View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1706_low_1 (Length: 829)

Name: NF1706_low_1
Description: NF1706
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1706_low_1
NF1706_low_1
[»] chr1 (2 HSPs)
chr1 (19-799)||(45596377-45597165)
chr1 (263-300)||(44529287-44529324)
[»] chr7 (1 HSPs)
chr7 (260-350)||(28198005-28198096)
[»] chr2 (1 HSPs)
chr2 (260-350)||(39575467-39575558)
[»] chr4 (1 HSPs)
chr4 (260-339)||(32931505-32931585)
[»] chr8 (1 HSPs)
chr8 (260-321)||(45185463-45185523)
[»] chr5 (1 HSPs)
chr5 (268-321)||(41247846-41247899)


Alignment Details
Target: chr1 (Bit Score: 507; Significance: 0; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 507; E-Value: 0
Query Start/End: Original strand, 19 - 799
Target Start/End: Complemental strand, 45597165 - 45596377
Alignment:
Q  19 tctttaacaactatgccctaagcttgataaacgataaacttgtaaaaattatagtactgttacagagttgtcaatttcagatgtatttccatagcttcaa 118  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||    
T  45597165 tctttaacaactatgccctaagcttaataaacgataaacttgtaaaaattatagtactgttatagagttgtcaatttcatatgtatttccatagcttcaa 45597066  T
Q  119 ggannnnnnnncttctgtctttggatctttcaagactttttgaatgaattcttttacaaaactaacataaacttcctattttacattaaagtgcccttgg 218  Q
    |||        |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45597065 ggattttttttcttcagtctttggatctttcaagactttttgaatgaattcttttacaaaactaacataaacttcctattttacattaaagtgcccttgg 45596966  T
Q  219 tgtatttgtttagaagtccaaaaaaaatcnnnnnnnnnnnnaaattgtgtattcaacgtattaaaactttaaaaagtaacttattttatataaattttat 318  Q
    ||||||||||||||| |||||||||||||            |||||||||||||||||||||||||        || |||||||||||||||||||||||    
T  45596965 tgtatttgtttagaaatccaaaaaaaatcttttttttttt-aaattgtgtattcaacgtattaaaa--------agaaacttattttatataaattttat 45596875  T
Q  319 aaaatctttctcttttgaatccttaataagtgtttttggaagaattgttaacgtaannnnnnnaaaa-gtttatagtaannnnnnncttctttatgtaaa 417  Q
    ||||||||||||||||||||||||||||||||||||| ||| ||||||||| ||||       |||| |||||||||||       ||| ||||||||||    
T  45596874 aaaatctttctcttttgaatccttaataagtgtttttagaacaattgttaaagtaattttttaaaaaagtttatagtaatttttttcttttttatgtaaa 45596775  T
Q  418 ctcaactcgatttgactagtgagcagttcagttggaccattaatccgataaaatagtactactagatatgaacttctatctacttactattggaagacag 517  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    ||||||||||||    
T  45596774 ctcaactcgatttgactagtgagcagttcagttggaccattaatccgataaaatagtactactagatatgaacttctatctact----attggaagacag 45596679  T
Q  518 catagaatggatgatcgaattgttttttatctttccatctacaggagagattaatgtcacaca--------ccctcctgtcaaaaaataaagagaaatta 609  Q
    |||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||        |||||||||||||||||||||||||||||    
T  45596678 catagaatggatgatcgaattgttttttatctttccatctacacaagagattaatgtcacacatttccccaccctcctgtcaaaaaataaagagaaatta 45596579  T
Q  610 tgaaaatgaattgtagaagcccacgttgagaaatattttgacacgttacacagttcgttcaagttcagctgataaatgaaactcgtcaacactatacacc 709  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45596578 tgaaaatgaattgtagaagcccacgttgagaaatattttgacacgttacacagttcgttcaagttcagctgataaatgaaactcgtcaacactatacacc 45596479  T
Q  710 ttaaccaataaacattcattgccgatagtattgacttgtcttt------------tctctccaatccaccgcttcaaaaagttttcccacaacttcgcct 797  Q
    ||||||||||||||||||||||||||||||||| |||||||||            ||||||||||| ||||||||||||||||||| ||||||||| |||    
T  45596478 ttaaccaataaacattcattgccgatagtattgtcttgtcttttctcatcacttctctctccaatctaccgcttcaaaaagttttcacacaacttcacct 45596379  T

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Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 263 - 300
Target Start/End: Original strand, 44529287 - 44529324
Alignment:
Q  263 ttgtgtattcaacgtattaaaactttaaaaagtaactt 300  Q
    ||||||||||||| ||||||||| ||||||||||||||    
T  44529287 ttgtgtattcaacatattaaaacattaaaaagtaactt 44529324  T

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Target: chr7 (Bit Score: 36; Significance: 0.00000000008; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 260 - 350
Target Start/End: Complemental strand, 28198096 - 28198005
Alignment:
Q  260 aaattgtgtattcaacgtattaaaactttaaaaagtaacttattttatataaattttataaaatcttt-ctcttttgaatccttaataagtg 350  Q
    |||||||||||||||   ||| |||||| |||||| ||||| || || |||||||||||||| | ||| ||||||||||||||||| |||||    
T  28198096 aaattgtgtattcaagacattgaaacttcaaaaagaaactttttctacataaattttataaattatttcctcttttgaatccttaacaagtg 28198005  T

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Target: chr2 (Bit Score: 36; Significance: 0.00000000008; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 260 - 350
Target Start/End: Complemental strand, 39575558 - 39575467
Alignment:
Q  260 aaattgtgtattcaacgtattaaaactttaaaaagtaacttattttatataaattttataaaatctttc-tcttttgaatccttaataagtg 350  Q
    |||||||||||| |||  ||| |||||| |||||| ||||| || || ||||| |||||||| | |||| ||||||||||||||||||||||    
T  39575558 aaattgtgtatttaacacattgaaacttcaaaaagaaactttttatacataaaatttataaattatttcctcttttgaatccttaataagtg 39575467  T

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Target: chr4 (Bit Score: 33; Significance: 0.000000005; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 260 - 339
Target Start/End: Complemental strand, 32931585 - 32931505
Alignment:
Q  260 aaattgtgtattcaacgtattaaaactttaaaaagtaacttattttatataaattttataaa-atctttctcttttgaatc 339  Q
    ||||||||||||||||  ||| ||  ||||||||| ||| | ||||||||||| |||||||| | ||||||||||||||||    
T  32931585 aaattgtgtattcaacccattgaagttttaaaaagaaacattttttatataaaatttataaataactttctcttttgaatc 32931505  T

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Target: chr8 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 260 - 321
Target Start/End: Original strand, 45185463 - 45185523
Alignment:
Q  260 aaattgtgtattcaacgtattaaaactttaaaaagtaacttattttatataaattttataaa 321  Q
    ||||||| |||||||| |||||||||||||||||| || ||| |||| ||||| ||||||||    
T  45185463 aaattgtatattcaacatattaaaactttaaaaagaaaatta-tttacataaaatttataaa 45185523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 268 - 321
Target Start/End: Original strand, 41247846 - 41247899
Alignment:
Q  268 tattcaacgtattaaaactttaaaaagtaacttattttatataaattttataaa 321  Q
    ||||||||| |||||||||||||||  ||| |  ||||||||||||||||||||    
T  41247846 tattcaacgcattaaaactttaaaatataattgtttttatataaattttataaa 41247899  T

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