View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1706_low_16 (Length: 460)

Name: NF1706_low_16
Description: NF1706
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1706_low_16
NF1706_low_16
[»] chr2 (36 HSPs)
chr2 (101-235)||(31931108-31931242)
chr2 (1-73)||(7465764-7465836)
chr2 (1-76)||(9058476-9058551)
chr2 (1-72)||(17473020-17473091)
chr2 (1-67)||(19930849-19930915)
chr2 (1-67)||(28863460-28863526)
chr2 (351-444)||(31934202-31934300)
chr2 (3-72)||(27864704-27864773)
chr2 (1-74)||(33436129-33436202)
chr2 (1-74)||(38882843-38882915)
chr2 (2-74)||(38273172-38273244)
chr2 (4-72)||(40613934-40614002)
chr2 (1-72)||(4060685-4060756)
chr2 (1-76)||(10249411-10249486)
chr2 (1-72)||(40701478-40701549)
chr2 (1-74)||(30915461-30915534)
chr2 (1-73)||(5574517-5574589)
chr2 (1-73)||(32505677-32505749)
chr2 (1-72)||(13438343-13438414)
chr2 (1-72)||(28381684-28381755)
chr2 (4-73)||(33436210-33436279)
chr2 (2-73)||(2533123-2533193)
chr2 (7-74)||(26891539-26891606)
chr2 (1-74)||(20700813-20700886)
chr2 (7-72)||(43490121-43490186)
chr2 (7-67)||(41575142-41575202)
chr2 (7-74)||(13365349-13365418)
chr2 (4-74)||(42257191-42257261)
chr2 (7-72)||(17820039-17820104)
chr2 (4-73)||(36168835-36168904)
chr2 (7-74)||(45097770-45097837)
chr2 (7-72)||(38732354-38732419)
chr2 (7-54)||(2997522-2997569)
chr2 (3-75)||(17823781-17823853)
chr2 (11-66)||(3439985-3440040)
chr2 (7-74)||(15428775-15428842)
[»] chr3 (37 HSPs)
chr3 (1-80)||(49607406-49607485)
chr3 (1-75)||(11095382-11095456)
chr3 (1-68)||(52629304-52629371)
chr3 (1-72)||(53982011-53982082)
chr3 (1-75)||(33118880-33118954)
chr3 (1-75)||(54868924-54868998)
chr3 (1-74)||(36707453-36707526)
chr3 (1-72)||(33644200-33644271)
chr3 (4-74)||(11347954-11348024)
chr3 (1-74)||(27714920-27714993)
chr3 (4-72)||(26141564-26141632)
chr3 (4-72)||(47531865-47531933)
chr3 (10-73)||(36331416-36331479)
chr3 (7-69)||(26754698-26754760)
chr3 (1-67)||(31456694-31456760)
chr3 (1-73)||(17470404-17470476)
chr3 (4-72)||(51419392-51419460)
chr3 (1-72)||(8076393-8076464)
chr3 (1-67)||(48587120-48587186)
chr3 (1-73)||(9562998-9563070)
chr3 (7-72)||(14623874-14623939)
chr3 (4-73)||(24699986-24700055)
chr3 (7-72)||(45058588-45058652)
chr3 (4-72)||(20764947-20765015)
chr3 (4-75)||(41189796-41189867)
chr3 (1-67)||(30801762-30801828)
chr3 (4-73)||(8956761-8956830)
chr3 (4-73)||(35536625-35536694)
chr3 (7-75)||(11907368-11907436)
chr3 (4-67)||(13898087-13898150)
chr3 (7-74)||(35093583-35093650)
chr3 (8-73)||(48375742-48375807)
chr3 (4-76)||(35965806-35965878)
chr3 (7-75)||(1758491-1758561)
chr3 (9-72)||(41080709-41080771)
chr3 (4-45)||(1078343-1078383)
chr3 (4-45)||(36150255-36150295)
[»] chr4 (34 HSPs)
chr4 (1-82)||(48183078-48183159)
chr4 (1-72)||(41236347-41236418)
chr4 (7-81)||(55475182-55475256)
chr4 (1-74)||(480476-480549)
chr4 (1-74)||(29239884-29239957)
chr4 (1-74)||(50052457-50052530)
chr4 (1-72)||(6034044-6034115)
chr4 (1-72)||(11511491-11511562)
chr4 (1-75)||(23608232-23608306)
chr4 (1-73)||(29234274-29234346)
chr4 (5-72)||(40574779-40574846)
chr4 (7-73)||(47986207-47986273)
chr4 (1-74)||(24995136-24995209)
chr4 (1-74)||(42044396-42044469)
chr4 (4-72)||(50526203-50526271)
chr4 (1-72)||(3481654-3481725)
chr4 (7-74)||(19670751-19670818)
chr4 (1-72)||(54473562-54473633)
chr4 (6-72)||(31910192-31910258)
chr4 (7-75)||(29547994-29548062)
chr4 (7-74)||(32766956-32767023)
chr4 (7-73)||(44536781-44536846)
chr4 (7-73)||(50813927-50813993)
chr4 (7-72)||(18924530-18924595)
chr4 (7-72)||(55079749-55079814)
chr4 (1-81)||(29977876-29977956)
chr4 (7-72)||(8343198-8343263)
chr4 (4-76)||(47104540-47104612)
chr4 (7-54)||(17983778-17983825)
chr4 (1-68)||(53352595-53352661)
chr4 (9-64)||(29589777-29589831)
chr4 (1-73)||(28480297-28480369)
chr4 (1-73)||(28481172-28481244)
chr4 (1-73)||(28482047-28482119)
[»] chr1 (31 HSPs)
chr1 (1-74)||(2581913-2581986)
chr1 (1-72)||(9474905-9474976)
chr1 (1-72)||(48716311-48716382)
chr1 (1-74)||(38632350-38632423)
chr1 (1-73)||(41758804-41758876)
chr1 (1-72)||(3000319-3000390)
chr1 (4-74)||(32813245-32813315)
chr1 (2-76)||(49811557-49811631)
chr1 (1-74)||(38595152-38595225)
chr1 (1-73)||(51898712-51898784)
chr1 (1-72)||(47452349-47452420)
chr1 (1-74)||(8346417-8346490)
chr1 (3-72)||(27564766-27564835)
chr1 (7-72)||(50591035-50591100)
chr1 (1-67)||(11152407-11152472)
chr1 (4-72)||(26440734-26440802)
chr1 (4-72)||(37649198-37649266)
chr1 (1-73)||(50630457-50630529)
chr1 (7-74)||(5959035-5959102)
chr1 (1-76)||(26274428-26274503)
chr1 (1-67)||(44548405-44548471)
chr1 (7-72)||(41608528-41608593)
chr1 (1-72)||(43132-43203)
