View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1706_low_15 (Length: 474)
Name: NF1706_low_15
Description: NF1706
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1706_low_15 |
 | |
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| [»] scaffold0341 (2 HSPs) |
| | |
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Alignment Details
Target: scaffold0341 (Bit Score: 428; Significance: 0; HSPs: 2)
Name: scaffold0341
Description:
Target: scaffold0341; HSP #1
Raw Score: 428; E-Value: 0
Query Start/End: Original strand, 1 - 452
Target Start/End: Complemental strand, 1003 - 552
Alignment:
| Q |
1 |
gatggtacgacgatgaaaaatgcatgttgcgttcctcacaccgttcaatatttggtatcaatgaaatgggacctgccatgattgcatggaatttgcagaa |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
1003 |
gatggtacgacgatgaaaaatgcatgttgcgttcctcacaccgtttaatatttggtatcaatgaaatgggacctgccatgattgcatggaatttgcagaa |
904 |
T |
|
| Q |
101 |
cgcaacaaaggaagtcgaagatgaatttgataaagggctgaaaaatttgttgtataatttaaaaaatatagctgcatcgggggaaagtgaccttaaatat |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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|
| T |
903 |
cgcaacaaaggaagtcgaagatgaatttgataaagggctgaaaaatttgttgtataatttaaaaaatttagctgcatcgggggaaagtgaccttaaatat |
804 |
T |
|
| Q |
201 |
gctgtaggaaatgatgtgattggtccaaataataatcaaaccatatttgctcttgttcaatgcacacctgatttgtctgaaacattgtgtgatgaatgtt |
300 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
803 |
gctgtaggaagtgatgtgattggtccaaataataatcaaaccatatttgctcttgttcaatgcacacctgatttgtctgaaacattgtgtgatgaatgtt |
704 |
T |
|
| Q |
301 |
tggataaatctatcaaagaaatcccaaattgttgtgacaatagaatgggtataggtggtagatttcttagacccagttgttatttgagatatgaaaccaa |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
703 |
tggataaatctatcaaagaaatcccaaattgttgtgacaatagaataggtataggtggtagatttcttagacccagttgttatttgagatatgaaaccaa |
604 |
T |
|
| Q |
401 |
ttcacttttctatcaacaaacacaagattcaccttcatcatcgtcgtcatca |
452 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||||||||| |||||| |
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|
| T |
603 |
ttcacttttctatcaacaaactcaagattcaccttcatcatcgtcatcatca |
552 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0341; HSP #2
Raw Score: 428; E-Value: 0
Query Start/End: Original strand, 1 - 452
Target Start/End: Complemental strand, 8656 - 8205
Alignment:
| Q |
1 |
gatggtacgacgatgaaaaatgcatgttgcgttcctcacaccgttcaatatttggtatcaatgaaatgggacctgccatgattgcatggaatttgcagaa |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
8656 |
gatggtacgacgatgaaaaatgcatgttgcgttcctcacaccgtttaatatttggtatcaatgaaatgggacctgccatgattgcatggaatttgcagaa |
8557 |
T |
|
| Q |
101 |
cgcaacaaaggaagtcgaagatgaatttgataaagggctgaaaaatttgttgtataatttaaaaaatatagctgcatcgggggaaagtgaccttaaatat |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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|
| T |
8556 |
cgcaacaaaggaagtcgaagatgaatttgataaagggctgaaaaatttgttgtataatttaaaaaatttagctgcatcgggggaaagtgaccttaaatat |
8457 |
T |
|
| Q |
201 |
gctgtaggaaatgatgtgattggtccaaataataatcaaaccatatttgctcttgttcaatgcacacctgatttgtctgaaacattgtgtgatgaatgtt |
300 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
8456 |
gctgtaggaagtgatgtgattggtccaaataataatcaaaccatatttgctcttgttcaatgcacacctgatttgtctgaaacattgtgtgatgaatgtt |
8357 |
T |
|
| Q |
301 |
tggataaatctatcaaagaaatcccaaattgttgtgacaatagaatgggtataggtggtagatttcttagacccagttgttatttgagatatgaaaccaa |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
8356 |
tggataaatctatcaaagaaatcccaaattgttgtgacaatagaataggtataggtggtagatttcttagacccagttgttatttgagatatgaaaccaa |
8257 |
T |
|
| Q |
401 |
ttcacttttctatcaacaaacacaagattcaccttcatcatcgtcgtcatca |
452 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||||||||| |||||| |
|
|
| T |
8256 |
ttcacttttctatcaacaaactcaagattcaccttcatcatcgtcatcatca |
