggattgacttatttgagcttatctaccgacataagttttgtgaaaccattttggagaatttacgaaaacaac 117  Q
    |||||||||||| ||||| || ||||||||| |||||||||||||| | ||  |||||||||| ||| |||| ||||    
T  18962502 tgtttggattgagttattcgatcttatctactgacataagttttgttagactgttttggagaacttatgaaaccaac 18962578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 33 - 69
Target Start/End: Original strand, 40371565 - 40371601
Alignment:
Q  33 taagggtatgtttggattgacttatttgagcttatct 69  Q
    |||||| ||||||||||||||||||||||||||||||    
T  40371565 taagggcatgtttggattgacttatttgagcttatct 40371601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 167 - 231
Target Start/End: Original strand, 45806524 - 45806588
Alignment:
Q  167 tgtagcttataaaaagaacttataggatgtagaaaagcaatttaactttattttatcctttgcta 231  Q
    ||||||||||||||| ||||||||| |  ||||||| ||||||||| ||||||| || |||||||    
T  45806524 tgtagcttataaaaacaacttatagcaattagaaaaacaatttaacgttattttctcttttgcta 45806588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 41 - 80
Target Start/End: Complemental strand, 1418570 - 1418531
Alignment:
Q  41 tgtttggattgacttatttgagcttatctaccgacataag 80  Q
    ||||||||||||||||||||||||||||||| | ||||||    
T  1418570 tgtttggattgacttatttgagcttatctactggcataag 1418531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 33 - 88
Target Start/End: Original strand, 11782954 - 11783009
Alignment:
Q  33 taagggtatgtttggattgacttatttgagcttatctaccgacataagttttgtga 88  Q
    ||||||| |||||||||||||||||||||| |||||||| ||  ||||||| ||||    
T  11782954 taagggtttgtttggattgacttatttgagattatctactgatgtaagtttagtga 11783009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 41 - 88
Target Start/End: Original strand, 22283565 - 22283612
Alignment:
Q  41 tgtttggattgacttatttgagcttatctaccgacataagttttgtga 88  Q
    ||||||||||||||||||||| ||||||||| | ||||| ||||||||    
T  22283565 tgtttggattgacttatttgaacttatctactgtcataaattttgtga 22283612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 43 - 86
Target Start/End: Complemental strand, 33673226 - 33673183
Alignment:
Q  43 tttggattgacttatttgagcttatctaccgacataagttttgt 86  Q
    |||||||||||| |||||||||||||||| |||||||| |||||    
T  33673226 tttggattgactcatttgagcttatctactgacataagctttgt 33673183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 41 - 88
Target Start/End: Complemental strand, 34036068 - 34036021
Alignment:
Q  41 tgtttggattgacttatttgagcttatctaccgacataagttttgtga 88  Q
    |||||| |||||||||||||||||||||||| |||||| || ||||||    
T  34036068 tgtttgaattgacttatttgagcttatctactgacatatgtattgtga 34036021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 40 - 79
Target Start/End: Original strand, 44917444 - 44917483
Alignment:
Q  40 atgtttggattgacttatttgagcttatctaccgacataa 79  Q
    ||||||||||||||||||||||| |||||| |||||||||    
T  44917444 atgtttggattgacttatttgagtttatctcccgacataa 44917483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 36 - 79
Target Start/End: Original strand, 47046022 - 47046065
Alignment:
Q  36 gggtatgtttggattgacttatttgagcttatctaccgacataa 79  Q
    |||| |||||||||||||||||||| |||||||||| |||||||    
T  47046022 gggtctgtttggattgacttatttgtgcttatctactgacataa 47046065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 33 - 71
Target Start/End: Complemental strand, 529521 - 529483
Alignment:
Q  33 taagggtatgtttggattgacttatttgagcttatctac 71  Q
    ||||||| || ||||||||||||||||||||||||||||    
T  529521 taagggtctgattggattgacttatttgagcttatctac 529483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 35 - 69
Target Start/End: Original strand, 28340990 - 28341024
Alignment:
Q  35 agggtatgtttggattgacttatttgagcttatct 69  Q
    ||||| |||||||||||||||||||||||||||||    
T  28340990 agggtctgtttggattgacttatttgagcttatct 28341024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 41 - 71
Target Start/End: Original strand, 40598404 - 40598434
Alignment:
Q  41 tgtttggattgacttatttgagcttatctac 71  Q
    |||||||||||||||||||||||||||||||    
T  40598404 tgtttggattgacttatttgagcttatctac 40598434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 41 - 115
Target Start/End: Complemental strand, 46407384 - 46407310
Alignment:
Q  41 tgtttggattgacttatttgagcttatctaccgacataagttttgtgaaaccattttggagaatttacgaaaaca 115  Q
    |||| |||||| |||| |||||||||||||| | ||||||||||| ||||| | || |||||| ||| |||||||    
T  46407384 tgttaggattggcttaattgagcttatctactgccataagttttgggaaactacttgggagaacttatgaaaaca 46407310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 43 - 88
Target Start/End: Complemental strand, 18765433 - 18765388
Alignment:
Q  43 tttggattgacttatttgagcttatctaccgacataagttttgtga 88  Q
    |||||||||  |||||||||||||||||  ||||||||||||||||    
T  18765433 tttggattgctttatttgagcttatctattgacataagttttgtga 18765388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 32 - 72
Target Start/End: Complemental strand, 25596192 - 25596152
Alignment:
Q  32 ctaagggtatgtttggattgacttatttgagcttatctacc 72  Q
    |||||||  |||||||| |||||||||||||||||||||||    
T  25596192 ctaagggcctgtttggactgacttatttgagcttatctacc 25596152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 45 - 117
Target Start/End: Complemental strand, 33678927 - 33678855
Alignment:
Q  45 tggattgacttatttgagcttatctaccgacataagttttgtgaaaccattttggagaatttacgaaaacaac 117  Q
    ||||||| ||||||| | |||||||||   |||||||||||||| || |||| |||||| ||| |||||||||    
T  33678927 tggattggcttatttaaacttatctacttgcataagttttgtgagacaatttgggagaacttatgaaaacaac 33678855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 35 - 71
Target Start/End: Original strand, 34083521 - 34083557
Alignment:
Q  35 agggtatgtttggattgacttatttgagcttatctac 71  Q
    |||| ||||||||||||||||||||||||| ||||||    
T  34083521 agggcatgtttggattgacttatttgagctcatctac 34083557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 51; Significance: 2e-20; HSPs: 44)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 33 - 91
Target Start/End: Original strand, 27043741 - 27043799
Alignment:
Q  33 taagggtatgtttggattgacttatttgagcttatctaccgacataagttttgtgaaac 91  Q
    ||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  27043741 taagggtctgtttggattgacttatttgagcttatctactgacataagttttgtgaaac 27043799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 42 - 113
Target Start/End: Original strand, 15173223 - 15173294
Alignment:
Q  42 gtttggattgacttatttgagcttatctaccgacataagttttgtgaaaccattttggagaatttacgaaaa 113  Q
    |||||||||||||||||||| ||||||||| |||||||||||||||| ||  ||| ||||| |||| |||||    
T  15173223 gtttggattgacttatttgaacttatctactgacataagttttgtgagactgtttgggagactttatgaaaa 15173294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 41 - 103
Target Start/End: Original strand, 17822784 - 17822846
Alignment:
Q  41 tgtttggattgacttatttgagcttatctaccgacataagttttgtgaaaccattttggagaa 103  Q
    |||||||||| |||||||||||||||||||| |||||||||| ||||| || |||| ||||||    
T  17822784 tgtttggattaacttatttgagcttatctactgacataagttctgtgagactatttaggagaa 17822846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 41 - 87
Target Start/End: Original strand, 42403942 - 42403988
Alignment:
Q  41 tgtttggattgacttatttgagcttatctaccgacataagttttgtg 87  Q
    |||||||||||||||||||||||||||| || |||||||||||||||    
T  42403942 tgtttggattgacttatttgagcttatcaactgacataagttttgtg 42403988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 41 - 88
Target Start/End: Complemental strand, 41336911 - 41336864
Alignment:
Q  41 tgtttggattgacttatttgagcttatctaccgacataagttttgtga 88  Q
    |||||||||||||||||||||| ||||||||  |||||||||||||||    
T  41336911 tgtttggattgacttatttgagtttatctactcacataagttttgtga 41336864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 41 - 88
Target Start/End: Complemental strand, 54426194 - 54426147
Alignment:
Q  41 tgtttggattgacttatttgagcttatctaccgacataagttttgtga 88  Q
    ||||||||||| ||||||||||||||||||| | ||||||||||||||    
T  54426194 tgtttggattggcttatttgagcttatctactggcataagttttgtga 54426147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 43 - 116
Target Start/End: Original strand, 22538998 - 22539071
Alignment:
Q  43 tttggattgactta-tttgagcttatctaccgacataagttttgtgaaaccattttggagaatttacgaaaacaa 116  Q
    |||||||||||||| ||||||||||||||| | |||||| ||||||| || |||| |||||| ||||||||||||    
T  22538998 tttggattgacttactttgagcttatctactggcataag-tttgtgagacaatttgggagaacttacgaaaacaa 22539071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 43 - 88
Target Start/End: Original strand, 52315118 - 52315163
Alignment:
Q  43 tttggattgacttatttgagcttatctaccgacataagttttgtga 88  Q
    |||||||||||||||||||| |||||||| ||| ||||||||||||    
T  52315118 tttggattgacttatttgagtttatctactgacgtaagttttgtga 52315163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 41 - 90
Target Start/End: Complemental strand, 55437227 - 55437178
Alignment:
Q  41 tgtttggattgacttatttgagcttatctaccgacataagttttgtgaaa 90  Q
    ||||||||||| |||||||||| |||||||| | ||||||||||||||||    
T  55437227 tgtttggattggcttatttgagtttatctactgccataagttttgtgaaa 55437178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 35 - 87
Target Start/End: Original strand, 35571544 - 35571596
Alignment:
Q  35 agggtatgtttggattgacttatttgagcttatctaccgacataagttttgtg 87  Q
    ||||| ||||||||||| |||||||||||||||||||   |||||||||||||    
T  35571544 agggtctgtttggattggcttatttgagcttatctactagcataagttttgtg 35571596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 47 - 91
Target Start/End: Original strand, 49003800 - 49003844
Alignment:
Q  47 gattgacttatttgagcttatctaccgacataagttttgtgaaac 91  Q
    |||||||||||||||||||||| || ||| |||||||||||||||    
T  49003800 gattgacttatttgagcttatccactgacgtaagttttgtgaaac 49003844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 34 - 69
Target Start/End: Complemental strand, 679872 - 679837
Alignment:
Q  34 aagggtatgtttggattgacttatttgagcttatct 69  Q
    ||||||||||||||||||||| ||||||||||||||    
T  679872 aagggtatgtttggattgactaatttgagcttatct 679837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 33 - 76
Target Start/End: Complemental strand, 1133087 - 1133044
Alignment:
Q  33 taagggtatgtttggattgacttatttgagcttatctaccgaca 76  Q
    ||||||| |||||| |||||||||||||||||||||||| ||||    
T  1133087 taagggtgtgtttgaattgacttatttgagcttatctactgaca 1133044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 33 - 80
Target Start/End: Original strand, 3639079 - 3639126
Alignment:
Q  33 taagggtatgtttggattgacttatttgagcttatctaccgacataag 80  Q
    |||||| || ||||||||  ||||||||||||||||||||||||||||    
T  3639079 taagggcatatttggatttgcttatttgagcttatctaccgacataag 3639126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 41 - 88
Target Start/End: Complemental strand, 8705092 - 8705045
Alignment:
Q  41 tgtttggattgacttatttgagcttatctaccgacataagttttgtga 88  Q
    ||||||||||| || |||||||||||||||  ||||||||||||||||    
T  8705092 tgtttggattggctcatttgagcttatctattgacataagttttgtga 8705045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 41 - 72
Target Start/End: Original strand, 17975256 - 17975287
Alignment:
Q  41 tgtttggattgacttatttgagcttatctacc 72  Q
    ||||||||||||||||||||||||||||||||    
T  17975256 tgtttggattgacttatttgagcttatctacc 17975287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 41 - 88
Target Start/End: Original strand, 21731575 - 21731622
Alignment:
Q  41 tgtttggattgacttatttgagcttatctaccgacataagttttgtga 88  Q
    |||||||||||  |||||||||| ||||||| ||||||||||||||||    
T  21731575 tgtttggattggtttatttgagcatatctactgacataagttttgtga 21731622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 35 - 70
Target Start/End: Complemental strand, 21953430 - 21953395
Alignment:
Q  35 agggtatgtttggattgacttatttgagcttatcta 70  Q
    ||||| ||||||||||||||||||||||||||||||    
T  21953430 agggtctgtttggattgacttatttgagcttatcta 21953395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 41 - 80
Target Start/End: Complemental strand, 25717744 - 25717705
Alignment:
Q  41 tgtttggattgacttatttgagcttatctaccgacataag 80  Q
    ||||||||||| ||||||||||||||| ||||||||||||    
T  25717744 tgtttggattgtcttatttgagcttatgtaccgacataag 25717705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 41 - 80
Target Start/End: Original strand, 29126182 - 29126221
Alignment:
Q  41 tgtttggattgacttatttgagcttatctaccgacataag 80  Q
    ||||||||||| ||||||||||||||||||||| ||||||    
T  29126182 tgtttggattggcttatttgagcttatctaccggcataag 29126221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 49 - 88
Target Start/End: Complemental strand, 29657527 - 29657488
Alignment:
Q  49 ttgacttatttgagcttatctaccgacataagttttgtga 88  Q
    |||||||||||||||||||||||| ||| |||||||||||    
T  29657527 ttgacttatttgagcttatctaccaacacaagttttgtga 29657488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 41 - 76
Target Start/End: Complemental strand, 32769530 - 32769495
Alignment:
Q  41 tgtttggattgacttatttgagcttatctaccgaca 76  Q
    ||||||||||||||||||| ||||||||||||||||    
T  32769530 tgtttggattgacttattttagcttatctaccgaca 32769495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 41 - 88
Target Start/End: Original strand, 39691068 - 39691115
Alignment:
Q  41 tgtttggattgacttatttgagcttatctaccgacataagttttgtga 88  Q
    |||||| ||||||||||||||||||||||||   ||||||||||||||    
T  39691068 tgtttgaattgacttatttgagcttatctactagcataagttttgtga 39691115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 41 - 88
Target Start/End: Complemental strand, 44798031 - 44797984
Alignment:
Q  41 tgtttggattgacttatttgagcttatctaccgacataagttttgtga 88  Q
    ||||||||||| || |||| ||||||||||| ||||||||||||||||    
T  44798031 tgtttggattggctgatttaagcttatctactgacataagttttgtga 44797984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 41 - 88
Target Start/End: Original strand, 49940086 - 49940133
Alignment:
Q  41 tgtttggattgacttatttgagcttatctaccgacataagttttgtga 88  Q
    |||||||||||||||||||||||||| || |  |||||||||||||||    
T  49940086 tgtttggattgacttatttgagcttacctgctaacataagttttgtga 49940133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 41 - 79
Target Start/End: Original strand, 825408 - 825446
Alignment:
Q  41 tgtttggattgacttatttgagcttatctaccgacataa 79  Q
    ||||||||||||||||||||||||||| |||| ||||||    
T  825408 tgtttggattgacttatttgagcttatatacctacataa 825446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 36 - 106
Target Start/End: Complemental strand, 2244207 - 2244137
Alignment:
Q  36 gggtatgtttggattgacttatttgagcttatctaccgacataagttttgtgaaaccattttggagaattt 106  Q
    |||| |||||||||||| ||||  ||| |||||||| |||||||||||| ||||||  ||| |||||||||    
T  2244207 gggtctgtttggattgatttatccgagtttatctactgacataagttttttgaaactgtttgggagaattt 2244137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 38 - 71
Target Start/End: Complemental strand, 3891745 - 3891712
Alignment:
Q  38 gtatgtttggattgacttatttgagcttatctac 71  Q
    ||||||||||||||||||||||||| ||||||||    
T  3891745 gtatgtttggattgacttatttgagtttatctac 3891712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 162 - 231
Target Start/End: Complemental strand, 7601787 - 7601718
Alignment:
Q  162 tctaatgtagcttataaaaagaacttataggatgtagaaaagcaatttaactttattttatcctttgcta 231  Q