chr1 (4-74)||(23597123-23597193)
chr1 (2-75)||(45044590-45044663)
chr1 (1-42)||(13414791-13414832)
chr1 (4-73)||(37926470-37926539)
chr1 (7-72)||(47748443-47748507)
chr1 (7-71)||(44453980-44454044)
chr1 (4-68)||(34340071-34340134)
chr1 (1-41)||(44334199-44334239)
[»] chr8 (31 HSPs)
chr8 (1-72)||(40423972-40424043)
chr8 (1-72)||(504150-504221)
chr8 (1-72)||(1179969-1180040)
chr8 (1-72)||(12831047-12831118)
chr8 (1-76)||(14547918-14547993)
chr8 (1-72)||(15197333-15197404)
chr8 (2-72)||(15048212-15048281)
chr8 (7-72)||(30479509-30479574)
chr8 (2-70)||(10621117-10621185)
chr8 (1-73)||(37038478-37038550)
chr8 (4-72)||(43414613-43414681)
chr8 (7-74)||(16383375-16383442)
chr8 (1-72)||(23122626-23122697)
chr8 (1-72)||(34012325-34012396)
chr8 (7-74)||(34307214-34307281)
chr8 (1-67)||(5957835-5957901)
chr8 (1-74)||(10284660-10284733)
chr8 (1-73)||(44507116-44507188)
chr8 (9-75)||(24307830-24307896)
chr8 (7-73)||(32032724-32032789)
chr8 (9-74)||(24307627-24307692)
chr8 (7-75)||(15258964-15259032)
chr8 (1-72)||(14055621-14055692)
chr8 (4-72)||(20074966-20075034)
chr8 (9-75)||(4854900-4854966)
chr8 (1-53)||(8841461-8841513)
chr8 (7-74)||(16056436-16056503)
chr8 (1-73)||(17443824-17443896)
chr8 (17-73)||(25838196-25838252)
chr8 (3-74)||(42221513-42221584)
chr8 (33-67)||(9122200-9122234)
[»] chr5 (27 HSPs)
chr5 (1-72)||(40145407-40145478)
chr5 (1-67)||(18520913-18520979)
chr5 (1-73)||(2740273-2740345)
chr5 (4-72)||(28177775-28177843)
chr5 (1-72)||(35785199-35785270)
chr5 (1-72)||(35943921-35943992)
chr5 (1-74)||(36732971-36733044)
chr5 (7-74)||(3921300-3921367)
chr5 (1-72)||(14831814-14831885)
chr5 (1-72)||(33149667-33149738)
chr5 (1-72)||(42414331-42414402)
chr5 (4-73)||(6679697-6679766)
chr5 (1-74)||(13811650-13811723)
chr5 (2-75)||(15409640-15409713)
chr5 (7-73)||(2252203-2252269)
chr5 (13-67)||(36875644-36875698)
chr5 (4-72)||(26720516-26720584)
chr5 (4-72)||(26990265-26990333)
chr5 (9-75)||(39688934-39689000)
chr5 (1-74)||(31008986-31009059)
chr5 (9-68)||(10356638-10356698)
chr5 (4-72)||(33825356-33825424)
chr5 (1-73)||(41470445-41470517)
chr5 (11-72)||(20073555-20073616)
chr5 (4-45)||(22512430-22512470)
chr5 (4-52)||(16327921-16327969)
chr5 (2-74)||(38296201-38296273)
[»] chr7 (37 HSPs)
chr7 (1-75)||(7389386-7389460)
chr7 (1-73)||(36361942-36362014)
chr7 (2-74)||(38044195-38044267)
chr7 (1-72)||(4999543-4999614)
chr7 (1-74)||(8080412-8080485)
chr7 (1-73)||(3434561-3434633)
chr7 (1-73)||(36362025-36362097)
chr7 (1-72)||(35137533-35137604)
chr7 (1-72)||(38267040-38267111)
chr7 (1-67)||(3784000-3784066)
chr7 (7-73)||(22343360-22343426)
chr7 (3-72)||(19329842-19329911)
chr7 (1-74)||(19436216-19436289)
chr7 (1-74)||(38837215-38837288)
chr7 (1-74)||(40957705-40957778)
chr7 (1-72)||(8238212-8238284)
chr7 (4-72)||(46374834-46374902)
chr7 (1-72)||(40846142-40846213)
chr7 (2-72)||(21234401-21234471)
chr7 (1-67)||(32951522-32951588)
chr7 (7-73)||(41915740-41915806)
chr7 (4-71)||(35522877-35522944)
chr7 (4-74)||(18207178-18207248)
chr7 (7-77)||(36208168-36208238)
chr7 (4-73)||(26296643-26296712)
chr7 (7-72)||(32564461-32564526)
chr7 (4-73)||(46033833-46033902)
chr7 (6-74)||(10343597-10343665)
chr7 (4-72)||(39255955-39256023)
chr7 (7-74)||(7727904-7727971)
chr7 (11-74)||(35468894-35468957)
chr7 (1-67)||(3694372-3694438)
chr7 (26-74)||(11044186-11044234)
chr7 (16-72)||(31735884-31735940)
chr7 (7-72)||(41423682-41423747)
chr7 (3-74)||(45223040-45223111)
chr7 (4-42)||(16374856-16374894)
[»] scaffold0321 (1 HSPs)
scaffold0321 (1-74)||(10138-10211)
[»] chr6 (22 HSPs)
chr6 (1-65)||(32869685-32869749)
chr6 (1-60)||(31109429-31109488)
chr6 (1-67)||(22880687-22880753)
chr6 (7-76)||(15990077-15990146)
chr6 (1-72)||(29857827-29857898)
chr6 (7-74)||(30341395-30341462)
chr6 (7-72)||(15508059-15508124)
chr6 (4-73)||(31976247-31976316)
chr6 (4-72)||(17598554-17598622)
chr6 (3-74)||(31110792-31110861)
chr6 (1-73)||(11427615-11427689)
chr6 (1-74)||(6209494-6209567)
chr6 (5-67)||(28536519-28536581)
chr6 (1-74)||(15832575-15832648)
chr6 (7-72)||(31953065-31953130)
chr6 (4-72)||(4231548-4231616)
chr6 (4-68)||(9379744-9379808)
chr6 (1-67)||(23128156-23128222)
chr6 (1-65)||(946383-946447)
chr6 (4-74)||(12732480-12732550)
chr6 (4-45)||(30014468-30014508)
chr6 (4-45)||(30736107-30736147)
[»] scaffold0237 (1 HSPs)
scaffold0237 (1-72)||(4029-4100)
[»] scaffold1268 (1 HSPs)
scaffold1268 (1-72)||(958-1029)
[»] scaffold1267 (1 HSPs)
scaffold1267 (1-72)||(958-1029)
[»] scaffold0018 (1 HSPs)
scaffold0018 (7-56)||(152514-152563)
[»] scaffold0110 (1 HSPs)
scaffold0110 (1-72)||(8892-8963)
