View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1706_high_7 (Length: 516)
Name: NF1706_high_7
Description: NF1706
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1706_high_7 |
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Alignment Details
Target: chr2 (Bit Score: 457; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 457; E-Value: 0
Query Start/End: Original strand, 18 - 506
Target Start/End: Original strand, 25544929 - 25545417
Alignment:
| Q |
18 |
ttagtatagcaaaaattggttatgaatcacttagcaatatattttattataatgcaacccttcagtgtgtatgagaaaatatcttgttggttttggcttt |
117 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||| |
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| T |
25544929 |
ttagtatagcaaaaattggttatgaatcacttagcaatatattttattataatgcaaccctacagtgtgtatgagaaaagatcttgttggttttggcttt |
25545028 |
T |
|
| Q |
118 |
gagtcaaaacattgaagttttggatagcgtagcagtatagcctctcgatttctgcatctatgttgttgatgtttcatagtttgtttcccaatctattttg |
217 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25545029 |
gagtcaaaacattgaagttttggatagcgtagcaatatagcctctcgatttctgcatctatgttgttgatgtttcatagtttgtttcccaatctattttg |
25545128 |
T |
|
| Q |
218 |
gttgagttggattatgccattgattccttcggttccttttctgtgtatctgctgctctctcatattcttgctgccatttggtcttttgtcgggttaacca |
317 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25545129 |
gttgagttggattatgccattgattccttcggttccttttctgtgtacctgctgctctctcatattcttgctgccatttggtcttttgtcgggttaacca |
25545228 |
T |
|
| Q |
318 |
tcggagttttactttgcagtttgcgtagaacaagctgtggattctaactagctcttggtgatagtattgattactttctaaagatttgtgttccttgaat |
417 |
Q |
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||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25545229 |
tcggagttttactttgcagtttgcggagaacaagctgtggattctaactagctcttggtgatagtattgattactttctaaagatttgtgttccttgaat |
25545328 |
T |
|
| Q |
418 |
gatatgccaaggagtctacaactctttgcatacccttatgttaattccataagtcgcagatacaactcttcatccctcatattcttcga |
506 |
Q |
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| T |
25545329 |
gatatgccaaggagtctacaactctttgcatacccttatgttaattccataagtcgcagatacaactcttaatccctcatttttttcga |
25545417 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 231; Significance: 1e-127; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 18 - 335
Target Start/End: Complemental strand, 1154811 - 1154496
Alignment:
| Q |
18 |
ttagtatagcaaaaattggttatgaatcacttagcaatatattttattataatgcaacccttcagtgtgtatgagaaaatatcttgttggttttggcttt |
117 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| || ||| ||||| |
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| T |
1154811 |
ttagcatagcaaaaattggttatgaatcacttagcaatatattttagcataatgcaacccttcagtgtgtatgagaaaatatcttattagttgtggct-- |
1154714 |
T |
|
| Q |
118 |
gagtcaaaacattgaagttttggatagcgtagcagtatagcctctcgatttctgcatctatgttgttgatgtttcatagtttgtttcccaatctattttg |
217 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||| || |||||||||||||||||||||||||||| |
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| T |
1154713 |
gagtcaaaacattgaagttttggatagcgtagcaatatagcctctcaatttctgcatctatgttgttcatagttcatagtttgtttcccaatctattttg |
1154614 |
T |
|
| Q |
218 |
gttgagttggattatgccattgattccttcggttccttttctgtgtatctgctgctctctcatattcttgctgccatttggtcttttgtcgggttaacca |
317 |
Q |
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|||| |||||||||||||||| ||||||||||||||||||||||||| || ||||||| |||||||||||||||| |||||||||||| | ||||||||| |
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| T |
1154613 |
gttgtgttggattatgccattaattccttcggttccttttctgtgtaactactgctctatcatattcttgctgccgtttggtcttttgccaggttaacca |
1154514 |
T |
|
| Q |
318 |
tcggagttttactttgca |
335 |
Q |
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|||||||||||||||||| |
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| T |
1154513 |
tcggagttttactttgca |
1154496 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 302 - 341
Target Start/End: Original strand, 1155121 - 1155160
Alignment:
| Q |
302 |
tttgtcgggttaaccatcggagttttactttgcagtttgc |
341 |
Q |
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|||| ||||||||| ||||||||||||||||||||||||| |
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| T |
1155121 |
tttgccgggttaactatcggagttttactttgcagtttgc |
1155160 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 437 - 497
Target Start/End: Original strand, 38041406 - 38041466
Alignment:
| Q |
437 |
aactctttgcatacccttatgttaattccataagtcgcagatacaactcttcatccctcat |
497 |
Q |
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|||||||||||||||| | ||||||||||| |||| || ||||||||||||| |||||||| |
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| T |
38041406 |
aactctttgcatacccctctgttaattccagaagttgcggatacaactcttcgtccctcat |
38041466 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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