    |||||| ||| |||||||||  ||| |||  || || |||| ||||||||||||||||||||||||||||    
T  7601787 tctaatatagtttataaaaactactcataacatatacaaaaacaatttaactttattttatcctttgcta 7601718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 35 - 68
Target Start/End: Original strand, 19039566 - 19039599
Alignment:
Q  35 agggtatgtttggattgacttatttgagcttatc 68  Q
    |||||||||||||||||| |||||||||||||||    
T  19039566 agggtatgtttggattgagttatttgagcttatc 19039599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 41 - 82
Target Start/End: Complemental strand, 25571410 - 25571369
Alignment:
Q  41 tgtttggattgacttatttgagcttatctaccgacataagtt 82  Q
    ||||||||||| |||||||||| |||||||| ||||||||||    
T  25571410 tgtttggattggcttatttgagtttatctactgacataagtt 25571369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 41 - 86
Target Start/End: Complemental strand, 29388765 - 29388720
Alignment:
Q  41 tgtttggattgacttatttgagcttatctaccgacataagttttgt 86  Q
    ||||||| ||||||||||||| |||||||||  |||||||||||||    
T  29388765 tgtttgggttgacttatttgaccttatctactaacataagttttgt 29388720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 41 - 86
Target Start/End: Original strand, 53294033 - 53294078
Alignment:
Q  41 tgtttggattgacttatttgagcttatctaccgacataagttttgt 86  Q
    |||||||||||||| ||||| |||||||||| ||||| ||||||||    
T  53294033 tgtttggattgactaatttgtgcttatctactgacatgagttttgt 53294078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 35 - 68
Target Start/End: Complemental strand, 53315483 - 53315450
Alignment:
Q  35 agggtatgtttggattgacttatttgagcttatc 68  Q
    ||||| ||||||||||||||||||||||||||||    
T  53315483 agggtctgtttggattgacttatttgagcttatc 53315450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 35 - 80
Target Start/End: Original strand, 54575516 - 54575561
Alignment:
Q  35 agggtatgtttggattgacttatttgagcttatctaccgacataag 80  Q
    |||||||||||||||||||||||||||| |||| ||  ||||||||    
T  54575516 agggtatgtttggattgacttatttgagtttatttatagacataag 54575561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #36
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 44 - 88
Target Start/End: Complemental strand, 1408105 - 1408061
Alignment:
Q  44 ttggattgacttatttgagcttatctaccgacataagttttgtga 88  Q
    |||||||| |||||||||||||||||||  ||| |||||||||||    
T  1408105 ttggattggcttatttgagcttatctacatacacaagttttgtga 1408061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #37
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 35 - 71
Target Start/End: Original strand, 7367967 - 7368003
Alignment:
Q  35 agggtatgtttggattgacttatttgagcttatctac 71  Q
    ||||| |||||||||||||||||||||| ||||||||    
T  7367967 agggtctgtttggattgacttatttgagtttatctac 7368003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #38
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 36 - 88
Target Start/End: Original strand, 13126490 - 13126542
Alignment:
Q  36 gggtatgtttggattgacttatttgagcttatctaccgacataagttttgtga 88  Q
    |||| ||||||||||| ||||||| |||||| ||||  |||||||||||||||    
T  13126490 gggtctgtttggattggcttattttagcttacctactaacataagttttgtga 13126542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #39
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 32 - 88
Target Start/End: Complemental strand, 18815183 - 18815127
Alignment:
Q  32 ctaagggtatgtttggattgacttatttgagcttatctaccgacataagttttgtga 88  Q
    |||||||  ||||||||||| |||||||||||||| ||||   ||||||||||||||    
T  18815183 ctaagggcctgtttggattggcttatttgagcttacctactagcataagttttgtga 18815127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #40
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 32 - 88
Target Start/End: Complemental strand, 24169423 - 24169367
Alignment:
Q  32 ctaagggtatgtttggattgacttatttgagcttatctaccgacataagttttgtga 88  Q
    |||||||  ||||||||||| |||||| ||| |||||||| | ||||||||||||||    
T  24169423 ctaagggcttgtttggattggcttattagagtttatctactggcataagttttgtga 24169367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #41
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 41 - 69
Target Start/End: Complemental strand, 24193683 - 24193655
Alignment:
Q  41 tgtttggattgacttatttgagcttatct 69  Q
    |||||||||||||||||||||||||||||    
T  24193683 tgtttggattgacttatttgagcttatct 24193655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #42
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 35 - 71
Target Start/End: Complemental strand, 25309349 - 25309313
Alignment:
Q  35 agggtatgtttggattgacttatttgagcttatctac 71  Q
    ||||| ||||||||||||||||||||| |||||||||    
T  25309349 agggtctgtttggattgacttatttgaacttatctac 25309313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #43
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 171 - 231
Target Start/End: Original strand, 42404049 - 42404109
Alignment:
Q  171 gcttataaaaagaacttataggatgtagaaaagcaatttaactttattttatcctttgcta 231  Q
    ||||||||||| | |||| || ||||| |||| ||||||||| |||||||||| |||||||    
T  42404049 gcttataaaaacagcttacagcatgtacaaaaacaatttaacattattttatcttttgcta 42404109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #44
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 41 - 113
Target Start/End: Original strand, 55414332 - 55414404
Alignment:
Q  41 tgtttggattgacttatttgagcttatctaccgacataagttttgtgaaaccattttggagaatttacgaaaa 113  Q
    ||||||||||||||||||||||  ||||||| | ||||| ||||||||  |  ||| |||||||||| |||||    
T  55414332 tgtttggattgacttatttgagagtatctactggcataatttttgtgatgctgtttaggagaatttatgaaaa 55414404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 46; Significance: 2e-17; HSPs: 39)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 41 - 86
Target Start/End: Complemental strand, 39594958 - 39594913
Alignment:
Q  41 tgtttggattgacttatttgagcttatctaccgacataagttttgt 86  Q
    ||||||||||||||||||||||||||||||||||||||||||||||    
T  39594958 tgtttggattgacttatttgagcttatctaccgacataagttttgt 39594913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 41 - 180
Target Start/End: Original strand, 12857257 - 12857398
Alignment:
Q  41 tgtttggattgacttatttgagcttatctaccgacataagttttgtgaaaccattttggagaatttacgaaaacaac--atgacaattcgcaaaagnnnn 138  Q
    |||||||||||  |||||||||||||||||  ||| |||||||||||||||  ||  |||||| ||| |||||||||  |||||||||  || |||        
T  12857257 tgtttggattggtttatttgagcttatctattgacgtaagttttgtgaaacttttccggagaacttatgaaaacaacttatgacaattttcacaagcttt 12857356  T
Q  139 nnncagcttatttttgtaatttttctaatgtagcttataaaa 180  Q
       |||||||||||||||| || || ||| ||||||||||||    
T  12857357 tttcagcttatttttgtaagttctccaatatagcttataaaa 12857398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 31 - 80
Target Start/End: Complemental strand, 14331527 - 14331478
Alignment:
Q  31 tctaagggtatgtttggattgacttatttgagcttatctaccgacataag 80  Q
    ||||||||| ||||||||||||||||||||||||||||||| | ||||||    
T  14331527 tctaagggtctgtttggattgacttatttgagcttatctactgtcataag 14331478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 35 - 88
Target Start/End: Original strand, 34736440 - 34736493
Alignment:
Q  35 agggtatgtttggattgacttatttgagcttatctaccgacataagttttgtga 88  Q
    |||| ||||||||||||||||||||||||||||||   ||||||||||||||||    
T  34736440 agggcatgtttggattgacttatttgagcttatctggtgacataagttttgtga 34736493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 36 - 115
Target Start/End: Complemental strand, 32941626 - 32941546
Alignment:
Q  36 gggtatgtttggattgacttatttgagc-ttatctaccgacataagttttgtgaaaccattttggagaatttacgaaaaca 115  Q
    |||| |||||||||||||||||| |||| |||||||| |||||||||| ||||| ||| ||| |||||| ||| |||||||    
T  32941626 gggtctgtttggattgacttattagagctttatctactgacataagttctgtgagaccgtttgggagaacttatgaaaaca 32941546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 31 - 91
Target Start/End: Complemental strand, 35299926 - 35299866
Alignment:
Q  31 tctaagggtatgtttggattgacttatttgagcttatctaccgacataagttttgtgaaac 91  Q
    ||||||||  ||||||||||||||||||||||||||||||  ||||| ||||||| |||||    
T  35299926 tctaagggcctgtttggattgacttatttgagcttatctattgacatgagttttgagaaac 35299866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 32 - 88
Target Start/End: Complemental strand, 41419479 - 41419423
Alignment:
Q  32 ctaagggtatgtttggattgacttatttgagcttatctaccgacataagttttgtga 88  Q
    ||||| || |||||||||||||||||||||||| |||||| ||||||| ||||||||    
T  41419479 ctaagtgtttgtttggattgacttatttgagctaatctactgacataaattttgtga 41419423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 32 - 88
Target Start/End: Complemental strand, 41534598 - 41534542
Alignment:
Q  32 ctaagggtatgtttggattgacttatttgagcttatctaccgacataagttttgtga 88  Q
    ||||| || |||||||||||||||||||||||| |||||| ||||||| ||||||||    
T  41534598 ctaagtgtttgtttggattgacttatttgagctaatctactgacataaattttgtga 41534542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 32 - 71
Target Start/End: Complemental strand, 14932456 - 14932417
Alignment:
Q  32 ctaagggtatgtttggattgacttatttgagcttatctac 71  Q
    ||||| ||||||||||||||||||||||||||||||||||    
T  14932456 ctaagagtatgtttggattgacttatttgagcttatctac 14932417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 42 - 88
Target Start/End: Complemental strand, 9107240 - 9107194
Alignment:
Q  42 gtttggattgacttatttgagcttatctaccgacataagttttgtga 88  Q
    ||||||||||||||||||||| |||||||  ||||||||||||||||    
T  9107240 gtttggattgacttatttgagtttatctagtgacataagttttgtga 9107194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 43 - 88
Target Start/End: Complemental strand, 7674796 - 7674751
Alignment:
Q  43 tttggattgacttatttgagcttatctaccgacataagttttgtga 88  Q
    ||||||||| |||||||||||||||||||| || ||||||||||||    
T  7674796 tttggattggcttatttgagcttatctacctacttaagttttgtga 7674751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 31 - 88
Target Start/End: Original strand, 7705907 - 7705964
Alignment:
Q  31 tctaagggtatgtttggattgacttatttgagcttatctaccgacataagttttgtga 88  Q
    ||||||||  ||||||||||||||||||||||| |||||||   ||||||||||||||    
T  7705907 tctaagggcctgtttggattgacttatttgagcatatctactagcataagttttgtga 7705964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 33 - 70
Target Start/End: Complemental strand, 9174975 - 9174938
Alignment:
Q  33 taagggtatgtttggattgacttatttgagcttatcta 70  Q
    |||||| |||||||||||||||||||||||||||||||    
T  9174975 taagggcatgtttggattgacttatttgagcttatcta 9174938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 44 - 88
Target Start/End: Complemental strand, 11064814 - 11064770
Alignment:
Q  44 ttggattgacttatttgagcttatctaccgacataagttttgtga 88  Q
    ||||||||| ||||||||| ||||||||| |||||||||||||||    
T  11064814 ttggattgatttatttgagtttatctaccaacataagttttgtga 11064770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 41 - 223
Target Start/End: Original strand, 16937802 - 16937986
Alignment:
Q  41 tgtttggattgacttatttgagcttatctaccgacataagttttgtgaaaccattttggagaatttacgaaaacaac--atgacaattcgcaaaagnnnn 138  Q
    ||||||||||| |||||||||||||||||||   |||||||||||||| |   ||| | |||| ||| ||||||| |  ||||||| |  || |||        
T  16937802 tgtttggattggcttatttgagcttatctactagcataagttttgtgagagtgtttggaagaacttatgaaaacagcttatgacaaatttcataagcttt 16937901  T
Q  139 nnncagcttatttttgtaatttttctaatgtagcttataaaaagaacttataggatgtagaaaagcaatttaactttattttatc 223  Q
       |||||||||||  ||| || || ||| |||| |||||||| ||||||||| || || |||| ||||||||| ||||||||||    
T  16937902 tttcagcttattttcctaagttctccaatatagcgtataaaaacaacttatagcatatacaaaaacaatttaacgttattttatc 16937986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 44 - 84
Target Start/End: Original strand, 22209746 - 22209786
Alignment:
Q  44 ttggattgacttatttgagcttatctaccgacataagtttt 84  Q
    |||||||||||||||||||||||||||| | ||||||||||    
T  22209746 ttggattgacttatttgagcttatctactggcataagtttt 22209786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 41 - 80
Target Start/End: Original strand, 499650 - 499689
Alignment:
Q  41 tgtttggattgacttatttgagcttatctaccgacataag 80  Q
    |||||||||||||||||||||||||| |||| ||||||||    
T  499650 tgtttggattgacttatttgagcttacctactgacataag 499689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 41 - 88
Target Start/End: Original strand, 3932595 - 3932642
Alignment:
Q  41 tgtttggattgacttatttgagcttatctaccgacataagttttgtga 88  Q
    |||||||||||||| ||||||||||||||| | ||||||| |||||||    
T  3932595 tgtttggattgactaatttgagcttatctaacaacataagctttgtga 3932642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 41 - 88
Target Start/End: Complemental strand, 10640104 - 10640057
Alignment:
Q  41 tgtttggattgacttatttgagcttatctaccgacataagttttgtga 88  Q
    ||||||||||  |||||||||| |||||||| ||||||||||||||||    
T  10640104 tgtttggattagcttatttgagtttatctactgacataagttttgtga 10640057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 49 - 88
Target Start/End: Complemental strand, 12425716 - 12425677
Alignment:
Q  49 ttgacttatttgagcttatctaccgacataagttttgtga 88  Q
    ||||||||||||||||||||||| | ||||||||||||||    
T  12425716 ttgacttatttgagcttatctactgtcataagttttgtga 12425677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 41 - 79
Target Start/End: Complemental strand, 17369354 - 17369316
Alignment:
Q  41 tgtttggattgacttatttgagcttatctaccgacataa 79  Q
    ||||||||||||||||||||| ||||||||| |||||||    
T  17369354 tgtttggattgacttatttgaacttatctactgacataa 17369316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 41 - 83
Target Start/End: Complemental strand, 32010096 - 32010054
Alignment:
Q  41 tgtttggattgacttatttgagcttatctaccgacataagttt 83  Q
    |||||||||||||||||||||| ||||||||  ||||||||||    
T  32010096 tgtttggattgacttatttgagtttatctactcacataagttt 32010054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 41 - 79
Target Start/End: Original strand, 36796626 - 36796664
Alignment:
Q  41 tgtttggattgacttatttgagcttatctaccgacataa 79  Q
    ||||||||||||||||||||||||||||||  |||||||    
T  36796626 tgtttggattgacttatttgagcttatctaatgacataa 36796664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 33 - 71
Target Start/End: Complemental strand, 42646829 - 42646791
Alignment:
Q  33 taagggtatgtttggattgacttatttgagcttatctac 71  Q
    ||||||| |||||||||||||||| ||||||||||||||    
T  42646829 taagggtctgtttggattgacttacttgagcttatctac 42646791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 49 - 86
Target Start/End: Complemental strand, 4625872 - 4625835
Alignment:
Q  49 ttgacttatttgagcttatctaccgacataagttttgt 86  Q
    ||||||||||||||||||||||| || |||||||||||    
T  4625872 ttgacttatttgagcttatctacggaaataagttttgt 4625835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 43 - 88
Target Start/End: Complemental strand, 6096696 - 6096651
Alignment:
Q  43 tttggattgacttatttgagcttatctaccgacataagttttgtga 88  Q
    ||||||||||| ||||||| ||||||||| | ||||||||||||||    
T  6096696 tttggattgacgtatttgaacttatctactggcataagttttgtga 6096651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 45 - 86
Target Start/End: Original strand, 9202671 - 9202712
Alignment:
Q  45 tggattgacttatttgagcttatctaccgacataagttttgt 86  Q