8205 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 428; Significance: 0; HSPs: 7)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 428; E-Value: 0
Query Start/End: Original strand, 1 - 452
Target Start/End: Complemental strand, 6506978 - 6506527
Alignment:
| Q |
1 |
gatggtacgacgatgaaaaatgcatgttgcgttcctcacaccgttcaatatttggtatcaatgaaatgggacctgccatgattgcatggaatttgcagaa |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6506978 |
gatggtacgacgatgaaaaatgcatgttgcgttcctcacaccgtttaatatttggtatcaatgaaatgggacctgccatgattgcatggaatttgcagaa |
6506879 |
T |
|
| Q |
101 |
cgcaacaaaggaagtcgaagatgaatttgataaagggctgaaaaatttgttgtataatttaaaaaatatagctgcatcgggggaaagtgaccttaaatat |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
6506878 |
cgcaacaaaggaagtcgaagatgaatttgataaagggctgaaaaatttgttgtataatttaaaaaatttagctgcatcgggggaaagtgaccttaaatat |
6506779 |
T |
|
| Q |
201 |
gctgtaggaaatgatgtgattggtccaaataataatcaaaccatatttgctcttgttcaatgcacacctgatttgtctgaaacattgtgtgatgaatgtt |
300 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6506778 |
gctgtaggaagtgatgtgattggtccaaataataatcaaaccatatttgctcttgttcaatgcacacctgatttgtctgaaacattgtgtgatgaatgtt |
6506679 |
T |
|
| Q |
301 |
tggataaatctatcaaagaaatcccaaattgttgtgacaatagaatgggtataggtggtagatttcttagacccagttgttatttgagatatgaaaccaa |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6506678 |
tggataaatctatcaaagaaatcccaaattgttgtgacaatagaataggtataggtggtagatttcttagacccagttgttatttgagatatgaaaccaa |
6506579 |
T |
|
| Q |
401 |
ttcacttttctatcaacaaacacaagattcaccttcatcatcgtcgtcatca |
452 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||||||||| |||||| |
|
|
| T |
6506578 |
ttcacttttctatcaacaaactcaagattcaccttcatcatcgtcatcatca |
6506527 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 157; E-Value: 3e-83
Query Start/End: Original strand, 117 - 436
Target Start/End: Complemental strand, 6517168 - 6516855
Alignment:
| Q |
117 |
gaagatgaatttgataaagggctgaaaaatttgttgtataatttaaaaaatatagctgcatcgggggaaagtgaccttaaatatgctgtaggaaatgatg |
216 |
Q |
| |
|
||||||||||||||||||| || ||||||||||||| ||||||||| ||||| ||||||||| ||||| ||||||||||||||||||||||||| ||||| |
|
|
| T |
6517168 |
gaagatgaatttgataaagtgcggaaaaatttgttggataatttaagaaatagagctgcatcaggggacagtgaccttaaatatgctgtaggaagtgatg |
6517069 |
T |
|
| Q |
217 |
tgattggtccaaataataatcaaaccatatttgctcttgttcaatgcacacctgatttgtctgaaacattgtgtgatgaatgtttggataaatctatcaa |
316 |
Q |
| |
|
| ||||||||||||||||||||||||||| || ||| | |||||||||||||||||||| | ||||||| |||||||| ||||||| | |||||||||| |
|
|
| T |
6517068 |
aggttggtccaaataataatcaaaccatatatggtctagctcaatgcacacctgatttgtttaaaacattttgtgatgattgtttggttcaatctatcaa |
6516969 |
T |
|
| Q |
317 |
agaaatcccaaattgttgtgacaatagaatgggtataggtggtagatttcttagacccagttgttatttgagatatgaaaccaattcacttttctatcaa |
416 |
Q |
| |
|
|||||| ||| |||||| |||| || ||| ||| |||| || |||||||||||||||||||||||||||||||| ||||||| || |||||| |
|
|
| T |
6516968 |
tgaaatcgcaatatgttgtaacaacaggatg------agtgctagagttgttagacccagttgttatttgagatatgaaaccgattcactcttttatcaa |
6516875 |
T |
|
| Q |
417 |
caaacacaagattcaccttc |
436 |
Q |
| |
|
| |||||||||||||||||| |
|
|
| T |
6516874 |
ccaacacaagattcaccttc |
6516855 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 146; E-Value: 1e-76
Query Start/End: Original strand, 117 - 441
Target Start/End: Complemental strand, 6512769 - 6512451
Alignment:
| Q |
117 |
gaagatgaatttgataaagggctgaaaaatttgttgtataatttaaaaaatatagctgcatcgggggaaagtgaccttaaatatgctgtaggaaatgatg |
216 |
Q |
| |
|
||||||||||||||||||| ||||||||||| ||| ||||||||| ||||| |||| |||| || || |||||||||||||||||||| |||| ||||| |
|
|
| T |
6512769 |
gaagatgaatttgataaagtactgaaaaatttattggataatttaagaaatagagcttcatcaggtgatagtgaccttaaatatgctgttggaagtgatg |
6512670 |
T |
|
| Q |
217 |
tgattggtccaaataataatcaaaccatatttgctcttgttcaatgcacacctgatttgtctgaaacattgtgtgatgaatgtttggataaatctatcaa |
