View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1706_low_10 (Length: 491)
Name: NF1706_low_10
Description: NF1706
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1706_low_10 |
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| [»] scaffold0171 (3 HSPs) |
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| [»] scaffold0181 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 410; Significance: 0; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 410; E-Value: 0
Query Start/End: Original strand, 15 - 474
Target Start/End: Original strand, 24941038 - 24941494
Alignment:
| Q |
15 |
cagagaggtttatgagtgaagaagataataagtttgatgtgaggggacaaaatttccaacttatgccatttggaagtggtagaagggcttgccctggtgc |
114 |
Q |
| |
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||||||||||||||||||| |||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24941038 |
cagagaggtttatgagtgaggaagataataagttcgatgcgaggggacaaaatttccaacttatgccatttggaagtggtagaagggcttgccctggtgc |
24941137 |
T |
|
| Q |
115 |
cactttagcacttcaagttgttcccacaaatcttgctgcaatgattcagtgttttgaatggaatgttgatggtaatgggaaagttaacatggaagagaaa |
214 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24941138 |
cactttagcacttcaagttgttcccacaaatcttgctgcaatgattcagtgttttgaatggaatgttgatggtaatgggaaagttaacatggaagagaaa |
24941237 |
T |
|
| Q |
215 |
ccggcggtgacccttccaagggctcatcctttgatctgtgttcctgtgccccgttttaataccattccttcttgtgaatgaacatataggtgattgagca |
314 |
Q |
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| || || |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24941238 |
tccgctgtaacccttccaagggctcatcctttgatttgtgttcctgtgccccgttttaataccattccttcttgtgaatgaacatataggtgattgagca |
24941337 |
T |
|
| Q |
315 |
cacaggagaatcctcagttgcatgagttccccatcacgatcattatattatctctatcaactttcactctgaaattattacatgtcatgtattggtgtat |
414 |
Q |
| |
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|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
24941338 |
cacaggagaatcctcagttgcatgtgttccccatcacgatcattatattatctctatcaactttcactctgaa---attacatgtcatgtattggtgtat |
24941434 |
T |
|
| Q |
415 |
ttgtgtttatattcttaatcttaatactttgagaattaagataggattgacggcgtaact |
474 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
24941435 |
ttgtgtttatattcttaatcttaatactttgagaattaagataggattgacggcgtaact |
24941494 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 15 - 296
Target Start/End: Original strand, 25169474 - 25169755
Alignment:
| Q |
15 |
cagagaggtttatgagtgaagaagataataagtttgatgtgaggggacaaaatttccaacttatgccatttggaagtggtagaagggcttgccctggtgc |
114 |
Q |
| |
|
|||||||||||||| |||||||| |||| ||||| ||| ||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
25169474 |
cagagaggtttatgtgtgaagaaaataacaagttcgatatgagggggcaaaatttccaacttatgccatttggaactggtagaagggcttgccctggtta |
25169573 |
T |
|
| Q |
115 |
cactttagcacttcaagttgttcccacaaatcttgctgcaatgattcagtgttttgaatggaatgttgatggtaatgggaaagttaacatggaagagaaa |
214 |
Q |
| |
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| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
25169574 |
cttattagcacttcaagttgttcccacaaatcttgctgcaatgattcagtgttttgaatggaatgttgatggtaatgggaaagttgacatggaagagaaa |
25169673 |
T |
|
| Q |
215 |
ccggcggtgacccttccaagggctcatcctttgatctgtgttcctgtgccccgttttaataccattccttcttgtgaatgaa |
296 |
Q |
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||||| ||||||||||||||||||||||||||||| |||||||||||||| |||||||||| ||||||||| |||||||||| |