    ||||||||||||||||||||||||| | | ||||||||||||    
T  9202671 tggattgacttatttgagcttatctcctggcataagttttgt 9202712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #28
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 41 - 86
Target Start/End: Complemental strand, 32942745 - 32942700
Alignment:
Q  41 tgtttggattgacttatttgagcttatctaccgacataagttttgt 86  Q
    |||||||||||||||||  |||||| ||||| ||||||||||||||    
T  32942745 tgtttggattgacttatacgagcttttctactgacataagttttgt 32942700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #29
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 40 - 113
Target Start/End: Original strand, 42582606 - 42582679
Alignment:
Q  40 atgtttggattgacttatttgagcttatctaccgacataagttttgtgaaaccattttggagaatttacgaaaa 113  Q
    |||||||||||||||||||||||  ||||||  || |||||||||||||  |  |||||||||| ||| |||||    
T  42582606 atgtttggattgacttatttgagggtatctaatgatataagttttgtgaggctgttttggagaacttaagaaaa 42582679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #30
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 33 - 69
Target Start/End: Original strand, 8651263 - 8651299
Alignment:
Q  33 taagggtatgtttggattgacttatttgagcttatct 69  Q
    |||||| |||||||||||| |||||||||||||||||    
T  8651263 taagggcatgtttggattgccttatttgagcttatct 8651299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #31
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 40 - 88
Target Start/End: Complemental strand, 11700314 - 11700266
Alignment:
Q  40 atgtttggattgacttatttgagcttatctaccgacataagttttgtga 88  Q
    |||||||||||  |||||||||||||||| || | ||||||||||||||    
T  11700314 atgtttggatttgcttatttgagcttatccactggcataagttttgtga 11700266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #32
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 41 - 117
Target Start/End: Original strand, 12857624 - 12857700
Alignment:
Q  41 tgtttggattgacttatttgagcttatctaccgacataagttttgtgaaaccattttggagaatttacgaaaacaac 117  Q
    |||||||||||  ||||||||||| |||||  ||| |||||||||||||||  ||  |||||| ||| |||||||||    
T  12857624 tgtttggattggtttatttgagctcatctattgacgtaagttttgtgaaactgttccggagaacttatgaaaacaac 12857700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #33
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 39 - 71
Target Start/End: Complemental strand, 14257601 - 14257569
Alignment:
Q  39 tatgtttggattgacttatttgagcttatctac 71  Q
    ||||||||||||||||||||||| |||||||||    
T  14257601 tatgtttggattgacttatttgaacttatctac 14257569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #34
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 43 - 79
Target Start/End: Original strand, 14706205 - 14706241
Alignment:
Q  43 tttggattgacttatttgagcttatctaccgacataa 79  Q
    |||||||||||||||||||||||| |||| |||||||    
T  14706205 tttggattgacttatttgagcttacctactgacataa 14706241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #35
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 53 - 113
Target Start/End: Complemental strand, 15015982 - 15015922
Alignment:
Q  53 cttatttgagcttatctaccgacataagttttgtgaaaccattttggagaatttacgaaaa 113  Q
    ||||||||||||||||||| |||||||| ||||||| ||  ||| |||||| ||| |||||    
T  15015982 cttatttgagcttatctactgacataagctttgtgagactgtttgggagaacttatgaaaa 15015922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #36
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 41 - 81
Target Start/End: Complemental strand, 32197884 - 32197844
Alignment:
Q  41 tgtttggattgacttatttgagcttatctaccgacataagt 81  Q
    ||||||||||||||| |||||| |||||||| |||||||||    
T  32197884 tgtttggattgacttttttgagtttatctactgacataagt 32197844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #37
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 42 - 70
Target Start/End: Complemental strand, 35963379 - 35963351
Alignment:
Q  42 gtttggattgacttatttgagcttatcta 70  Q
    |||||||||||||||||||||||||||||    
T  35963379 gtttggattgacttatttgagcttatcta 35963351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #38
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 41 - 117
Target Start/End: Complemental strand, 41535532 - 41535456
Alignment:
Q  41 tgtttggattgacttatttgagcttatctaccgacataagttttgtgaaaccattttggagaatttacgaaaacaac 117  Q
    |||| |||||| ||||||| |||||||||||  | || |||||||||||||  ||| |||||| ||| |||||||||    
T  41535532 tgttcggattggcttatttaagcttatctacttatatcagttttgtgaaacagtttgggagaacttatgaaaacaac 41535456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #39
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 41 - 77
Target Start/End: Complemental strand, 42647041 - 42647005
Alignment:
Q  41 tgtttggattgacttatttgagcttatctaccgacat 77  Q
    ||||||||||| ||||||||||||||||||| |||||    
T  42647041 tgtttggattggcttatttgagcttatctactgacat 42647005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 45; Significance: 9e-17; HSPs: 36)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 41 - 117
Target Start/End: Complemental strand, 27317530 - 27317454
Alignment:
Q  41 tgtttggattgacttatttgagcttatctaccgacataagttttgtgaaaccattttggagaatttacgaaaacaac 117  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||| ||  |||  ||||| ||| |||||||||    
T  27317530 tgtttggattgacttatttgagcttatctaccgacataagttttatgagactgtttgagagaacttatgaaaacaac 27317454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 41 - 117
Target Start/End: Complemental strand, 4607076 - 4607000
Alignment:
Q  41 tgtttggattgacttatttgagcttatctaccgacataagttttgtgaaaccattttggagaatttacgaaaacaac 117  Q
    ||||||||||| |||||||||||||||||||| | ||||||||||||| || |||| |||||| ||  |||||||||    
T  4607076 tgtttggattggcttatttgagcttatctaccaatataagttttgtgagactatttgggagaacttgtgaaaacaac 4607000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 41 - 117
Target Start/End: Complemental strand, 18179100 - 18179024
Alignment:
Q  41 tgtttggattgacttatttgagcttatctaccgacataagttttgtgaaaccattttggagaatttacgaaaacaac 117  Q
    |||||||||||||||||||||||||||||||  ||||||||||||||| |||  |   ||||| |||||||||||||    
T  18179100 tgtttggattgacttatttgagcttatctactaacataagttttgtgagaccgctcaagagaacttacgaaaacaac 18179024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 41 - 113
Target Start/End: Complemental strand, 30331902 - 30331830
Alignment:
Q  41 tgtttggattgacttatttgagcttatctaccgacataagttttgtgaaaccattttggagaatttacgaaaa 113  Q
    ||||||||||||||||||| ||||||||||| |||||||||||||||| ||  ||| |||||| ||| |||||    
T  30331902 tgtttggattgacttatttcagcttatctactgacataagttttgtgagactgtttgggagaacttatgaaaa 30331830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 41 - 91
Target Start/End: Complemental strand, 15305825 - 15305775
Alignment:
Q  41 tgtttggattgacttatttgagcttatctaccgacataagttttgtgaaac 91  Q
    ||||||||||| ||||||||||||||||||  |||||||||||||||||||    
T  15305825 tgtttggattggcttatttgagcttatctattgacataagttttgtgaaac 15305775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 35 - 91
Target Start/End: Complemental strand, 2416470 - 2416414
Alignment:
Q  35 agggtatgtttggattgacttatttgagcttatctaccgacataagttttgtgaaac 91  Q
    |||| |||||| |||||||||||||||| ||||||||  ||||||||||||||||||    
T  2416470 agggcatgtttagattgacttatttgagtttatctactaacataagttttgtgaaac 2416414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 32 - 88
Target Start/End: Complemental strand, 3312237 - 3312181
Alignment:
Q  32 ctaagggtatgtttggattgacttatttgagcttatctaccgacataagttttgtga 88  Q
    |||||||  ||||||||||| ||||||||||||||||||| ||| ||||||||||||    
T  3312237 ctaagggcttgtttggattggcttatttgagcttatctactgacgtaagttttgtga 3312181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 43 - 115
Target Start/End: Complemental strand, 42419942 - 42419870
Alignment:
Q  43 tttggattgacttatttgagcttatctaccgacataagttttgtgaaaccattttggagaatttacgaaaaca 115  Q
    |||||||||||||||||||| |||||| | |||||||||||| ||| ||  ||| |||||| |||||||||||    
T  42419942 tttggattgacttatttgagtttatcttctgacataagttttttgagactgtttgggagaacttacgaaaaca 42419870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 41 - 84
Target Start/End: Complemental strand, 31744449 - 31744406
Alignment:
Q  41 tgtttggattgacttatttgagcttatctaccgacataagtttt 84  Q
    ||||||||||| |||||||| |||||||||||||||||||||||    
T  31744449 tgtttggattggcttatttgggcttatctaccgacataagtttt 31744406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 33 - 88
Target Start/End: Original strand, 39073613 - 39073668
Alignment:
Q  33 taagggtatgtttggattgacttatttgagcttatctaccgacataagttttgtga 88  Q
    ||||||||||||| |||||| ||||||||| | |||||||||||||| ||||||||    
T  39073613 taagggtatgtttagattgatttatttgagttcatctaccgacataatttttgtga 39073668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 39 - 80
Target Start/End: Complemental strand, 22878251 - 22878210
Alignment:
Q  39 tatgtttggattgacttatttgagcttatctaccgacataag 80  Q
    |||||||||||||||||||||||||||||| || ||||||||    
T  22878251 tatgtttggattgacttatttgagcttatccactgacataag 22878210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 43 - 80
Target Start/End: Original strand, 28803451 - 28803488
Alignment:
Q  43 tttggattgacttatttgagcttatctaccgacataag 80  Q
    ||||||||||||||||||||||||||||||| ||||||    
T  28803451 tttggattgacttatttgagcttatctaccggcataag 28803488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 35 - 71
Target Start/End: Original strand, 6772446 - 6772482
Alignment:
Q  35 agggtatgtttggattgacttatttgagcttatctac 71  Q
    |||| ||||||||||||||||||||||||||||||||    
T  6772446 agggcatgtttggattgacttatttgagcttatctac 6772482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 32 - 88
Target Start/End: Original strand, 7928208 - 7928264
Alignment:
Q  32 ctaagggtatgtttggattgacttatttgagcttatctaccgacataagttttgtga 88  Q
    |||||||  ||||||||||| ||||||||||||||||||  |||||||||| |||||    
T  7928208 ctaagggcctgtttggattggcttatttgagcttatctattgacataagttgtgtga 7928264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 39 - 79
Target Start/End: Original strand, 18525158 - 18525198
Alignment:
Q  39 tatgtttggattgacttatttgagcttatctaccgacataa 79  Q
    |||||||| |||||||||||||||||||||||| |||||||    
T  18525158 tatgtttgaattgacttatttgagcttatctacagacataa 18525198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 35 - 115
Target Start/End: Original strand, 23974406 - 23974486
Alignment:
Q  35 agggtatgtttggattgacttatttgagcttatctaccgacataagttttgtgaaaccattttggagaatttacgaaaaca 115  Q
    |||||||||||||||||||||||||| | |||||||| ||||| || || |||| |   |||||||||| ||| |||||||    
T  23974406 agggtatgtttggattgacttatttgggtttatctactgacatgagattagtgagattgttttggagaacttatgaaaaca 23974486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 41 - 72
Target Start/End: Original strand, 3078527 - 3078558
Alignment:
Q  41 tgtttggattgacttatttgagcttatctacc 72  Q
    ||||||||||||||||||||||||||||||||    
T  3078527 tgtttggattgacttatttgagcttatctacc 3078558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 41 - 88
Target Start/End: Original strand, 10619139 - 10619186
Alignment:
Q  41 tgtttggattgacttatttgagcttatctaccgacataagttttgtga 88  Q
    |||||||||||||| ||||||| |||||||| |||| |||||||||||    
T  10619139 tgtttggattgactcatttgagtttatctactgacacaagttttgtga 10619186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 41 - 80
Target Start/End: Original strand, 15370242 - 15370281
Alignment:
Q  41 tgtttggattgacttatttgagcttatctaccgacataag 80  Q
    ||||||||||||||||||||||||||||||| | ||||||    
T  15370242 tgtttggattgacttatttgagcttatctactggcataag 15370281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 40 - 115
Target Start/End: Complemental strand, 20952507 - 20952432
Alignment:
Q  40 atgtttggattgacttatttgagcttatctaccgacataagttttgtgaaaccattttggagaatttacgaaaaca 115  Q
    |||||||||||||||||||||||||||| ||| | || ||||||||| | || ||||  ||||| ||| |||||||    
T  20952507 atgtttggattgacttatttgagcttatatactggcaaaagttttgttagactatttaagagaacttatgaaaaca 20952432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 41 - 88
Target Start/End: Complemental strand, 26202179 - 26202132
Alignment:
Q  41 tgtttggattgacttatttgagcttatctaccgacataagttttgtga 88  Q
    |||||||||| |||||||||| ||||||| | ||||||||||||||||    
T  26202179 tgtttggattaacttatttgaacttatctgctgacataagttttgtga 26202132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 44 - 91
Target Start/End: Original strand, 31561664 - 31561711
Alignment:
Q  44 ttggattgacttatttgagcttatctaccgacataagttttgtgaaac 91  Q
    ||||||||||||||||||| ||||||||  ||||||||||||| ||||    
T  31561664 ttggattgacttatttgagattatctactaacataagttttgtaaaac 31561711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 41 - 108
Target Start/End: Complemental strand, 44119933 - 44119866
Alignment:
Q  41 tgtttggattgacttatttgagcttatctaccgacataagttttgtgaaaccattttggagaatttac 108  Q
    ||||||||||| ||||||||||||||  | | |||||||||||||||||||  |||  ||||||||||    
T  44119933 tgtttggattggcttatttgagcttacatgctgacataagttttgtgaaactgtttgagagaatttac 44119866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 47 - 81
Target Start/End: Complemental strand, 26548598 - 26548564
Alignment:
Q  47 gattgacttatttgagcttatctaccgacataagt 81  Q
    ||||| |||||||||||||||||||||||||||||    
T  26548598 gattggcttatttgagcttatctaccgacataagt 26548564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 33 - 71
Target Start/End: Original strand, 35329729 - 35329767
Alignment:
Q  33 taagggtatgtttggattgacttatttgagcttatctac 71  Q
    ||||||| ||||||||||||||||| |||||||||||||    
T  35329729 taagggtgtgtttggattgacttatgtgagcttatctac 35329767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 41 - 79
Target Start/End: Original strand, 40837356 - 40837394
Alignment:
Q  41 tgtttggattgacttatttgagcttatctaccgacataa 79  Q
    ||||||||||| ||||||||||||||||||| |||||||    
T  40837356 tgtttggattggcttatttgagcttatctactgacataa 40837394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 169 - 223
Target Start/End: Complemental strand, 41407096 - 41407042
Alignment:
Q  169 tagcttataaaaagaacttataggatgtagaaaagcaatttaactttattttatc 223  Q
    |||||||| |||| ||||||||| || || ||||||| |||||||||||||||||    
T  41407096 tagcttatgaaaacaacttatagaatatacaaaagcagtttaactttattttatc 41407042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 41 - 70
Target Start/End: Complemental strand, 750885 - 750856
Alignment:
Q  41 tgtttggattgacttatttgagcttatcta 70  Q
    ||||||||||||||||||||||||||||||    
T  750885 tgtttggattgacttatttgagcttatcta 750856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 35 - 80
Target Start/End: Complemental strand, 4350847 - 4350802
Alignment:
Q  35 agggtatgtttggattgacttatttgagcttatctaccgacataag 80  Q
    ||||| ||||||||||| ||||||||||||| ||||| ||||||||    
T  4350847 agggtttgtttggattggcttatttgagcttctctactgacataag 4350802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #30
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 41 - 117
Target Start/End: Original strand, 26143561 - 26143635
Alignment:
Q  41 tgtttggattgacttatttgagcttatctaccgacataagttttgtgaaaccattttggagaatttacgaaaacaac 117  Q