316 |
Q |
| |
|
| |||||| ||||||||||||||| |||| ||||||||||||||||||||||||||||||| || ||||||| ||||| ||||||| ||||||||||| |
|
|
| T |
6512669 |
aggttggtcaaaataataatcaaactatatatgctcttgttcaatgcacacctgatttgtctaaatcattgtgcgatgattgtttggtaaaatctatcaa |
6512570 |
T |
|
| Q |
317 |
agaaatcccaaattgttgtgacaatagaatgggtataggtggtagatttcttagacccagttgttatttgagatatgaaaccaattcacttttctatcaa |
416 |
Q |
| |
|
|| |||||||| |||||| |||| || || |||| |||| || ||||||| |||||||||||||||||||||||| ||||||| ||||||||| |
|
|
| T |
6512569 |
agcaatcccaagatgttgtaacaacaggttg------ggtgctagaattgttagaccaagttgttatttgagatatgaaaccgattcactcttctatcaa |
6512476 |
T |
|
| Q |
417 |
caaacacaagattcaccttcatcat |
441 |
Q |
| |
|
||||||| |||| |||| ||||||| |
|
|
| T |
6512475 |
caaacaccagatccaccctcatcat |
6512451 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 138; E-Value: 6e-72
Query Start/End: Original strand, 1 - 417
Target Start/End: Original strand, 6521757 - 6522161
Alignment:
| Q |
1 |
gatggtacgacgatgaaaaatgcatgttgcgttcctcacaccgttcaatatttggtatcaatgaaatgggacctgccatgattgcatggaatttgcagaa |
100 |
Q |
| |
|
|||||||| |||||||| ||||||||||||||| |||| ||||||||||||||||| |||| ||||| |||||||| ||| |||||| | || |
|
|
| T |
6521757 |
gatggtacaacgatgaagaatgcatgttgcgttactcaaaccgttcaatatttggtctcaacgaaattggacctgcttattttgtttggaatacaaacaa |
6521856 |
T |
|
| Q |
101 |
cgcaacaaaggaagtcgaagatgaatttgataaagggctgaaaaatttgttgtataatttaaaaaatatagctgcatcgggggaaagtgaccttaaatat |
200 |
Q |
| |
|
||||||||| || || ||| ||| | |||| | |||| ||| ||| ||| ||||| ||||| ||||||||| ||||| ||||||||||||||| |
|
|
| T |
6521857 |
cgcaacaaatgaggt------tgagtttaacaaagtggtgaatttttttttggatagtttaagaaatagagctgcatcaggggacagtgaccttaaatat |
6521950 |
T |
|
| Q |
201 |
gctgtaggaaatgatgtgattggtccaaataataatcaaaccatatttgctcttgttcaatgcacacctgatttgtctgaaacattgtgtgatgaatgtt |
300 |
Q |
| |
|
|||||||||| ||||| | ||||||||| |||||| |||||||||| || |||||||||||||||||||||||||||| ||||||| |||||||| |||| |
|
|
| T |
6521951 |
gctgtaggaagtgatgaggttggtccaagtaataaccaaaccatatatggtcttgttcaatgcacacctgatttgtctaaaacattatgtgatgattgtt |
6522050 |
T |
|
| Q |
301 |
tggataaatctatcaaagaaatcccaaattgttgtgacaatagaatgggtataggtggtagatttcttagacccagttgttatttgagatatgaaaccaa |
400 |
Q |
| |
|
||| | |||||||||||||||| ||||||||||| |||||| ||| |||||| |||| || |||||||||||||| ||||||||||||||||||| |
|
|
| T |
6522051 |
tggttcaatctatcaaagaaatttcaaattgttgtaacaata-----ggt-taggtgctagaattgttagacccagttgtaatttgagatatgaaaccaa |
6522144 |
T |
|
| Q |
401 |
ttcacttttctatcaac |
417 |
Q |
| |
|
|||| | |||||||||| |
|
|
| T |
6522145 |
ttcattcttctatcaac |
6522161 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 3 - 76
Target Start/End: Original strand, 47778077 - 47778150
Alignment:
| Q |
3 |
tggtacgacgatgaaaaatgcatgttgcgttcctcacaccgttcaatatttggtatcaatgaaatgggacctgc |
76 |
Q |
| |
|
|||||||| |||||||||||||||||||||| |||| |||||||||||||| | |||||||||| |||||||| |
|
|
| T |
47778077 |
tggtacgaggatgaaaaatgcatgttgcgttactcagaccgttcaatatttagcctcaatgaaattggacctgc |
47778150 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 3 - 64
Target Start/End: Complemental strand, 6517276 - 6517215
Alignment:
| Q |
3 |
tggtacgacgatgaaaaatgcatgttgcgttcctcacaccgttcaatatttggtatcaatga |
64 |
Q |
| |
|
|||||||| ||||| | |||||||||||||| |||| |||||||||||||||| || |||| |
|
|
| T |
6517276 |
tggtacgatgatgatagatgcatgttgcgttactcaagccgttcaatatttggtctctatga |
6517215 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 236 - 277
Target Start/End: Complemental strand, 47759955 - 47759914
Alignment:
| Q |
236 |
tcaaaccatatttgctcttgttcaatgcacacctgatttgtc |
277 |
Q |
| |
|
||||||||||| || ||||||||| ||||||||||||||||| |
|
|
| T |
47759955 |
tcaaaccatatatggtcttgttcagtgcacacctgatttgtc |
47759914 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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