View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1706_low_12 (Length: 486)
Name: NF1706_low_12
Description: NF1706
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1706_low_12 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 407; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 407; E-Value: 0
Query Start/End: Original strand, 19 - 478
Target Start/End: Original strand, 30841958 - 30842417
Alignment:
| Q |
19 |
tctctccagaaaacaaactcgagaaagcaaaattgaaatccacttccaattctaaactaaactctgcataatcataatcatctttcaaaatccaaattct |
118 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
30841958 |
tctctccagaaaacaaactagagaaagcaaaattgaaatccacttccaattctaaactaaactctgcataatcaaaatcatctttcaaaatccaaattct |
30842057 |
T |
|
| Q |
119 |
aacaacnnnnnnntggatttatcatcaccgtcgtcgccatcattatcacgatcaacggaagatgcagtagaagaaataatgaaaactcacagatcattac |
218 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30842058 |
aacaacaaaaaaatggatttatcatcaccgtcgtcgccatcattatcacgatcaacagaagatgcagtagaagaaataatgaaaactcacagatcattac |
30842157 |
T |
|
| Q |
219 |
cggcaaggccaagaacagaagaagttgaagcagccctaacggtggttgaaaacgcagacaaagaagaattgtcgagactagaagtattttcttcatcatc |
318 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||| |
|
|
| T |
30842158 |
cggcaaggccaagaacagaagaagttgaagcagccctaacggtggttgaaaacgcagacaaagaagaatcgtcgggactagaagtattttcttcatcatc |
30842257 |
T |
|
| Q |
319 |
atcgtctagaaaatccaaaggttcttcttccatgtcggaagagcttttaacaattttacaagagatacggaaaagtattgtgtctttcgaatgcaaagag |
418 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
30842258 |
atcgtctagaaaatccaaaggttcttcttccatgtcggaagagcttttaacaattttacaagagatgcggaaaagtattgtgtctttcgaatgcaaagag |
30842357 |
T |
|
| Q |
419 |
aaaaagagagatgctcttaaactcttagaacacgaaaaagttcatgttctatttgatgat |
478 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||| |
|
|
| T |
30842358 |
aaaaagagagatgctcttaaactcttagaactcgaaaaagttcatgttctgtttgatgat |
30842417 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University