[»] scaffold0187 (2 HSPs)
scaffold0187 (4-45)||(14124-14164)
scaffold0187 (4-45)||(24452-24492)


Alignment Details
Target: chr2 (Bit Score: 107; Significance: 2e-53; HSPs: 36)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 101 - 235
Target Start/End: Original strand, 31931108 - 31931242
Alignment:
Q  101 attatgctaatgtttaagtcccttatgagtgaagggatttgctatgtttaaggattgattttgatagaaataccaaattaacataagaaaaaagaggagg 200  Q
    ||||||| |||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  31931108 attatgcgaatgtttaaggcccttatgagtgaagggatttgctatgcttaaggattgattttgatagaaagaccaaattaacataagaaaaaagaggagg 31931207  T
Q  201 gttgaatatcaagattcaagtttccttggttctgg 235  Q
    ||| |||||||||||||||| ||||||| ||||||    
T  31931208 gttcaatatcaagattcaagcttccttgtttctgg 31931242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 1 - 73
Target Start/End: Original strand, 7465764 - 7465836
Alignment:
Q  1 actacgtgtcagatttttgtgtggatgtcaaagggtgtattgccatctaagggtgtctatgtatcataactct 73  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||    
T  7465764 actacgtgtcagatttttgtgtgggtgtcaaagggtgtattgccatctaagggtgtctatgtatcattactct 7465836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 1 - 76
Target Start/End: Complemental strand, 9058551 - 9058476
Alignment:
Q  1 actacgtgtcagatttttgtgtggatgtcaaagggtgtattgccatctaagggtgtctatgtatcataactcttat 76  Q
    |||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||| ||||||||    
T  9058551 actacgtgtcagatttttgtgtgggtgtcaaagggtgtattgccacctaagggtgtctatgtatcattactcttat 9058476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 1 - 72
Target Start/End: Complemental strand, 17473091 - 17473020
Alignment:
Q  1 actacgtgtcagatttttgtgtggatgtcaaagggtgtattgccatctaagggtgtctatgtatcataactc 72  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||    
T  17473091 actacgtgtcagatttttgtgtgggtgtcaaagggtgtattgccatctaagggtgtctatgtatcattactc 17473020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 1 - 67
Target Start/End: Original strand, 19930849 - 19930915
Alignment:
Q  1 actacgtgtcagatttttgtgtggatgtcaaagggtgtattgccatctaagggtgtctatgtatcat 67  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  19930849 actacgtgtcagatttttgtgtggatgtcaaagggtgtattgccacctaagggtgtctatgtatcat 19930915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 1 - 67
Target Start/End: Complemental strand, 28863526 - 28863460
Alignment:
Q  1 actacgtgtcagatttttgtgtggatgtcaaagggtgtattgccatctaagggtgtctatgtatcat 67  Q
    |||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||    
T  28863526 actacgtgtcagatttttgtgtgggtgtcaaagggtgtattgccacctaagggtgtctatgtatcat 28863460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 351 - 444
Target Start/End: Original strand, 31934202 - 31934300
Alignment:
Q  351 aagtggagttccataagtgccaattgatttgtcttttga-----catgtcaatgaataattaatattactgataagatatattttagggaaatttatat 444  Q
    |||||||||| ||| | |||||||||| |||||||||||     ||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  31934202 aagtggagtttcatgaatgccaattgaattgtcttttgaacacacatgtcaatgaataattaatattactgataaaatatattttagggaaatttatat 31934300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 3 - 72
Target Start/End: Complemental strand, 27864773 - 27864704
Alignment:
Q  3 tacgtgtcagatttttgtgtggatgtcaaagggtgtattgccatctaagggtgtctatgtatcataactc 72  Q
    |||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||| ||||    
T  27864773 tacgtgtcagatttttgtgtggatgtcaaagggtgtattgccacataagggtgtctatgtatcattactc 27864704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 1 - 74
Target Start/End: Original strand, 33436129 - 33436202
Alignment:
Q  1 actacgtgtcagatttttgtgtggatgtcaaagggtgtattgccatctaagggtgtctatgtatcataactctt 74  Q
    ||||||||| |||||||||||||| |||||||||||||||||||| ||||||||||||||||||||| ||||||    
T  33436129 actacgtgttagatttttgtgtgggtgtcaaagggtgtattgccacctaagggtgtctatgtatcattactctt 33436202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 1 - 74
Target Start/End: Original strand, 38882843 - 38882915
Alignment:
Q  1 actacgtgtcagatttttgtgtggatgtcaaagggtgtattgccatctaagggtgtctatgtatcataactctt 74  Q
    |||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||| ||||||    
T  38882843 actacgtgtcagatttttgtgtggatgtcaaagggt-tattgccacctaagggtgtctatgtatcattactctt 38882915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 2 - 74
Target Start/End: Original strand, 38273172 - 38273244
Alignment:
Q  2 ctacgtgtcagatttttgtgtggatgtcaaagggtgtattgccatctaagggtgtctatgtatcataactctt 74  Q
    ||||||||||||||||||||||| ||| ||||||||||||||||||||||  |||||||||||||||||||||    