    ||||||||||| ||| ||||||||||||||| ||||||| |||  ||| ||  ||| |||||| |||||||||||||    
T  26143561 tgtttggattggcttgtttgagcttatctactgacataaattt--tgagactgtttgggagaacttacgaaaacaac 26143635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #31
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 47 - 80
Target Start/End: Complemental strand, 35810012 - 35809979
Alignment:
Q  47 gattgacttatttgagcttatctaccgacataag 80  Q
    ||||||||||||||||||||||||||| ||||||    
T  35810012 gattgacttatttgagcttatctaccggcataag 35809979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #32
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 42 - 79
Target Start/End: Original strand, 40059381 - 40059418
Alignment:
Q  42 gtttggattgacttatttgagcttatctaccgacataa 79  Q
    ||||||||||||||||||||| |||||||| |||||||    
T  40059381 gtttggattgacttatttgagtttatctactgacataa 40059418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #33
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 42 - 79
Target Start/End: Original strand, 40085281 - 40085318
Alignment:
Q  42 gtttggattgacttatttgagcttatctaccgacataa 79  Q
    ||||||||||||||||||||| |||||||| |||||||    
T  40085281 gtttggattgacttatttgagtttatctactgacataa 40085318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #34
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 43 - 88
Target Start/End: Complemental strand, 44590173 - 44590128
Alignment:
Q  43 tttggattgacttatttgagcttatctaccgacataagttttgtga 88  Q
    ||||||||| |||||||||| |||||||  ||||||||||||||||    
T  44590173 tttggattggcttatttgagtttatctatagacataagttttgtga 44590128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #35
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 35 - 79
Target Start/End: Original strand, 2964722 - 2964766
Alignment:
Q  35 agggtatgtttggattgacttatttgagcttatctaccgacataa 79  Q
    |||| ||||||||||| |||||||||| ||||||||||| |||||    
T  2964722 agggcatgtttggattaacttatttgaacttatctaccggcataa 2964766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #36
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 39 - 71
Target Start/End: Complemental strand, 13867031 - 13866999
Alignment:
Q  39 tatgtttggattgacttatttgagcttatctac 71  Q
    ||||||||||||||| |||||||||||||||||    
T  13867031 tatgtttggattgacctatttgagcttatctac 13866999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 44; Significance: 4e-16; HSPs: 26)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 41 - 88
Target Start/End: Complemental strand, 38602478 - 38602431
Alignment:
Q  41 tgtttggattgacttatttgagcttatctaccgacataagttttgtga 88  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||    
T  38602478 tgtttggattgacttatttgagcttatctactgacataagttttgtga 38602431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 41 - 115
Target Start/End: Original strand, 30251373 - 30251447
Alignment:
Q  41 tgtttggattgacttatttgagcttatctaccgacataagttttgtgaaaccattttggagaatttacgaaaaca 115  Q
    ||||||||||| ||||||||||||||||||| ||||||||||| |||| ||  ||| |||||| |||||||||||    
T  30251373 tgtttggattggcttatttgagcttatctactgacataagtttcgtgagactgtttgggagaacttacgaaaaca 30251447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 32 - 231
Target Start/End: Original strand, 10758167 - 10758367
Alignment:
Q  32 ctaagggtatgtttggattgacttatttgagcttatctaccgacataagttttgtgaaaccattttggagaatttacgaaaacaac--atgacaattcgc 129  Q
    ||||||| ||||||| |||||||||||||| ||||||| |  ||||||||||||||| ||  |||   |||||||| ||||||| |  |||||||||  |    
T  10758167 ctaagggcatgtttgaattgacttatttgaacttatctgctaacataagttttgtgagactgtttgatagaatttatgaaaacagcttatgacaattttc 10758266  T
Q  130 aaaagnnnnnnncagcttatttttgtaatttttctaatgtagcttataaaaagaacttataggatgtagaaaagcaatttaactttattttatcctttgc 229  Q
    |||||       |||||| ||||  |||  || ||||| ||||||||||| | ||||||||| || || |||| |||||||||||||||||||  |||||    
T  10758267 aaaagcttttttcagcttgttttcataa-gttgctaatatagcttataaagacaacttatagcatatacaaaaacaatttaactttattttatgatttgc 10758365  T
Q  230 ta 231  Q
    ||    
T  10758366 ta 10758367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 43 - 115
Target Start/End: Original strand, 43717855 - 43717927
Alignment:
Q  43 tttggattgacttatttgagcttatctaccgacataagttttgtgaaaccattttggagaatttacgaaaaca 115  Q
    ||||||||| ||||||||||||||||||  |||||||||||||||| || |||| |||||| ||| |||||||    
T  43717855 tttggattggcttatttgagcttatctattgacataagttttgtgagactatttgggagaacttatgaaaaca 43717927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 36 - 115
Target Start/End: Original strand, 36963268 - 36963347
Alignment:
Q  36 gggtatgtttggattgacttatttgagcttatctaccgacataagttttgtgaaaccattttggagaatttacgaaaaca 115  Q
    |||| ||||||||||| |||||||||||| |||||| | |||||||||||||| ||  ||| |||||| |||| ||||||    
T  36963268 gggtctgtttggattggcttatttgagctaatctactggcataagttttgtgagactgtttgggagaacttacaaaaaca 36963347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 40 - 88
Target Start/End: Complemental strand, 1096642 - 1096594
Alignment:
Q  40 atgtttggattgacttatttgagcttatctaccgacataagttttgtga 88  Q
    ||||||||||||||||||||||| |||| ||  ||||||||||||||||    
T  1096642 atgtttggattgacttatttgagtttatttagtgacataagttttgtga 1096594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 33 - 69
Target Start/End: Complemental strand, 5088279 - 5088243
Alignment:
Q  33 taagggtatgtttggattgacttatttgagcttatct 69  Q
    ||||||||||||||||||||||||||| |||||||||    
T  5088279 taagggtatgtttggattgacttatttcagcttatct 5088243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 33 - 105
Target Start/End: Original strand, 29818855 - 29818927
Alignment:
Q  33 taagggtatgtttggattgacttatttgagcttatctaccgacataagttttgtgaaaccattttggagaatt 105  Q
    |||||| |||||||||||| | |||||||||||||||||   |||||||||||||| ||  ||| ||||||||    
T  29818855 taagggcatgtttggattggcatatttgagcttatctactatcataagttttgtgagactgtttcggagaatt 29818927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 29 - 80
Target Start/End: Original strand, 2487915 - 2487966
Alignment:
Q  29 aatctaagggtatgtttggattgacttatttgagcttatctaccgacataag 80  Q
    |||||||||| |||||||||||| |||||||||| | |||||| ||||||||    
T  2487915 aatctaagggcatgtttggattggcttatttgagttcatctactgacataag 2487966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 41 - 88
Target Start/End: Original strand, 9130238 - 9130285
Alignment:
Q  41 tgtttggattgacttatttgagcttatctaccgacataagttttgtga 88  Q
    ||||||||||  ||||||||||||||||||| | ||||||||||||||    
T  9130238 tgtttggattagcttatttgagcttatctactggcataagttttgtga 9130285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 41 - 88
Target Start/End: Complemental strand, 32213270 - 32213223
Alignment:
Q  41 tgtttggattgacttatttgagcttatctaccgacataagttttgtga 88  Q
    ||||||||||| ||||||||||||||| ||| || |||||||||||||    
T  32213270 tgtttggattgtcttatttgagcttatatactgatataagttttgtga 32213223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 41 - 88
Target Start/End: Original strand, 35534532 - 35534579
Alignment:
Q  41 tgtttggattgacttatttgagcttatctaccgacataagttttgtga 88  Q
    ||||| || ||||||||||||||||||||||  |||||||||||||||    
T  35534532 tgtttagaatgacttatttgagcttatctactaacataagttttgtga 35534579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 43 - 117
Target Start/End: Original strand, 39551130 - 39551205
Alignment:
Q  43 tttggattgacttatttgagcttatctaccgacataag-ttttgtgaaaccattttggagaatttacgaaaacaac 117  Q
    |||||||||||||||||||| |||||||| || |||||  ||||||||||  ||| |||||||||| | |||||||    
T  39551130 tttggattgacttatttgagattatctacggatataagcatttgtgaaactgtttgggagaatttatggaaacaac 39551205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 41 - 79
Target Start/End: Complemental strand, 2606200 - 2606162
Alignment:
Q  41 tgtttggattgacttatttgagcttatctaccgacataa 79  Q
    |||||||||||||||||| |||||||||||| |||||||    
T  2606200 tgtttggattgacttattcgagcttatctactgacataa 2606162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 42 - 80
Target Start/End: Complemental strand, 4560652 - 4560614
Alignment:
Q  42 gtttggattgacttatttgagcttatctaccgacataag 80  Q
    |||||||||||||||||||||||||||||  ||||||||    
T  4560652 gtttggattgacttatttgagcttatctattgacataag 4560614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 41 - 115
Target Start/End: Complemental strand, 15180690 - 15180617
Alignment:
Q  41 tgtttggattgacttatttgagcttatctaccgacataagttttgtgaaaccattttggagaatttacgaaaaca 115  Q
    ||||||||||| |||||||||| |||||||| | |||||||||| ||| | | |||||||||||||  |||||||    
T  15180690 tgtttggattggcttatttgagtttatctactgccataagttttatgaga-ctttttggagaatttctgaaaaca 15180617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 33 - 79
Target Start/End: Original strand, 29417522 - 29417568
Alignment:
Q  33 taagggtatgtttggattgacttatttgagcttatctaccgacataa 79  Q
    |||||||||||||| |||| ||||||| |||||||| ||||||||||    
T  29417522 taagggtatgtttgaattggcttattttagcttatcgaccgacataa 29417568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 41 - 83
Target Start/End: Original strand, 35374371 - 35374413
Alignment:
Q  41 tgtttggattgacttatttgagcttatctaccgacataagttt 83  Q
    |||||||||||| ||||||||||||||||||| ||| ||||||    
T  35374371 tgtttggattgagttatttgagcttatctacccacacaagttt 35374413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 42 - 88
Target Start/End: Original strand, 40859703 - 40859749
Alignment:
Q  42 gtttggattgacttatttgagcttatctaccgacataagttttgtga 88  Q
    |||||||||| ||||||||||||||||| |  |||||||||||||||    
T  40859703 gtttggattggcttatttgagcttatctgctaacataagttttgtga 40859749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 41 - 87
Target Start/End: Original strand, 42893409 - 42893455
Alignment:
Q  41 tgtttggattgacttatttgagcttatctaccgacataagttttgtg 87  Q
    |||||||||| ||||||||||| |||||||||| ||||| |||||||    
T  42893409 tgtttggattaacttatttgagtttatctaccggcataatttttgtg 42893455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 43 - 88
Target Start/End: Original strand, 12496993 - 12497038
Alignment:
Q  43 tttggattgacttatttgagcttatctaccgacataagttttgtga 88  Q
    |||||||||| |||||||||||||||| | | ||||||||||||||    
T  12496993 tttggattgatttatttgagcttatctcctggcataagttttgtga 12497038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 50 - 79
Target Start/End: Original strand, 23996557 - 23996586
Alignment:
Q  50 tgacttatttgagcttatctaccgacataa 79  Q
    ||||||||||||||||||||||||||||||    
T  23996557 tgacttatttgagcttatctaccgacataa 23996586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 32 - 88
Target Start/End: Original strand, 1057987 - 1058043
Alignment:
Q  32 ctaagggtatgtttggattgacttatttgagcttatctaccgacataagttttgtga 88  Q
    ||||||| | ||||| | || |||||||||||||||||||  |||||||||||||||    
T  1057987 ctaagggcaagtttgaactggcttatttgagcttatctacttacataagttttgtga 1058043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 31 - 71
Target Start/End: Complemental strand, 10727505 - 10727465
Alignment:
Q  31 tctaagggtatgtttggattgacttatttgagcttatctac 71  Q
    |||| |||| |||||||||||||||||||||| ||||||||    
T  10727505 tctatgggtctgtttggattgacttatttgagtttatctac 10727465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 32 - 80
Target Start/End: Original strand, 35928640 - 35928688
Alignment:
Q  32 ctaagggtatgtttggattgacttatttgagcttatctaccgacataag 80  Q
    ||||| || ||||||||||| ||||||| ||||||||||| ||||||||    
T  35928640 ctaagagtctgtttggattgtcttattttagcttatctactgacataag 35928688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 41 - 117
Target Start/End: Complemental strand, 41589737 - 41589661
Alignment:
Q  41 tgtttggattgacttatttgagcttatctaccgacataagttttgtgaaaccattttggagaatttacgaaaacaac 117  Q
    ||||| |||||  |||||||||||| ||||| |||||||| ||| ||| ||  |||||||||| ||| |||||||||    
T  41589737 tgtttagattggtttatttgagcttgtctactgacataagctttttgagactgttttggagaacttatgaaaacaac 41589661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 26)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 35 - 88
Target Start/End: Original strand, 21405067 - 21405120
Alignment:
Q  35 agggtatgtttggattgacttatttgagcttatctaccgacataagttttgtga 88  Q
    ||||| ||||||||||||||||||||||||||| ||| ||||||||||||||||    
T  21405067 agggtctgtttggattgacttatttgagcttatatactgacataagttttgtga 21405120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 35 - 117
Target Start/End: Original strand, 10645298 - 10645380
Alignment:
Q  35 agggtatgtttggattgacttatttgagcttatctaccgacataagttttgtgaaaccattttggagaatttacgaaaacaac 117  Q
    ||||||||||||||||| || ||||||| |||||||  |||||||||||||| | ||  ||| |||||| ||| |||||||||    
T  10645298 agggtatgtttggattggctaatttgaggttatctaatgacataagttttgtaagactgtttgggagaacttatgaaaacaac 10645380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 41 - 86
Target Start/End: Original strand, 35069531 - 35069576
Alignment:
Q  41 tgtttggattgacttatttgagcttatctaccgacataagttttgt 86  Q
    |||||| |||| ||||||||||||||||||| ||||||||||||||    
T  35069531 tgtttgtattggcttatttgagcttatctactgacataagttttgt 35069576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 40 - 84
Target Start/End: Complemental strand, 4163305 - 4163261
Alignment:
Q  40 atgtttggattgacttatttgagcttatctaccgacataagtttt 84  Q
    |||||||||||| ||||||||||||||||||| | ||||||||||    
T  4163305 atgtttggattggcttatttgagcttatctactggcataagtttt 4163261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 40 - 84
Target Start/End: Complemental strand, 4224926 - 4224882
Alignment:
Q  40 atgtttggattgacttatttgagcttatctaccgacataagtttt 84  Q
    |||||||||||| ||||||||||||||||||| | ||||||||||    
T  4224926 atgtttggattggcttatttgagcttatctactggcataagtttt 4224882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 39 - 71
Target Start/End: Original strand, 31776189 - 31776221
Alignment:
Q  39 tatgtttggattgacttatttgagcttatctac 71  Q
    |||||||||||||||||||||||||||||||||    
T  31776189 tatgtttggattgacttatttgagcttatctac 31776221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 34 - 78
Target Start/End: Complemental strand, 33027750 - 33027706
Alignment:
Q  34 aagggtatgtttggattgacttatttgagcttatctaccgacata 78  Q
    ||||| ||||||||||||| |||||||||||||||||| ||||||    
T  33027750 aagggcatgtttggattgatttatttgagcttatctactgacata 33027706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 40 - 115
Target Start/End: Complemental strand, 33089658 - 33089582
Alignment:
Q  40 atgtttggattgacttatttgagcttatctaccgacataagt-tttgtgaaaccattttggagaatttacgaaaaca 115  Q
    |||||||| ||||||||||||||||||||||| |||||| || ||||||| || ||||  ||||| ||| |||||||    
T  33089658 atgtttgggttgacttatttgagcttatctactgacatatgtatttgtgagactatttcagagaacttatgaaaaca 33089582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 54 - 117
Target Start/End: Complemental strand, 2455397 - 2455334
Alignment:
Q  54 ttatttgagcttatctaccgacataagttttgtgaaaccattttggagaatttacgaaaacaac 117  Q
    ||||||||||||||||||  |||||||||| ||||||| ||||  ||||| ||| |||||||||    
T  2455397 ttatttgagcttatctacaaacataagtttggtgaaactatttgagagaacttatgaaaacaac 2455334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 41 - 80
