View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1706_low_13 (Length: 482)
Name: NF1706_low_13
Description: NF1706
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1706_low_13 |
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Alignment Details
Target: chr2 (Bit Score: 405; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 405; E-Value: 0
Query Start/End: Original strand, 43 - 471
Target Start/End: Complemental strand, 33655039 - 33654611
Alignment:
| Q |
43 |
tctcaggtattggatcactctgaagaagacgagtcaactgcatcctctgagtctacttatgagagtgattcagatgacaattcaaagcgaagcaacaaga |
142 |
Q |
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| T |
33655039 |
tctcaggtattggatcactctgaagaagacgagtcaactgcatcctctgagtctacttatgagagtgattcagatgacaattcaaagcgaagcaacaaga |
33654940 |
T |
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| Q |
143 |
aacatggaaagaaatcgtcaaggaaggtagttatccgtaacataaactatataacttccaatggagacggagaaaaaggtagtatcactgaagggagttt |
242 |
Q |
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| T |
33654939 |
aacatggaaagaagtcgtcaaggaaagtagttatccgtaacataaactatataacttccaagggagacggagaaaaaggtagtatcactgaagggagttt |
33654840 |
T |
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| Q |
243 |
gtcgaatgaggaagaatttatcaatggaaattccttgaaacacaaggtagaggaagctgttgcgtcactggataaaagaaacaggtcaacctctcgtcag |
342 |
Q |
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| T |
33654839 |
gtcgaatgaggaagaatttatcaatggaaattccttgaaacacaaggtagaggaagctgttgcgtcactggagaaaagaaacaggccaacctctcgtcag |
33654740 |
T |
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| Q |
343 |
cataagaaacaacatagcgcaaagccccatgacatgctaaatggttcaaggaatgctgattccaacggcataaaaggtgataacaactgggatgctttcc |
442 |
Q |
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| T |
33654739 |
cataagaaacaacatagcgcaaagccccatgacatgctaaatggttcaaggaatgctgattccatcggcataaaaggtgataacaactgggatgctttcc |
33654640 |
T |
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| Q |
443 |
agaatcttcttttgatagacgatgatgat |
471 |
Q |
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| T |
33654639 |
agaatcttcttttgatagacgatgatgat |
33654611 |
T |
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