T  38273172 ctacgtgtcagatttttgtgtgggtgttaaagggtgtattgccatctaagaatgtctatgtatcataactctt 38273244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 4 - 72
Target Start/End: Original strand, 40613934 - 40614002
Alignment:
Q  4 acgtgtcagatttttgtgtggatgtcaaagggtgtattgccatctaagggtgtctatgtatcataactc 72  Q
    ||||||||||||||||||||| |||||||||||||||||||| |||||| |||||||||||||||||||    
T  40613934 acgtgtcagatttttgtgtgggtgtcaaagggtgtattgccacctaaggatgtctatgtatcataactc 40614002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 1 - 72
Target Start/End: Complemental strand, 4060756 - 4060685
Alignment:
Q  1 actacgtgtcagatttttgtgtggatgtcaaagggtgtattgccatctaagggtgtctatgtatcataactc 72  Q
    |||||||||||||||||||||||||||||||| ||||||||| || ||||||||||||||||||||| ||||    
T  4060756 actacgtgtcagatttttgtgtggatgtcaaaaggtgtattgtcacctaagggtgtctatgtatcattactc 4060685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 1 - 76
Target Start/End: Original strand, 10249411 - 10249486
Alignment:
Q  1 actacgtgtcagatttttgtgtggatgtcaaagggtgtattgccatctaagggtgtctatgtatcataactcttat 76  Q
    |||||||||||||||||||||||| ||||||| ||||||||| || ||||||||||||||||||||| ||||||||    
T  10249411 actacgtgtcagatttttgtgtgggtgtcaaaaggtgtattgtcacctaagggtgtctatgtatcattactcttat 10249486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 1 - 72
Target Start/End: Complemental strand, 40701549 - 40701478
Alignment:
Q  1 actacgtgtcagatttttgtgtggatgtcaaagggtgtattgccatctaagggtgtctatgtatcataactc 72  Q
    |||||||||||||||||||||||| ||||||| |||||||||||| ||||||||||||||||||||| ||||    
T  40701549 actacgtgtcagatttttgtgtgggtgtcaaaaggtgtattgccacctaagggtgtctatgtatcattactc 40701478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 1 - 74
Target Start/End: Complemental strand, 30915534 - 30915461
Alignment:
Q  1 actacgtgtcagatttttgtgtggatgtcaaagggtgtattgccatctaagggtgtctatgtatcataactctt 74  Q
    |||||||||||||||||| |||||  ||||||||||||||||||| ||||||||||||||||||||| ||||||    
T  30915534 actacgtgtcagatttttatgtgggggtcaaagggtgtattgccacctaagggtgtctatgtatcattactctt 30915461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 1 - 73
Target Start/End: Original strand, 5574517 - 5574589
Alignment:
Q  1 actacgtgtcagatttttgtgtggatgtcaaagggtgtattgccatctaagggtgtctatgtatcataactct 73  Q
    |||||||||||||||||| ||||| |||||||||||||||||||| ||||| ||||||||||||||| |||||    
T  5574517 actacgtgtcagatttttatgtgggtgtcaaagggtgtattgccacctaagagtgtctatgtatcattactct 5574589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 1 - 73
Target Start/End: Original strand, 32505677 - 32505749
Alignment:
Q  1 actacgtgtcagatttttgtgtggatgtcaaagggtgtattgccatctaagggtgtctatgtatcataactct 73  Q
    |||||||||||||||||||||||| ||||||| ||||||||| || ||||||||||||||||||||| |||||    
T  32505677 actacgtgtcagatttttgtgtgggtgtcaaaaggtgtattgtcacctaagggtgtctatgtatcattactct 32505749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 1 - 72
Target Start/End: Complemental strand, 13438414 - 13438343
Alignment:
Q  1 actacgtgtcagatttttgtgtggatgtcaaagggtgtattgccatctaagggtgtctatgtatcataactc 72  Q
    |||||||||||||||||||||||| ||||||||| ||||||| || ||||||||||||||||||||| ||||    
T  13438414 actacgtgtcagatttttgtgtgggtgtcaaaggatgtattgtcacctaagggtgtctatgtatcattactc 13438343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 1 - 72
Target Start/End: Original strand, 28381684 - 28381755
Alignment:
Q  1 actacgtgtcagatttttgtgtggatgtcaaagggtgtattgccatctaagggtgtctatgtatcataactc 72  Q
    |||||||||||||||||||||||| |||| || |||||||||||| ||||||||||||||||||||| ||||    
T  28381684 actacgtgtcagatttttgtgtgggtgtcgaaaggtgtattgccacctaagggtgtctatgtatcattactc 28381755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 4 - 73
Target Start/End: Complemental strand, 33436279 - 33436210
Alignment:
Q  4 acgtgtcagatttttgtgtggatgtcaaagggtgtattgccatctaagggtgtctatgtatcataactct 73  Q
    ||||||||||||||| ||||| ||||||| ||||||||||||||||||| |||||||||||||| |||||    
T  33436279 acgtgtcagatttttatgtgggtgtcaaaaggtgtattgccatctaaggatgtctatgtatcattactct 33436210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 2 - 73
Target Start/End: Complemental strand, 2533193 - 2533123
Alignment:
Q  2 ctacgtgtcagatttttgtgtggatgtcaaagggtgtattgccatctaagggtgtctatgtatcataactct 73  Q
    ||||||||||||||||||||||| ||||||||| ||||||||||  ||||| ||||||||||||||||||||    
T  2533193 ctacgtgtcagatttttgtgtgg-tgtcaaaggatgtattgccacttaaggatgtctatgtatcataactct 2533123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 7 - 74
Target Start/End: Original strand, 26891539 - 26891606
Alignment:
Q  7 tgtcagatttttgtgtggatgtcaaagggtgtattgccatctaagggtgtctatgtatcataactctt 74  Q