Target Start/End: Complemental strand, 2457092 - 2457053
Alignment:
Q  41 tgtttggattgacttatttgagcttatctaccgacataag 80  Q
    ||||||||||| |||||||||| |||||||||||||||||    
T  2457092 tgtttggattggcttatttgagattatctaccgacataag 2457053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 33 - 88
Target Start/End: Complemental strand, 6536771 - 6536716
Alignment:
Q  33 taagggtatgtttggattgacttatttgagcttatctaccgacataagttttgtga 88  Q
    |||||| ||||||||||| | ||||||||| ||| |||| ||||||||||||||||    
T  6536771 taagggcatgtttggattaaattatttgagtttacctactgacataagttttgtga 6536716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 36 - 87
Target Start/End: Complemental strand, 18612462 - 18612411
Alignment:
Q  36 gggtatgtttggattgacttatttgagcttatctaccgacataagttttgtg 87  Q
    |||| |||||||||| |||| ||||||||| || ||||||||||||||||||    
T  18612462 gggtttgtttggattaacttttttgagcttttcaaccgacataagttttgtg 18612411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 41 - 87
Target Start/End: Original strand, 835180 - 835226
Alignment:
Q  41 tgtttggattgacttatttgagcttatctaccgacataagttttgtg 87  Q
    ||||||||||| |||||||||||||||||||   |||||||||||||    
T  835180 tgtttggattgccttatttgagcttatctactagcataagttttgtg 835226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 41 - 71
Target Start/End: Original strand, 9202904 - 9202934
Alignment:
Q  41 tgtttggattgacttatttgagcttatctac 71  Q
    |||||||||||||||||||||||||||||||    
T  9202904 tgtttggattgacttatttgagcttatctac 9202934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 169 - 231
Target Start/End: Complemental strand, 18076217 - 18076155
Alignment:
Q  169 tagcttataaaaagaacttataggatgtagaaaagcaatttaactttattttatcctttgcta 231  Q
    ||||||||||||| ||||||||| |  ||||||| ||||||||| ||||||| || |||||||    
T  18076217 tagcttataaaaacaacttatagcaattagaaaaacaatttaaccttattttctcttttgcta 18076155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 169 - 227
Target Start/End: Complemental strand, 24626316 - 24626258
Alignment:
Q  169 tagcttataaaaagaacttataggatgtagaaaagcaatttaactttattttatccttt 227  Q
    |||||||| |||| ||||||||| || || |||| |||||||||||| |||||||||||    
T  24626316 tagcttatgaaaacaacttatagaatatacaaaaacaatttaactttgttttatccttt 24626258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 41 - 103
Target Start/End: Complemental strand, 24982856 - 24982794
Alignment:
Q  41 tgtttggattgacttatttgagcttatctaccgacataagttttgtgaaaccattttggagaa 103  Q
    |||||||||||||| ||| || |||||||||  ||||||||||||||| ||  ||||||||||    
T  24982856 tgtttggattgactaattagatcttatctactaacataagttttgtgagactgttttggagaa 24982794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 33 - 67
Target Start/End: Complemental strand, 29249552 - 29249518
Alignment:
Q  33 taagggtatgtttggattgacttatttgagcttat 67  Q
    |||||| ||||||||||||||||||||||||||||    
T  29249552 taagggcatgtttggattgacttatttgagcttat 29249518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 41 - 87
Target Start/End: Original strand, 34404645 - 34404691
Alignment:
Q  41 tgtttggattgacttatttgagcttatctaccgacataagttttgtg 87  Q
    |||||||||| ||||||||||| ||||| || |||||||||||||||    
T  34404645 tgtttggatttacttatttgagtttatcaactgacataagttttgtg 34404691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 39 - 88
Target Start/End: Original strand, 32729060 - 32729109
Alignment:
Q  39 tatgtttggattgacttatttgagcttatctaccgacataagttttgtga 88  Q
    ||||| |||||||||||||||||| ||||||||  || ||||||||||||    
T  32729060 tatgtgtggattgacttatttgagtttatctacaaacttaagttttgtga 32729109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 43 - 88
Target Start/End: Complemental strand, 35071643 - 35071598
Alignment:
Q  43 tttggattgacttatttgagcttatctaccgacataagttttgtga 88  Q
    ||||||||||||||||| ||||||| ||| | ||||||||||||||    
T  35071643 tttggattgacttatttcagcttatatactgccataagttttgtga 35071598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 48 - 80
Target Start/End: Complemental strand, 2455954 - 2455922
Alignment:
Q  48 attgacttatttgagcttatctaccgacataag 80  Q
    |||||||||||||||||||||||||| ||||||    
T  2455954 attgacttatttgagcttatctaccggcataag 2455922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 34 - 70
Target Start/End: Original strand, 10452333 - 10452369
Alignment:
Q  34 aagggtatgtttggattgacttatttgagcttatcta 70  Q
    ||||| |||||||||||| ||||||||||||||||||    
T  10452333 aagggcatgtttggattggcttatttgagcttatcta 10452369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 43 - 71
Target Start/End: Complemental strand, 12111116 - 12111088
Alignment:
Q  43 tttggattgacttatttgagcttatctac 71  Q
    |||||||||||||||||||||||||||||    
T  12111116 tttggattgacttatttgagcttatctac 12111088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 41 - 73
Target Start/End: Original strand, 19800376 - 19800408
Alignment:
Q  41 tgtttggattgacttatttgagcttatctaccg 73  Q
    |||||||||||| ||||||||||||||||||||    
T  19800376 tgtttggattgatttatttgagcttatctaccg 19800408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #26
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 41 - 81
Target Start/End: Original strand, 30536884 - 30536924
Alignment:
Q  41 tgtttggattgacttatttgagcttatctaccgacataagt 81  Q
    |||||||||||||||||||||| ||||||||  ||||||||    
T  30536884 tgtttggattgacttatttgagtttatctacttacataagt 30536924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 39)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 42 - 115
Target Start/End: Complemental strand, 584196 - 584123
Alignment:
Q  42 gtttggattgacttatttgagcttatctaccgacataagttttgtgaaaccattttggagaatttacgaaaaca 115  Q
    ||||||||||||||||||||||||||||||   |||||||| ||||| ||  |||||||||||||| |||||||    
T  584196 gtttggattgacttatttgagcttatctactagcataagttctgtgagactgttttggagaatttatgaaaaca 584123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 42 - 115
Target Start/End: Original strand, 24085258 - 24085331
Alignment:
Q  42 gtttggattgacttatttgagcttatctaccgacataagttttgtgaaaccattttggagaatttacgaaaaca 115  Q
    |||||||||| ||||||||||||||||||||| |||||||||||||| ||   ||||||||| ||| |||||||    
T  24085258 gtttggattggcttatttgagcttatctaccggcataagttttgtgagactggtttggagaacttatgaaaaca 24085331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 37 - 114
Target Start/End: Original strand, 34610721 - 34610798
Alignment:
Q  37 ggtatgtttggattgacttatttgagcttatctaccgacataagttttgtgaaaccattttggagaatttacgaaaac 114  Q
    |||||||||| || ||||||||||||||||||||| ||||||||||||||  ||| |||| |||||| ||| ||||||    
T  34610721 ggtatgtttgtatggacttatttgagcttatctactgacataagttttgtacaactatttgggagaacttatgaaaac 34610798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 41 - 88
Target Start/End: Original strand, 16072960 - 16073007
Alignment:
Q  41 tgtttggattgacttatttgagcttatctaccgacataagttttgtga 88  Q
    ||||||||||||||||||||||||||||||  ||||||||||||||||    
T  16072960 tgtttggattgacttatttgagcttatctaatgacataagttttgtga 16073007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 41 - 88
Target Start/End: Original strand, 25447164 - 25447211
Alignment:
Q  41 tgtttggattgacttatttgagcttatctaccgacataagttttgtga 88  Q
    |||||||||||||||||||||| |||||||| ||||||||||||||||    
T  25447164 tgtttggattgacttatttgagtttatctactgacataagttttgtga 25447211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 144 - 227
Target Start/End: Original strand, 36631075 - 36631158
Alignment:
Q  144 gcttatttttgtaatttttctaatgtagcttataaaaagaacttataggatgtagaaaagcaatttaactttattttatccttt 227  Q
    |||||||||  ||| || || ||| ||||| ||||||| ||||||||| ||||| |||| ||||||||||||| ||||||||||    
T  36631075 gcttattttcataagttctccaatatagctcataaaaacaacttatagcatgtacaaaaacaatttaactttactttatccttt 36631158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 41 - 115
Target Start/End: Original strand, 42799885 - 42799960
Alignment:
Q  41 tgtttggattgacttatttgagctt-atctaccgacataagttttgtgaaaccattttggagaatttacgaaaaca 115  Q
    ||||||||||| ||||||||||||| |||||| |||||| ||||||||||||  ||| |||||| ||| |||||||    
T  42799885 tgtttggattggcttatttgagctttatctactgacatatgttttgtgaaactctttgggagaacttatgaaaaca 42799960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 40 - 78
Target Start/End: Original strand, 26990143 - 26990181
Alignment:
Q  40 atgtttggattgacttatttgagcttatctaccgacata 78  Q
    |||||||||||||||||||||||||||||||| ||||||    
T  26990143 atgtttggattgacttatttgagcttatctactgacata 26990181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 35 - 77
Target Start/End: Original strand, 31615473 - 31615515
Alignment:
Q  35 agggtatgtttggattgacttatttgagcttatctaccgacat 77  Q
    |||||||||||||||||||||||||||| |||||||| |||||    
T  31615473 agggtatgtttggattgacttatttgagtttatctacggacat 31615515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 43 - 88
Target Start/End: Original strand, 18405752 - 18405797
Alignment:
Q  43 tttggattgacttatttgagcttatctaccgacataagttttgtga 88  Q
    |||||||||  |||||||||||||||||| ||||||||||||||||    
T  18405752 tttggattggtttatttgagcttatctactgacataagttttgtga 18405797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 43 - 84
Target Start/End: Complemental strand, 26911740 - 26911699
Alignment:
Q  43 tttggattgacttatttgagcttatctaccgacataagtttt 84  Q
    |||||||||||||||||||| |||||||| ||||||||||||    
T  26911740 tttggattgacttatttgagtttatctactgacataagtttt 26911699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 35 - 76
Target Start/End: Complemental strand, 32663795 - 32663754
Alignment:
Q  35 agggtatgtttggattgacttatttgagcttatctaccgaca 76  Q
    ||||| ||||||||||| ||||||||||||||||||||||||    
T  32663795 agggtctgtttggattggcttatttgagcttatctaccgaca 32663754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 44 - 85
Target Start/End: Original strand, 33405114 - 33405155
Alignment:
Q  44 ttggattgacttatttgagcttatctaccgacataagttttg 85  Q
    ||||||||||||||||||| |||||||| |||||||||||||    
T  33405114 ttggattgacttatttgagtttatctactgacataagttttg 33405155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 42 - 115
Target Start/End: Original strand, 51929277 - 51929350
Alignment:
Q  42 gtttggattgacttatttgagcttatctaccgacataagttttgtgaaaccattttggagaatttacgaaaaca 115  Q
    |||||||||||||||||||| ||||| ||| | |||||||||||||| || ||||  ||||||||  |||||||    
T  51929277 gtttggattgacttatttgaccttatttactggcataagttttgtgatactatttgagagaatttctgaaaaca 51929350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 35 - 79
Target Start/End: Original strand, 20210841 - 20210885
Alignment:
Q  35 agggtatgtttggattgacttatttgagcttatctaccgacataa 79  Q
    |||||||||||||||||| ||||||||| |||||||| |||||||    
T  20210841 agggtatgtttggattgatttatttgaggttatctactgacataa 20210885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 37 - 80
Target Start/End: Original strand, 2080998 - 2081041
Alignment:
Q  37 ggtatgtttggattgacttatttgagcttatctaccgacataag 80  Q
    ||||||||||||||||||||||||| ||||||||  ||||||||    
T  2080998 ggtatgtttggattgacttatttgaacttatctattgacataag 2081041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 41 - 88
Target Start/End: Original strand, 20170633 - 20170680
Alignment:
Q  41 tgtttggattgacttatttgagcttatctaccgacataagttttgtga 88  Q
    ||||||||||| ||||||||||||||||||  ||||||||||| ||||    
T  20170633 tgtttggattggcttatttgagcttatctagtgacataagtttagtga 20170680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 41 - 84
Target Start/End: Original strand, 24684741 - 24684784
Alignment:
Q  41 tgtttggattgacttatttgagcttatctaccgacataagtttt 84  Q
    |||||||||| |||||||||||||||||||| | ||||||||||    
T  24684741 tgtttggattaacttatttgagcttatctactggcataagtttt 24684784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 37 - 84
Target Start/End: Complemental strand, 32582892 - 32582845
Alignment:
Q  37 ggtatgtttggattgacttatttgagcttatctaccgacataagtttt 84  Q
    |||||||||||||||||||||||||| ||||||||   ||||||||||    
T  32582892 ggtatgtttggattgacttatttgagtttatctactaccataagtttt 32582845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 40 - 71
Target Start/End: Complemental strand, 46407894 - 46407863
Alignment:
Q  40 atgtttggattgacttatttgagcttatctac 71  Q
    ||||||||||||||||||||||||||||||||    
T  46407894 atgtttggattgacttatttgagcttatctac 46407863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 41 - 88
Target Start/End: Complemental strand, 46478818 - 46478771
Alignment:
Q  41 tgtttggattgacttatttgagcttatctaccgacataagttttgtga 88  Q
    ||||||||||||||||||||||| |||||||  || ||||||||||||    
T  46478818 tgtttggattgacttatttgagcatatctactaacgtaagttttgtga 46478771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 35 - 69
Target Start/End: Original strand, 2100092 - 2100126
Alignment:
Q  35 agggtatgtttggattgacttatttgagcttatct 69  Q
    ||||| |||||||||||||||||||||||||||||    
T  2100092 agggtctgtttggattgacttatttgagcttatct 2100126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 165 - 231
Target Start/End: Complemental strand, 5331318 - 5331252
Alignment:
Q  165 aatgtagcttataaaaagaacttataggatgtagaaaagcaatttaactttattttatcctttgcta 231  Q
    ||||||||||||||||| ||||||||| |  ||||| | ||||||||| ||||||| || |||||||    
T  5331318 aatgtagcttataaaaacaacttatagcaattagaagaacaatttaacgttattttctcttttgcta 5331252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 41 - 91
Target Start/End: Original strand, 9832674 - 9832724
Alignment:
Q  41 tgtttggattgacttatttgagcttatctaccgacataagttttgtgaaac 91  Q
    ||||| ||||||||||||||||||||| ||  |||||||||||||| ||||    
T  9832674 tgtttagattgacttatttgagcttatttattgacataagttttgtcaaac 9832724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 38 - 80
Target Start/End: Original strand, 21872211 - 21872253
Alignment:
Q  38 gtatgtttggattgacttatttgagcttatctaccgacataag 80  Q
    ||||||||||||| |||||||||| ||||||||| ||||||||    
T  21872211 gtatgtttggattaacttatttgatcttatctactgacataag 21872253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 165 - 231
Target Start/End: Original strand, 29520524 - 29520590
Alignment:
Q  165 aatgtagcttataaaaagaacttataggatgtagaaaagcaatttaactttattttatcctttgcta 231  Q
    ||||||||||||||||| ||||||||| |  ||||| | ||||||||| ||||||| || |||||||    
T  29520524 aatgtagcttataaaaacaacttatagcaattagaagaacaatttaacgttattttctcttttgcta 29520590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 43 - 81
Target Start/End: Complemental strand, 46407655 - 46407617
Alignment:
Q  43 tttggattgacttatttgagcttatctaccgacataagt 81  Q
    ||||||||| || ||||||||||||||||||||||||||    
T  46407655 tttggattggctaatttgagcttatctaccgacataagt 46407617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 53 - 86
Target Start/End: Complemental strand, 5448583 - 5448550
Alignment:
Q  53 cttatttgagcttatctaccgacataagttttgt 86  Q
    ||||||||||||||||||| ||||||||||||||    
T  5448583 cttatttgagcttatctactgacataagttttgt 5448550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 142 - 223
Target Start/End: Complemental strand, 30443941 - 30443860
Alignment:
Q  142 cagcttatttttgtaatttttctaatgtagcttataaaaagaacttataggatgtagaaaagcaatttaactttattttatc 223  Q