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| T |
25169674 |
ccggccgtgacccttccaagggctcatcctttgatttgtgttcctgtgccgcgttttaatagcattccttcgtgtgaatgaa |
25169755 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 41 - 138
Target Start/End: Complemental strand, 38807707 - 38807610
Alignment:
| Q |
41 |
aataagtttgatgtgaggggacaaaatttccaacttatgccatttggaagtggtagaagggcttgccctggtgccactttagcacttcaagttgttcc |
138 |
Q |
| |
|
|||||||| |||||||||||||||||||||||| |||| |||||||||| ||| ||||| ||||||||||||| | | |||||||||||||||||||| |
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| T |
38807707 |
aataagttagatgtgaggggacaaaatttccaatttataccatttggaactggaagaagagcttgccctggtgtctcattagcacttcaagttgttcc |
38807610 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0171 (Bit Score: 135; Significance: 4e-70; HSPs: 3)
Name: scaffold0171
Description:
Target: scaffold0171; HSP #1
Raw Score: 135; E-Value: 4e-70
Query Start/End: Original strand, 15 - 255
Target Start/End: Original strand, 19824 - 20061
Alignment:
| Q |
15 |
cagagaggtttatgagtgaagaagataataagtttgatgtgaggggacaaaatttccaacttatgccatttggaagtggtagaagggcttgccctggtgc |
114 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||| ||| || ||| ||||||||||||| |
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|
| T |
19824 |
cagagaggtttatgagtgaagag---aataagtttgatgtgaggggacaaaatttccaatttatgccatttggaactggaaggaggtcttgccctggtgc |
19920 |
T |
|
| Q |
115 |
cactttagcacttcaagttgttcccacaaatcttgctgcaatgattcagtgttttgaatggaatgttgatggtaatgggaaagttaacatggaagagaaa |
214 |
Q |
| |
|
| ||||||||||| | |||||| ||||||||||| |||||||||||||||||||||||||| |||| ||||||||| |||||||||||||| |||||| |
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| T |
19921 |
ttcattagcacttcaggctgttccgacaaatcttgccgcaatgattcagtgttttgaatggaaggttggtggtaatggaaaagttaacatggatgagaaa |
20020 |
T |
|
| Q |
215 |
ccggcggtgacccttccaagggctcatcctttgatctgtgt |
255 |
Q |
| |
|
|||| || |||||||||||||||||||||||| ||||| |
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| T |
20021 |
gcggccacgagccttccaagggctcatcctttgatttgtgt |
20061 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0171; HSP #2
Raw Score: 134; E-Value: 1e-69
Query Start/End: Original strand, 17 - 284
Target Start/End: Original strand, 12040 - 12304
Alignment:
| Q |
17 |
gagaggtttatgagtgaagaagataataagtttgatgtgaggggacaaaatttccaacttatgccatttggaagtggtagaagggcttgccctggtgcca |
116 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||| ||| ||| ||| |||||| |||||| |
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| T |
12040 |
gagaggtttatgagtgaagag---aataagtttgatgtgaggggacaaaatttccaacttatgccattcggaactggaagacggggttgccccggtgcct |
12136 |
T |
|
| Q |
117 |
ctttagcacttcaagttgttcccacaaatcttgctgcaatgattcagtgttttgaatggaatgttgatggtaatgggaaagttaacatggaagagaaacc |
216 |
Q |
| |
|
| ||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||| |||| |||| |||| | ||||||||||||||||||||| |
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|
| T |
12137 |
cattagcacttcaagctgttccaacaaatcttgctgcaatgattcagtgttttgaatggaaagttggtggtgatggaacagttaacatggaagagaaacc |
12236 |
T |
|
| Q |
217 |
ggcggtgacccttccaagggctcatcctttgatctgtgttcctgtgccccgttttaataccattcctt |
284 |
Q |
| |
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| |||||||||||||||||||||||||| ||||| ||| | || |||||| ||| | |||||| |
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|
