View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1706_high_49 (Length: 236)
Name: NF1706_high_49
Description: NF1706
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1706_high_49 |
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Alignment Details
Target: chr4 (Bit Score: 109; Significance: 6e-55; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 1 - 204
Target Start/End: Original strand, 43868289 - 43868492
Alignment:
| Q |
1 |
caattcattcaaaatcaatgtttataaccatagaaccaaatggaaaaagcaatgtagtaataataaaatgctaataaagaggtaataacaagtagcggtt |
100 |
Q |
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| T |
43868289 |
caattcattcaaaatcaatttttataaccatagaaccaaatgaaaaaagcaatgtagtaataataaaatgctagtaaagaggtaataacaagtatcggtt |
43868388 |
T |
|
| Q |
101 |
acccatgnnnnnnnnnaaaagaaagaagtctcccagtcccagatacaaatgttgtagtgatttaataaatagattaataaaatattggtccgtggcagta |
200 |
Q |
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| T |
43868389 |
acacatgtttttctttacaagaaagaagtctcccagtctcagttacacatgtttgatttatttaattaatagattaataaaatattggtctttgggagta |
43868488 |
T |
|
| Q |
201 |
aatg |
204 |
Q |
| |
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|||| |
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| T |
43868489 |
aatg |
43868492 |
T |
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