    |||||||||||  ||| || || ||| ||| ||||||||| | ||||||| || || |||||||||||||||| ||||||||    
T  30443941 cagcttattttcataagttctccaatatagtttataaaaacagcttatagcatatacaaaagcaatttaacttcattttatc 30443860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 142 - 227
Target Start/End: Original strand, 35959478 - 35959563
Alignment:
Q  142 cagcttatttttgtaatttttctaatgtagcttataaaaagaacttataggatgtagaaaagcaatttaactttattttatccttt 227  Q
    |||||||||||   || || |||||| ||||||||| ||| |||||| || || || ||||  |||||||||||||||||||||||    
T  35959478 cagcttattttcaaaaattctctaatatagcttatagaaacaacttacagcatatacaaaaataatttaactttattttatccttt 35959563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 35 - 88
Target Start/End: Complemental strand, 39980886 - 39980833
Alignment:
Q  35 agggtatgtttggattgacttatttgagcttatctaccgacataagttttgtga 88  Q
    ||||| ||||||||||| ||| |||||||||||||||   ||||||||||||||    
T  39980886 agggtctgtttggattggcttgtttgagcttatctactagcataagttttgtga 39980833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 41 - 113
Target Start/End: Complemental strand, 47132467 - 47132397
Alignment:
Q  41 tgtttggattgacttatttgagcttatctaccgacataagttttgtgaaaccattttggagaatttacgaaaa 113  Q
    ||||||||||| ||||||||||||||||||| | |  ||||||||||| ||  |||||||||| ||| |||||    
T  47132467 tgtttggattggcttatttgagcttatctactggc--aagttttgtgagactgttttggagaacttatgaaaa 47132397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 41 - 70
Target Start/End: Complemental strand, 51929892 - 51929863
Alignment:
Q  41 tgtttggattgacttatttgagcttatcta 70  Q
    ||||||||||||||||||||||||||||||    
T  51929892 tgtttggattgacttatttgagcttatcta 51929863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 42 - 70
Target Start/End: Complemental strand, 20669499 - 20669471
Alignment:
Q  42 gtttggattgacttatttgagcttatcta 70  Q
    |||||||||||||||||||||||||||||    
T  20669499 gtttggattgacttatttgagcttatcta 20669471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #35
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 43 - 87
Target Start/End: Complemental strand, 21367816 - 21367772
Alignment:
Q  43 tttggattgacttatttgagcttatctaccgacataagttttgtg 87  Q
    ||||||||| |||||||||| |||||||||  |||||||||||||    
T  21367816 tttggattggcttatttgagattatctaccagcataagttttgtg 21367772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #36
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 41 - 85
Target Start/End: Original strand, 34235012 - 34235056
Alignment:
Q  41 tgtttggattgacttatttgagcttatctaccgacataagttttg 85  Q
    |||||| ||||||||||| ||||||||||||  ||||||||||||    
T  34235012 tgtttgtattgacttattcgagcttatctactaacataagttttg 34235056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #37
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 41 - 117
Target Start/End: Original strand, 42747701 - 42747777
Alignment:
Q  41 tgtttggattgacttatttgagcttatctaccgacataagttttgtgaaaccattttggagaatttacgaaaacaac 117  Q
    ||||||| |||||||||||||| ||||||||   ||||||| |||||| ||  |||| ||||| ||| |||||||||    
T  42747701 tgtttggtttgacttatttgagtttatctacttccataagtattgtgagactgtttttgagaacttatgaaaacaac 42747777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #38
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 34 - 78
Target Start/End: Original strand, 45432865 - 45432909
Alignment:
Q  34 aagggtatgtttggattgacttatttgagcttatctaccgacata 78  Q
    |||||| ||||||||||||||||||| | ||||||||| ||||||    
T  45432865 aagggtctgtttggattgacttattttaacttatctactgacata 45432909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #39
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 53 - 117
Target Start/End: Original strand, 46778122 - 46778186
Alignment:
Q  53 cttatttgagcttatctaccgacataagttttgtgaaaccattttggagaatttacgaaaacaac 117  Q
    ||||||||||||||| ||  | ||||| |||||||||||| ||| |||||| ||| |||||||||    
T  46778122 cttatttgagcttatttagtggcataaattttgtgaaaccgtttgggagaacttatgaaaacaac 46778186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 43)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 41 - 117
Target Start/End: Original strand, 50644174 - 50644250
Alignment:
Q  41 tgtttggattgacttatttgagcttatctaccgacataagttttgtgaaaccattttggagaatttacgaaaacaac 117  Q
    |||||||||||||||||||||||||||||||  ||||| ||||||||| ||  ||| |||||| ||| |||||||||    
T  50644174 tgtttggattgacttatttgagcttatctactaacatatgttttgtgagactgtttgggagaacttatgaaaacaac 50644250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 162 - 227
Target Start/End: Original strand, 14576695 - 14576760
Alignment:
Q  162 tctaatgtagcttataaaaagaacttataggatgtagaaaagcaatttaactttattttatccttt 227  Q
    |||||| ||||||||||||| || |||||| || || |||| ||||||||||||||||||||||||    
T  14576695 tctaatatagcttataaaaaaaaattatagcatatacaaaaacaatttaactttattttatccttt 14576760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 42 - 107
Target Start/End: Complemental strand, 24334345 - 24334280
Alignment:
Q  42 gtttggattgacttatttgagcttatctaccgacataagttttgtgaaaccattttggagaattta 107  Q
    ||||||||||||||||||||| ||||| || |||||||||||||||| || ||||  |||||||||    
T  24334345 gtttggattgacttatttgagtttatcaacggacataagttttgtgagactatttgagagaattta 24334280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 42 - 91
Target Start/End: Original strand, 39976130 - 39976179
Alignment:
Q  42 gtttggattgacttatttgagcttatctaccgacataagttttgtgaaac 91  Q
    ||||||| ||||||||||||| |||||||| |||||||||||||||||||    
T  39976130 gtttggactgacttatttgagattatctactgacataagttttgtgaaac 39976179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 47 - 103
Target Start/End: Original strand, 38116002 - 38116058
Alignment:
Q  47 gattgacttatttgagcttatctaccgacataagttttgtgaaaccattttggagaa 103  Q
    ||||||||||||||||||||||||| ||| |||||||||||| ||  ||||||||||    
T  38116002 gattgacttatttgagcttatctactgacgtaagttttgtgagacggttttggagaa 38116058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 41 - 80
Target Start/End: Complemental strand, 6292643 - 6292604
Alignment:
Q  41 tgtttggattgacttatttgagcttatctaccgacataag 80  Q
    ||||||||||||||||||||||||||||||| ||||||||    
T  6292643 tgtttggattgacttatttgagcttatctactgacataag 6292604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 41 - 88
Target Start/End: Original strand, 33204313 - 33204360
Alignment:
Q  41 tgtttggattgacttatttgagcttatctaccgacataagttttgtga 88  Q
    ||||| ||| ||||||||||||||||||||| ||||||||||||||||    
T  33204313 tgtttagatcgacttatttgagcttatctactgacataagttttgtga 33204360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 41 - 115
Target Start/End: Complemental strand, 2295247 - 2295173
Alignment:
Q  41 tgtttggattgacttatttgagcttatctaccgacataagttttgtgaaaccattttggagaatttacgaaaaca 115  Q
    |||||| |||| ||||||||||||||||||| | |||||||||||||| ||  ||| |||||| ||| |||||||    
T  2295247 tgtttgaattggcttatttgagcttatctactggcataagttttgtgagactgtttgggagaacttatgaaaaca 2295173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 41 - 103
Target Start/End: Complemental strand, 2295342 - 2295280
Alignment:
Q  41 tgtttggattgacttatttgagcttatctaccgacataagttttgtgaaaccattttggagaa 103  Q
    ||||||||||| ||||||||||||||||||| ||| |||||||| ||| || |||| ||||||    
T  2295342 tgtttggattggcttatttgagcttatctactgacttaagttttctgagactatttgggagaa 2295280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 41 - 103
Target Start/End: Original strand, 14385712 - 14385774
Alignment:
Q  41 tgtttggattgacttatttgagcttatctaccgacataagttttgtgaaaccattttggagaa 103  Q
    |||| |||||| ||||||||||||||||||| | ||||||||| |||| || |||||||||||    
T  14385712 tgttcggattggcttatttgagcttatctactggcataagtttcgtgagactattttggagaa 14385774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 43 - 88
Target Start/End: Complemental strand, 1432664 - 1432619
Alignment:
Q  43 tttggattgacttatttgagcttatctaccgacataagttttgtga 88  Q
    ||||||||| |||||||||||||||| |||||||||| ||||||||    
T  1432664 tttggattggcttatttgagcttatccaccgacataaattttgtga 1432619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 41 - 114
Target Start/End: Complemental strand, 36872879 - 36872806
Alignment:
Q  41 tgtttggattgacttatttgagcttatctaccgacataagttttgtgaaaccattttggagaatttacgaaaac 114  Q
    ||||||||||| ||||||| |||||| ||| | |||||||||||| || ||  |||||||||||||| ||||||    
T  36872879 tgtttggattggcttatttaagcttaactaacaacataagttttgcgagactgttttggagaatttatgaaaac 36872806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 41 - 82
Target Start/End: Complemental strand, 41505825 - 41505784
Alignment:
Q  41 tgtttggattgacttatttgagcttatctaccgacataagtt 82  Q
    ||||||||||| ||||||||||||||||||| ||||||||||    
T  41505825 tgtttggattggcttatttgagcttatctactgacataagtt 41505784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 41 - 117
Target Start/End: Original strand, 3233934 - 3234010
Alignment:
Q  41 tgtttggattgacttatttgagcttatctaccgacataagttttgtgaaaccattttggagaatttacgaaaacaac 117  Q
    ||||||||||||||||||||||||||||||  | | |||||||||||| ||  ||  |||||| ||| |||||||||    
T  3233934 tgtttggattgacttatttgagcttatctagtgccgtaagttttgtgagactgttagggagaacttatgaaaacaac 3234010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 45 - 231
Target Start/End: Complemental strand, 13810145 - 13809957
Alignment:
Q  45 tggattgacttatttgagcttatctaccgacataagttttgtgaaaccattttggagaatttacgaaaacaac--atgacaattcgcaaaagnnnnnnnc 142  Q
    ||||||| |||||||| |||||||||| ||| |||||||||||| ||  |||| ||||| ||| ||| |||    |||||||||  ||||||            
T  13810145 tggattggcttatttgtgcttatctactgacgtaagttttgtgagactcttttagagaacttatgaatacagtttatgacaattttcaaaagtttttctt 13810046  T
Q  143 agcttatttttgtaatttttctaatgtagcttataaaaagaacttataggatgtagaaaagcaatttaactttattttatcctttgcta 231  Q
    ||||||||||   || || |||||| ||| ||||||||| ||  ||||| || || |||| |||||||||||||||||||| |||||||    
T  13810045 agcttattttcacaagttctctaatatagtttataaaaacaatatatagcatatacaaaaacaatttaactttattttatcttttgcta 13809957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 40 - 79
Target Start/End: Original strand, 7217992 - 7218031
Alignment:
Q  40 atgtttggattgacttatttgagcttatctaccgacataa 79  Q
    |||||||||||||||||||| ||||||||||||| |||||    
T  7217992 atgtttggattgacttatttaagcttatctaccggcataa 7218031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 41 - 88
Target Start/End: Original strand, 27146174 - 27146221
Alignment:
Q  41 tgtttggattgacttatttgagcttatctaccgacataagttttgtga 88  Q
    |||||||||||||| |||||||||||||||  | ||||||||||||||    
T  27146174 tgtttggattgactgatttgagcttatctattggcataagttttgtga 27146221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 40 - 115
Target Start/End: Original strand, 37617383 - 37617458
Alignment:
Q  40 atgtttggattgacttatttgagcttatctaccgacataagttttgtgaaaccattttggagaatttacgaaaaca 115  Q
    ||||||||||||||||||||||| |||||||  | | |||||||||||| ||  |||  ||||||||| |||||||    
T  37617383 atgtttggattgacttatttgagtttatctattgccgtaagttttgtgagactgtttgcgagaatttatgaaaaca 37617458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 41 - 71
Target Start/End: Original strand, 3319865 - 3319895
Alignment:
Q  41 tgtttggattgacttatttgagcttatctac 71  Q
    |||||||||||||||||||||||||||||||    
T  3319865 tgtttggattgacttatttgagcttatctac 3319895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 35 - 77
Target Start/End: Complemental strand, 5152032 - 5151990
Alignment:
Q  35 agggtatgtttggattgacttatttgagcttatctaccgacat 77  Q
    ||||||||||||||||||| ||||||||||||| ||| |||||    
T  5152032 agggtatgtttggattgacctatttgagcttatgtactgacat 5151990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 54 - 88
Target Start/End: Complemental strand, 7028440 - 7028406
Alignment:
Q  54 ttatttgagcttatctaccgacataagttttgtga 88  Q
    |||||||||||||||| ||||||||||||||||||    
T  7028440 ttatttgagcttatctgccgacataagttttgtga 7028406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 41 - 87
Target Start/End: Complemental strand, 7069430 - 7069384
Alignment:
Q  41 tgtttggattgacttatttgagcttatctaccgacataagttttgtg 87  Q
    |||||||||||||||||||||||||||| ||  || |||||||||||    
T  7069430 tgtttggattgacttatttgagcttatcaactaacgtaagttttgtg 7069384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 44 - 86
Target Start/End: Complemental strand, 15784465 - 15784423
Alignment:
Q  44 ttggattgacttatttgagcttatctaccgacataagttttgt 86  Q
    |||||| |||||||||||||||||||||  |||||||||||||    
T  15784465 ttggatcgacttatttgagcttatctactaacataagttttgt 15784423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 162 - 231
Target Start/End: Complemental strand, 28043659 - 28043589
Alignment:
Q  162 tctaatgtagcttataaaaagaacttataggatgta-gaaaagcaatttaactttattttatcctttgcta 231  Q
    |||||| | |||| |||||||||||| ||| || || ||||||||| |||||||||||||| |||||||||    
T  28043659 tctaatatggcttttaaaaagaacttttagcatatacgaaaagcaacttaactttattttaccctttgcta 28043589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 40 - 69
Target Start/End: Original strand, 5886910 - 5886939
Alignment:
Q  40 atgtttggattgacttatttgagcttatct 69  Q
    ||||||||||||||||||||||||||||||    
T  5886910 atgtttggattgacttatttgagcttatct 5886939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 58 - 103
Target Start/End: Original strand, 7107448 - 7107493
Alignment:
Q  58 ttgagcttatctaccgacataagttttgtgaaaccattttggagaa 103  Q
    |||||||||||||| |||||||||||||||| || |||| ||||||    
T  7107448 ttgagcttatctactgacataagttttgtgatactatttgggagaa 7107493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 170 - 231
Target Start/End: Complemental strand, 33186286 - 33186225
Alignment:
Q  170 agcttataaaaagaacttataggatgtagaaaagcaatttaactttattttatcctttgcta 231  Q
    |||||||||||| ||||||||| || || || |  ||||||||||| |||||||||||||||    
T  33186286 agcttataaaaacaacttatagcatatacaagaaaaatttaactttcttttatcctttgcta 33186225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 43 - 80
Target Start/End: Original strand, 34303178 - 34303215
Alignment:
Q  43 tttggattgacttatttgagcttatctaccgacataag 80  Q
    |||| |||||||| ||||||||||||||||||||||||    
T  34303178 tttgaattgacttgtttgagcttatctaccgacataag 34303215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 33 - 70
Target Start/End: Complemental strand, 34952361 - 34952324
Alignment:
Q  33 taagggtatgtttggattgacttatttgagcttatcta 70  Q
    ||||||| ||||||||||| ||||||||||||||||||    
T  34952361 taagggtctgtttggattggcttatttgagcttatcta 34952324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 43 - 80
Target Start/End: Original strand, 51929383 - 51929420
Alignment:
Q  43 tttggattgacttatttgagcttatctaccgacataag 80  Q
    ||||||||||||| ||||||||||||||| ||||||||    
T  51929383 tttggattgacttttttgagcttatctactgacataag 51929420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 41 - 113
Target Start/End: Complemental strand, 473314 - 473242
Alignment:
Q  41 tgtttggattgacttatttgagcttatctaccgacataagttttgtgaaaccattttggagaatttacgaaaa 113  Q
    ||||| ||||| ||||||||||| ||||||| | |||||||| ||||||||  ||| |||||| ||| |||||    
T  473314 tgtttagattggcttatttgagcctatctactggcataagttctgtgaaacattttgggagaacttatgaaaa 473242  T