    |||||||||||||||||| |||| | ||||||||||||| ||||||||| ||||||||||||||||||    
T  26891539 tgtcagatttttgtgtgggtgtctaggggtgtattgccacctaagggtggctatgtatcataactctt 26891606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 1 - 74
Target Start/End: Complemental strand, 20700886 - 20700813
Alignment:
Q  1 actacgtgtcagatttttgtgtggatgtcaaagggtgtattgccatctaagggtgtctatgtatcataactctt 74  Q
    |||||||||||||||||||||| |  |||||||||||||||||||  ||||| |||||||||||||| ||||||    
T  20700886 actacgtgtcagatttttgtgtaggagtcaaagggtgtattgccacataaggatgtctatgtatcattactctt 20700813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 7 - 72
Target Start/End: Complemental strand, 43490186 - 43490121
Alignment:
Q  7 tgtcagatttttgtgtggatgtcaaagggtgtattgccatctaagggtgtctatgtatcataactc 72  Q
    |||||||||||||||||| |||||| |||||||||| || |||||||||| |||||||||||||||    
T  43490186 tgtcagatttttgtgtgggtgtcaaggggtgtattgtcacctaagggtgtttatgtatcataactc 43490121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 7 - 67
Target Start/End: Complemental strand, 41575202 - 41575142
Alignment:
Q  7 tgtcagatttttgtgtggatgtcaaagggtgtattgccatctaagggtgtctatgtatcat 67  Q
    ||||| ||||||||||| ||||||||||||||||| |||||||||| ||||||||||||||    
T  41575202 tgtcaaatttttgtgtgaatgtcaaagggtgtattaccatctaaggatgtctatgtatcat 41575142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 7 - 74
Target Start/End: Complemental strand, 13365418 - 13365349
Alignment:
Q  7 tgtcagatttttgtgtggatgtcaaagggtgtattgccatctaagg--gtgtctatgtatcataactctt 74  Q
    |||||||||||||||||| |||||| |||| |||||||||||||||  |||| |||||||||||||||||    
T  13365418 tgtcagatttttgtgtgggtgtcaaggggtatattgccatctaagggtgtgtttatgtatcataactctt 13365349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 4 - 74
Target Start/End: Complemental strand, 42257261 - 42257191
Alignment:
Q  4 acgtgtcagatttttgtgtggatgtcaaagggtgtattgccatctaagggtgtctatgtatcataactctt 74  Q
    ||||||||||||||| ||||| ||||||| | |||||||||| |||| | |||||||||||||||||||||    
T  42257261 acgtgtcagatttttatgtgggtgtcaaatgatgtattgccacctaaagatgtctatgtatcataactctt 42257191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 7 - 72
Target Start/End: Original strand, 17820039 - 17820104
Alignment:
Q  7 tgtcagatttttgtgtggatgtcaaagggtgtattgccatctaagggtgtctatgtatcataactc 72  Q
    |||||||||||||||||| |||||| ||||||||||||| |||  | |||||||||||||||||||    
T  17820039 tgtcagatttttgtgtgggtgtcaaggggtgtattgccacctatagttgtctatgtatcataactc 17820104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #30
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 4 - 73
Target Start/End: Complemental strand, 36168904 - 36168835
Alignment:
Q  4 acgtgtcagatttttgtgtggatgtcaaagggtgtattgccatctaagggtgtctatgtatcataactct 73  Q
    |||||||| ||||||||||||  || ||||| ||||||| ||||||||| ||||||||||||||||||||    
T  36168904 acgtgtcaaatttttgtgtgggagttaaaggatgtattgtcatctaaggatgtctatgtatcataactct 36168835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #31
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 7 - 74
Target Start/End: Original strand, 45097770 - 45097837
Alignment:
Q  7 tgtcagatttttgtgtggatgtcaaagggtgtattgccatctaagggtgtctatgtatcataactctt 74  Q
    |||||||||||||| ||| |||||| || |||||||||| |||||| ||| |||||||||||||||||    
T  45097770 tgtcagatttttgtatgggtgtcaagggatgtattgccacctaaggatgtttatgtatcataactctt 45097837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #32
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 7 - 72
Target Start/End: Complemental strand, 38732419 - 38732354
Alignment:
Q  7 tgtcagatttttgtgtggatgtcaaagggtgtattgccatctaagggtgtctatgtatcataactc 72  Q
    |||||||||||||||||| |||||| || ||||||| ||  ||||||||| |||||||||||||||    
T  38732419 tgtcagatttttgtgtgggtgtcaagggatgtattgtcacataagggtgtttatgtatcataactc 38732354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #33
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 7 - 54
Target Start/End: Original strand, 2997522 - 2997569
Alignment:
Q  7 tgtcagatttttgtgtggatgtcaaagggtgtattgccatctaagggt 54  Q
    |||||||||||||||||| |||||| ||||||||||||| ||||||||    
T  2997522 tgtcagatttttgtgtgggtgtcaaggggtgtattgccacctaagggt 2997569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #34
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 3 - 75
Target Start/End: Complemental strand, 17823853 - 17823781
Alignment:
Q  3 tacgtgtcagatttttgtgtggatgtcaaagggtgtattgccatctaagggtgtctatgtatcataactctta 75  Q
    |||||||||||||||||||||| |||  | |  |||||||||| |||||| ||| |||||||||| |||||||    