| T |
12237 |
ttcaaccacccttccaagggctcatcctttgatatgtgtccctattcctcgttttcatagctttcctt |
12304 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0171; HSP #3
Raw Score: 103; E-Value: 5e-51
Query Start/End: Original strand, 15 - 255
Target Start/End: Original strand, 25673 - 25910
Alignment:
| Q |
15 |
cagagaggtttatgagtgaagaagataataagtttgatgtgaggggacaaaatttccaacttatgccatttggaagtggtagaagggcttgccctggtgc |
114 |
Q |
| |
|
||||||||||||||||||||| |||||||||||| | |||||||||||||||||| |||| ||||||||| ||| ||||| ||||| |||||| | |
|
|
| T |
25673 |
cagagaggtttatgagtgaaggg---aataagtttgatctaaggggacaaaatttccaatttataccatttggatttggaagaagagcttgtcctggtac |
25769 |
T |
|
| Q |
115 |
cactttagcacttcaagttgttcccacaaatcttgctgcaatgattcagtgttttgaatggaatgttgatggtaatgggaaagttaacatggaagagaaa |
214 |
Q |
| |
|
| | || || |||||||||||||| |||||||||||||| || |||||||||||||||| ||| |||| ||||||||| | ||||| ||||||||||||| |
|
|
| T |
25770 |
ctcattcgcgcttcaagttgttccaacaaatcttgctgctattattcagtgttttgaattgaaggttggtggtaatggaacagttagcatggaagagaaa |
25869 |
T |
|
| Q |
215 |
ccggcggtgacccttccaagggctcatcctttgatctgtgt |
255 |
Q |
| |
|
| || ||||||||||||||||||||||||||| ||||| |
|
|
| T |
25870 |
gcttcgacgacccttccaagggctcatcctttgatgtgtgt |
25910 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0181 (Bit Score: 112; Significance: 2e-56; HSPs: 1)
Name: scaffold0181
Description:
Target: scaffold0181; HSP #1
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 17 - 286
Target Start/End: Complemental strand, 9807 - 9541
Alignment:
| Q |
17 |
gagaggtttatgagtgaagaagataataagtttgatgtgaggggacaaaatttccaacttatgccatttggaagtggtagaagggcttgccctggtgcca |
116 |
Q |
| |
|
||||||||||||||||||| |||||||||||| | | |||||| ||||| ||| |||||||||||||| ||| |||||||||||||||||||| |
|
|
| T |
9807 |
gagaggtttatgagtgaaggg---aataagtttgattttaagggacagaatttgcaatatatgccatttggaactggaagaagggcttgccctggtgctt |
9711 |
T |
|
| Q |
117 |
ctttagcacttcaagttgttcccacaaatcttgctgcaatgattcagtgttttgaatggaatgttgatggtaatgggaaagttaacatggaagagaaacc |
216 |
Q |
| |
|
| ||||||||||||| |||||| ||||||||||||||||||||||| |||||| | ||||| ||| |||| |||| | ||||||||||||||||||||| |
|
|
| T |
9710 |
cattagcacttcaagctgttccaacaaatcttgctgcaatgattcaatgtttttattggaaggttagtggtgatggaacagttaacatggaagagaaacc |
9611 |
T |
|
| Q |
217 |
ggcggtgacccttccaagggctcatcctttgatctgtgttcctgtgccccgttttaataccattccttct |
286 |
Q |
| |
|
|| |||||||||| ||||||||||||||||| ||||| ||| | || |||||||| | |||||||||| |
|
|
| T |
9610 |
agctttgacccttcctagggctcatcctttgatgtgtgtccctattcctcgttttaaaagcattccttct |
9541 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 58; Significance: 3e-24; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 140 - 264
Target Start/End: Original strand, 36735471 - 36735598
Alignment:
| Q |
140 |
acaaatcttgctgcaatgattcagtgttttgaatggaatgttga---tggtaatgggaaagttaacatggaagagaaaccggcggtgacccttccaaggg |
236 |
Q |
| |
|
|||||||||||||| |||||||| |||||||||||||| ||| | ||||||||||| ||||| |||||||||||||| | | |||||||| |||||| |
|
|
| T |
36735471 |
acaaatcttgctgctatgattcaatgttttgaatggaaggttaaaggtggtaatgggattgttaatatggaagagaaacctgggttgaccctttcaaggg |
36735570 |
T |
|
| Q |
237 |
ctcatcctttgatctgtgttcctgtgcc |
264 |
Q |
| |
|
|||||||||| || ||||| |||||||| |
|
|
| T |
36735571 |
ctcatcctttaatttgtgtccctgtgcc |
36735598 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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