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Target: chr1; HSP #32
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 37 - 69
Target Start/End: Complemental strand, 601195 - 601163
Alignment:
Q  37 ggtatgtttggattgacttatttgagcttatct 69  Q
    |||||||||||||||||||| ||||||||||||    
T  601195 ggtatgtttggattgacttacttgagcttatct 601163  T

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Target: chr1; HSP #33
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 33 - 65
Target Start/End: Original strand, 3887543 - 3887575
Alignment:
Q  33 taagggtatgtttggattgacttatttgagctt 65  Q
    ||||||| |||||||||||||||||||||||||    
T  3887543 taagggtctgtttggattgacttatttgagctt 3887575  T

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Target: chr1; HSP #34
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 43 - 79
Target Start/End: Complemental strand, 5157221 - 5157185
Alignment:
Q  43 tttggattgacttatttgagcttatctaccgacataa 79  Q
    ||||||||||||||||||| ||||||||| |||||||    
T  5157221 tttggattgacttatttgaacttatctacggacataa 5157185  T

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Target: chr1; HSP #35
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 48 - 88
Target Start/End: Complemental strand, 6102297 - 6102257
Alignment:
Q  48 attgacttatttgagcttatctaccgacataagttttgtga 88  Q
    ||||||||||||||| |||||||||| ||||| ||||||||    
T  6102297 attgacttatttgagtttatctaccggcataaattttgtga 6102257  T