T  17823853 tacgtgtcagatttttgtgtgggtgttcaggaatgtattgccacctaaggatgtatatgtatcattactctta 17823781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #35
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 11 - 66
Target Start/End: Complemental strand, 3440040 - 3439985
Alignment:
Q  11 agatttttgtgtggatgtcaaagggtgtattgccatctaagggtgtctatgtatca 66  Q
    |||||||||||||| |||| | | ||||||||||| ||||||||||||| ||||||    
T  3440040 agatttttgtgtgggtgtccaggagtgtattgccacctaagggtgtctacgtatca 3439985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #36
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 7 - 74
Target Start/End: Original strand, 15428775 - 15428842
Alignment:
Q  7 tgtcagatttttgtgtggatgtcaaagggtgtattgccatctaagggtgtctatgtatcataactctt 74  Q
    |||||||||||||||||  ||| || |||||||| ||||  ||||| ||| |||||||||||||||||    
T  15428775 tgtcagatttttgtgtgagtgttaaggggtgtatggccacataaggatgtttatgtatcataactctt 15428842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 64; Significance: 8e-28; HSPs: 37)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 1 - 80
Target Start/End: Complemental strand, 49607485 - 49607406
Alignment:
Q  1 actacgtgtcagatttttgtgtggatgtcaaagggtgtattgccatctaagggtgtctatgtatcataactcttatgtta 80  Q
    |||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||| |||||| |||||    
T  49607485 actacgtgtcagatttttgtgtgggtgtcaaagggtgtattgccacctaagggtgtctatgtatcattactcttttgtta 49607406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 1 - 75
Target Start/End: Original strand, 11095382 - 11095456
Alignment:
Q  1 actacgtgtcagatttttgtgtggatgtcaaagggtgtattgccatctaagggtgtctatgtatcataactctta 75  Q
    |||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||| |||||||    
T  11095382 actacgtgtcagatttttgtgtgggtgtcaaagggtgtattgccacctaagggtgtctatgtatcattactctta 11095456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 1 - 68
Target Start/End: Complemental strand, 52629371 - 52629304
Alignment:
Q  1 actacgtgtcagatttttgtgtggatgtcaaagggtgtattgccatctaagggtgtctatgtatcata 68  Q
    |||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||    
T  52629371 actacgtgtcagatttttgtgtgggtgtcaaagggtgtattgccacctaagggtgtctatgtatcata 52629304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 1 - 72
Target Start/End: Complemental strand, 53982082 - 53982011
Alignment:
Q  1 actacgtgtcagatttttgtgtggatgtcaaagggtgtattgccatctaagggtgtctatgtatcataactc 72  Q
    |||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||| ||||    
T  53982082 actacgtgtcagatttttgtgtgggtgtcaaagggtgtattgccacctaagggtgtctatgtatcattactc 53982011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 1 - 75
Target Start/End: Original strand, 33118880 - 33118954
Alignment:
Q  1 actacgtgtcagatttttgtgtggatgtcaaagggtgtattgccatctaagggtgtctatgtatcataactctta 75  Q
    ||||||||||| |||||||||||| ||||||||||||||||| || |||||||||||||||||||||||||||||    
T  33118880 actacgtgtcaaatttttgtgtgggtgtcaaagggtgtattgtcacctaagggtgtctatgtatcataactctta 33118954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 1 - 75
Target Start/End: Original strand, 54868924 - 54868998
Alignment:
Q  1 actacgtgtcagatttttgtgtggatgtcaaagggtgtattgccatctaagggtgtctatgtatcataactctta 75  Q
    |||||||||||||||||||||||| ||||||| |||||||||||| ||||||||||||||||||||| |||||||    
T  54868924 actacgtgtcagatttttgtgtgggtgtcaaaaggtgtattgccacctaagggtgtctatgtatcattactctta 54868998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 1 - 74
Target Start/End: Original strand, 36707453 - 36707526
Alignment:
Q  1 actacgtgtcagatttttgtgtggatgtcaaagggtgtattgccatctaagggtgtctatgtatcataactctt 74  Q
    |||||||||||||||||||||||||||||||||||||||||| || |||||||| |||||||||||| ||||||    
T  36707453 actacgtgtcagatttttgtgtggatgtcaaagggtgtattgtcacctaagggtatctatgtatcattactctt 36707526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 1 - 72
Target Start/End: Complemental strand, 33644271 - 33644200
Alignment:
Q  1 actacgtgtcagatttttgtgtggatgtcaaagggtgtattgccatctaagggtgtctatgtatcataactc 72  Q
    |||||||||||||||||||||||| |||||||||||||||||||| | ||||||||||||||||||| ||||    
T  33644271 actacgtgtcagatttttgtgtgggtgtcaaagggtgtattgccacccaagggtgtctatgtatcattactc 33644200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 4 - 74
Target Start/End: Original strand, 11347954 - 11348024
Alignment:
Q  4 acgtgtcagatttttgtgtggatgtcaaagggtgtattgccatctaagggtgtctatgtatcataactctt 74  Q
    ||||||||||||||||||||||||||||||| ||||||| || |||||| |||||||||||||||||||||    
T  11347954 acgtgtcagatttttgtgtggatgtcaaaggatgtattgtcacctaaggatgtctatgtatcataactctt 11348024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 1 - 74
