View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1706_high_48 (Length: 238)

Name: NF1706_high_48
Description: NF1706
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1706_high_48
NF1706_high_48
[»] chr8 (2 HSPs)
chr8 (1-156)||(39166215-39166370)
chr8 (181-227)||(39166144-39166190)
[»] chr1 (2 HSPs)
chr1 (23-156)||(5539091-5539224)
chr1 (181-227)||(5539020-5539066)
[»] chr3 (2 HSPs)
chr3 (6-93)||(43963781-43963868)
chr3 (181-227)||(43963635-43963681)


Alignment Details
Target: chr8 (Bit Score: 152; Significance: 1e-80; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 152; E-Value: 1e-80
Query Start/End: Original strand, 1 - 156
Target Start/End: Complemental strand, 39166370 - 39166215
Alignment:
Q  1 cattccaggaatctaagaaaagcagaaatggaaaggctgcacactcagcatggtccaactatgatgatctaaatgagtatttttggtttgttttccttca 100  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39166370 cattccaggaatctaagaaaagcagaaatggaaaggcttcacactcagcatggtccaactatgatgatctaaatgagtatttttggtttgttttccttca 39166271  T
Q  101 gaattttattgctaaaattgacttggttcgtttcatttcgtcattcattacttgac 156  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39166270 gaattttattgctaaaattgacttggttcgtttcatttcgtcattcattacttgac 39166215  T

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Target: chr8; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 181 - 227
Target Start/End: Complemental strand, 39166190 - 39166144
Alignment:
Q  181 caggtcacttgattgcttttctcttggatggcctatgcgtgatgatg 227  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  39166190 caggtcacttgattgcttttctcttggatggcctatgcgtgatgatg 39166144  T

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Target: chr1 (Bit Score: 110; Significance: 1e-55; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 110; E-Value: 1e-55
Query Start/End: Original strand, 23 - 156
Target Start/End: Complemental strand, 5539224 - 5539091
Alignment:
Q  23 cagaaatggaaaggctgcacactcagcatggtccaactatgatgatctaaatgagtatttttggtttgttttccttcagaattttattgctaaaattgac 122  Q
    |||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  5539224 cagaaatggaaaggcttcacactcagcatggtgcaactatgatgatctaaatgagtatttttggtttgttttccttcagaattttattactaaaattgac 5539125  T
Q  123 ttggttcgtttcatttcgtcattcattacttgac 156  Q
    |||||| |||||||||| |||| |||||||||||    
T  5539124 ttggtttgtttcatttcatcatgcattacttgac 5539091  T

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Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 181 - 227
Target Start/End: Complemental strand, 5539066 - 5539020
Alignment:
Q  181 caggtcacttgattgcttttctcttggatggcctatgcgtgatgatg 227  Q
    ||||||||||||||||||||||||||||||||||||  |||||||||    
T  5539066 caggtcacttgattgcttttctcttggatggcctataggtgatgatg 5539020  T

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Target: chr3 (Bit Score: 44; Significance: 4e-16; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 6 - 93
Target Start/End: Complemental strand, 43963868 - 43963781
Alignment:
Q  6 caggaatctaagaaaagcagaaatggaaaggctgcacactcagcatggtccaactatgatgatctaaatgagtatttttggtttgttt 93  Q
    |||||| || |||||||||||||||||| |||| | |||||||| |||| ||| || |||||||||||||||||||| ||||| ||||    
T  43963868 caggaagctgagaaaagcagaaatggaatggctcctcactcagcctggtgcaattacgatgatctaaatgagtatttctggttagttt 43963781  T

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Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 181 - 227
Target Start/End: Complemental strand, 43963681 - 43963635
Alignment:
Q  181 caggtcacttgattgcttttctcttggatggcctatgcgtgatgatg 227  Q
    |||| ||| |||||||||||||||||||||||| |||||||||||||    
T  43963681 caggacacctgattgcttttctcttggatggcccatgcgtgatgatg 43963635  T

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