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Target: chr1; HSP #36
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 199 - 231
Target Start/End: Original strand, 9572187 - 9572219
Alignment:
Q  199 aaaagcaatttaactttattttatcctttgcta 231  Q
    ||||||||||||||||||||||||| |||||||    
T  9572187 aaaagcaatttaactttattttatcttttgcta 9572219  T

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Target: chr1; HSP #37
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 44 - 80
Target Start/End: Original strand, 10199330 - 10199366
Alignment:
Q  44 ttggattgacttatttgagcttatctaccgacataag 80  Q
    ||||||||||||||||||||||||||||  |||||||    
T  10199330 ttggattgacttatttgagcttatctactaacataag 10199366  T

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Target: chr1; HSP #38
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 41 - 77
Target Start/End: Original strand, 24460320 - 24460356
Alignment:
Q  41 tgtttggattgacttatttgagcttatctaccgacat 77  Q
    ||||||||||||||||||||| ||||||||| |||||    
T  24460320 tgtttggattgacttatttgaacttatctactgacat 24460356  T

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Target: chr1; HSP #39
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 166 - 230
Target Start/End: Complemental strand, 26678927 - 26678863
Alignment:
Q  166 atgtagcttataaaaagaacttataggatgtagaaaagcaatttaactttattttatcctttgct 230  Q
    |||||||||||||| | ||||||||| || || | || |||| ||||||||||||||| ||||||    
T  26678927 atgtagcttataaatacaacttatagcatttacataaacaatgtaactttattttatcttttgct 26678863  T

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Target: chr1; HSP #40
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 35 - 71
Target Start/End: Complemental strand, 26866470 - 26866434
Alignment:
Q  35 agggtatgtttggattgacttatttgagcttatctac 71  Q
    ||||| ||||||||||||||||||| |||||||||||    
T  26866470 agggtctgtttggattgacttatttcagcttatctac 26866434  T

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Target: chr1; HSP #41
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 43 - 79
Target Start/End: Original strand, 29793619 - 29793655
Alignment:
Q  43 tttggattgacttatttgagcttatctaccgacataa 79  Q
    |||| |||||||||||||||||||||||| |||||||    
T  29793619 tttgtattgacttatttgagcttatctactgacataa 29793655  T

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Target: chr1; HSP #42
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 162 - 222
Target Start/End: Original strand, 37517236 - 37517296
Alignment:
Q  162 tctaatgtagcttataaaaagaacttataggatgtagaaaagcaatttaactttattttat 222  Q
    |||||| |||||||| |||| ||||||||  || || |||| |||||||||||||||||||    
T  37517236 tctaatatagcttattaaaataacttataatatatacaaaaacaatttaactttattttat 37517296  T

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Target: chr1; HSP #43
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 32 - 68
Target Start/End: Original strand, 48748505 - 48748541
Alignment:
Q  32 ctaagggtatgtttggattgacttatttgagcttatc 68  Q
    ||||| ||||||||| |||||||||||||||||||||    
T  48748505 ctaagagtatgtttgaattgacttatttgagcttatc 48748541  T

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Target: scaffold0024 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 37 - 71
Target Start/End: Original strand, 21213 - 21247
Alignment:
Q  37 ggtatgtttggattgacttatttgagcttatctac 71  Q
    ||||||||||||||||||||| |||||||||||||    
T  21213 ggtatgtttggattgacttatctgagcttatctac 21247  T

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Target: scaffold0024; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 33 - 70
Target Start/End: Complemental strand, 59032 - 58995
Alignment:
Q  33 taagggtatgtttggattgacttatttgagcttatcta 70  Q
    ||||||||||||||||||||||||  ||||||||||||    
T  59032 taagggtatgtttggattgacttacatgagcttatcta 58995  T

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Target: scaffold0459 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0459
Description:

Target: scaffold0459; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 34 - 67
Target Start/End: Complemental strand, 6704 - 6671
Alignment:
Q  34 aagggtatgtttggattgacttatttgagcttat 67  Q
    |||||| |||||||||||||||||||||||||||    
T  6704 aagggtttgtttggattgacttatttgagcttat 6671  T

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Target: scaffold0366 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0366
Description:

Target: scaffold0366; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 34 - 67
Target Start/End: Complemental strand, 6702 - 6669
Alignment:
Q  34 aagggtatgtttggattgacttatttgagcttat 67  Q
    |||||| |||||||||||||||||||||||||||    
T  6702 aagggtttgtttggattgacttatttgagcttat 6669  T

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