Target Start/End: Original strand, 27714920 - 27714993
Alignment:
Q  1 actacgtgtcagatttttgtgtggatgtcaaagggtgtattgccatctaagggtgtctatgtatcataactctt 74  Q
    |||||||||||||||||||||||| |||||||||||||||| ||| |||| |||||||||||||||| ||||||    
T  27714920 actacgtgtcagatttttgtgtgggtgtcaaagggtgtattaccacctaaaggtgtctatgtatcattactctt 27714993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 4 - 72
Target Start/End: Original strand, 26141564 - 26141632
Alignment:
Q  4 acgtgtcagatttttgtgtggatgtcaaagggtgtattgccatctaagggtgtctatgtatcataactc 72  Q
    ||||||||||||||||||||| ||| |||||||||||||||| |||||| |||||||||||||||||||    
T  26141564 acgtgtcagatttttgtgtgggtgttaaagggtgtattgccacctaaggatgtctatgtatcataactc 26141632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 4 - 72
Target Start/End: Complemental strand, 47531933 - 47531865
Alignment:
Q  4 acgtgtcagatttttgtgtggatgtcaaagggtgtattgccatctaagggtgtctatgtatcataactc 72  Q
    |||||||||||| |||||||||||| ||| ||||||||||||||||||| |||||||||||||||||||    
T  47531933 acgtgtcagattcttgtgtggatgttaaaaggtgtattgccatctaaggatgtctatgtatcataactc 47531865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 10 - 73
Target Start/End: Original strand, 36331416 - 36331479
Alignment:
Q  10 cagatttttgtgtggatgtcaaagggtgtattgccatctaagggtgtctatgtatcataactct 73  Q
    |||||||||||||||||||||| ||||| |||||||||||||||||| ||||||||||||||||    
T  36331416 cagatttttgtgtggatgtcaaggggtgcattgccatctaagggtgtttatgtatcataactct 36331479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 7 - 69
Target Start/End: Complemental strand, 26754760 - 26754698
Alignment:
Q  7 tgtcagatttttgtgtggatgtcaaagggtgtattgccatctaagggtgtctatgtatcataa 69  Q
    ||||||||||||||||||||||| ||||||||||||||| ||||||||||||||| |||||||    
T  26754760 tgtcagatttttgtgtggatgtccaagggtgtattgccacctaagggtgtctatgaatcataa 26754698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 1 - 67
Target Start/End: Complemental strand, 31456760 - 31456694
Alignment:
Q  1 actacgtgtcagatttttgtgtggatgtcaaagggtgtattgccatctaagggtgtctatgtatcat 67  Q
    |||||||||||||||||||||||| |||||||||||||||||||  ||| |||||||||||||||||    
T  31456760 actacgtgtcagatttttgtgtgggtgtcaaagggtgtattgccgcctatgggtgtctatgtatcat 31456694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 1 - 73
Target Start/End: Complemental strand, 17470476 - 17470404
Alignment:
Q  1 actacgtgtcagatttttgtgtggatgtcaaagggtgtattgccatctaagggtgtctatgtatcataactct 73  Q
    |||||||||||||||||||||||| ||| ||| |||||||||||| |||| |||||||||||||||| |||||    
T  17470476 actacgtgtcagatttttgtgtgggtgttaaaaggtgtattgccacctaaaggtgtctatgtatcattactct 17470404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 4 - 72
Target Start/End: Original strand, 51419392 - 51419460
Alignment:
Q  4 acgtgtcagatttttgtgtggatgtcaaagggtgtattgccatctaagggtgtctatgtatcataactc 72  Q
    ||||||||||||||||||||| ||| ||||| ||||||| ||||||||| |||||||||||||||||||    
T  51419392 acgtgtcagatttttgtgtgggtgttaaaggatgtattgtcatctaaggatgtctatgtatcataactc 51419460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 1 - 72
Target Start/End: Complemental strand, 8076464 - 8076393
Alignment:
Q  1 actacgtgtcagatttttgtgtggatgtcaaagggtgtattgccatctaagggtgtctatgtatcataactc 72  Q
    ||||||||| |||||||||||||| |||||||||||||| ||||| |||||||||| |||||||||| ||||    
T  8076464 actacgtgttagatttttgtgtgggtgtcaaagggtgtactgccacctaagggtgtttatgtatcattactc 8076393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 1 - 67
Target Start/End: Original strand, 48587120 - 48587186
Alignment:
Q  1 actacgtgtcagatttttgtgtggatgtcaaagggtgtattgccatctaagggtgtctatgtatcat 67  Q
    |||||||||||||||||| ||| | |||||||||||||||||||| |||||||| ||||||||||||    
T  48587120 actacgtgtcagatttttatgtaggtgtcaaagggtgtattgccacctaagggtatctatgtatcat 48587186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 1 - 73
Target Start/End: Complemental strand, 9563070 - 9562998
Alignment:
Q  1 actacgtgtcagatttttgtgtggatgtcaaagggtgtattgccatctaagggtgtctatgtatcataactct 73  Q
    |||||||||||||||||| | ||||||||||||| ||||||| ||||||| ||||| |||||||||| |||||    
T  9563070 actacgtgtcagatttttatatggatgtcaaaggttgtattgtcatctaatggtgtttatgtatcattactct 9562998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 7 - 72
Target Start/End: Original strand, 14623874 - 14623939
Alignment:
Q  7 tgtcagatttttgtgtggatgtcaaagggtgtattgccatctaagggtgtctatgtatcataactc 72  Q
    |||||||||||| ||||| |||||| ||||||||||||| |||||| |||||||||||||| ||||    
T  14623874 tgtcagatttttatgtgggtgtcaaggggtgtattgccacctaaggatgtctatgtatcattactc 14623939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 4 - 73
Target Start/End: Original strand, 24699986 - 24700055
Alignment:
Q  4 acgtgtcagatttttgtgtggatgtcaaagggtgtattgccatctaagggtgtctatgtatcataactct 73  Q
    ||||| ||||||||| ||||| ||||||| |||||||||||| |||||| |||||||||||||| |||||    
T  24699986 acgtgccagatttttatgtgggtgtcaaaaggtgtattgccaactaaggatgtctatgtatcattactct 24700055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 7 - 72
Target Start/End: Original strand, 45058588 - 45058652
Alignment:
Q  7 tgtcagatttttgtgtggatgtcaaagggtgtattgccatctaagggtgtctatgtatcataactc 72  Q
    |||||||||||| ||||| |||||| ||||||||||||| |||||||||| |||||||||||||||    
T  45058588 tgtcagatttttatgtgggtgtcaa-gggtgtattgccacctaagggtgtttatgtatcataactc 45058652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 4 - 72
Target Start/End: Original strand, 20764947 - 20765015
Alignment:
Q  4 acgtgtcagatttttgtgtggatgtcaaagggtgtattgccatctaagggtgtctatgtatcataactc 72  Q
    ||||||||||||||||||||| ||| |||| ||||||| ||| |||||| ||||||||| |||||||||    
T  20764947 acgtgtcagatttttgtgtgggtgttaaagagtgtattaccacctaaggatgtctatgtctcataactc 20765015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 4 - 75
Target Start/End: Original strand, 41189796 - 41189867
Alignment:
Q  4 acgtgtcagatttttgtgtggatgtcaaagggtgtattgccatctaagggtgtctatgtatcataactctta 75  Q
    |||||||| |||||| ||||| ||||||| | |||||||||| |||||| ||| ||||||||||||||||||    
T  41189796 acgtgtcaaatttttatgtgggtgtcaaatgatgtattgccacctaaggatgtatatgtatcataactctta 41189867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 1 - 67
Target Start/End: Original strand, 30801762 - 30801828
Alignment:
Q  1 actacgtgtcagatttttgtgtggatgtcaaagggtgtattgccatctaagggtgtctatgtatcat 67  Q
    ||||| ||||| |||||||||||| | ||||||||||||||  || |||||||||||||||||||||    
T  30801762 actacatgtcatatttttgtgtgggtatcaaagggtgtattatcacctaagggtgtctatgtatcat 30801828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 4 - 73
Target Start/End: Complemental strand, 8956830 - 8956761
Alignment:
Q  4 acgtgtcagatttttgtgtggatgtcaaagggtgtattgccatctaagggtgtctatgtatcataactct 73  Q
    |||||||| |||||| ||||| ||||||||| ||||||||||  ||||| |||||||||||||| |||||    
T  8956830 acgtgtcacatttttatgtgggtgtcaaaggatgtattgccacataaggatgtctatgtatcattactct 8956761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 4 - 73
Target Start/End: Complemental strand, 35536694 - 35536625
Alignment:
Q  4 acgtgtcagatttttgtgtggatgtcaaagggtgtattgccatctaagggtgtctatgtatcataactct 73  Q
    |||||||| |||||| ||||| ||||||| ||||||||||||  ||||| |||||||||||||| |||||    
T  35536694 acgtgtcacatttttatgtgggtgtcaaatggtgtattgccacataaggatgtctatgtatcattactct 35536625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 7 - 75
Target Start/End: Complemental strand, 11907436 - 11907368
Alignment:
Q  7 tgtcagatttttgtgtggatgtcaaagggtgtattgccatctaagggtgtctatgtatcataactctta 75  Q
    |||||||||||||||||  |||  | | |||||||| || |||||||||||||||||||||||||||||    
T  11907436 tgtcagatttttgtgtgagtgttcaggtgtgtattgtcacctaagggtgtctatgtatcataactctta 11907368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 4 - 67
Target Start/End: Original strand, 13898087 - 13898150
Alignment:
Q  4 acgtgtcagatttttgtgtggatgtcaaagggtgtattgccatctaagggtgtctatgtatcat 67  Q
    ||||||||||||||| ||||| |||||| ||||||||||||| |||||| ||| ||| ||||||    
T  13898087 acgtgtcagatttttatgtgggtgtcaaggggtgtattgccacctaaggatgtttatctatcat 13898150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 7 - 74
Target Start/End: Complemental strand, 35093650 - 35093583
Alignment:
Q  7 tgtcagatttttgtgtggatgtcaaagggtgtattgccatctaagggtgtctatgtatcataactctt 74  Q
    ||||||||||||| |||||||||||| | ||||||| || |||| | |||||||||||| ||||||||    
T  35093650 tgtcagatttttgcgtggatgtcaaatgttgtattgtcacctaaagttgtctatgtatcgtaactctt 35093583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 8 - 73
Target Start/End: Original strand, 48375742 - 48375807
Alignment:
Q  8 gtcagatttttgtgtggatgtcaaagggtgtattgccatctaagggtgtctatgtatcataactct 73  Q
    ||||||||||||| ||||| |  | |||||||||| || ||||||||||||||| |||||||||||    
T  48375742 gtcagatttttgtatggattttcaggggtgtattgtcacctaagggtgtctatgaatcataactct 48375807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 4 - 76
Target Start/End: Original strand, 35965806 - 35965878
Alignment:
Q  4 acgtgtcagatttttgtgtggatgtcaaagggtgtattgccatctaagggtgtctatgtatcataactcttat 76  Q
    ||||||||||||||| ||||| ||||||||| ||||||  ||  ||||| ||| |||||||||| ||||||||    
T  35965806 acgtgtcagatttttatgtgggtgtcaaaggatgtattatcacttaaggatgtatatgtatcattactcttat 35965878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 7 - 75
Target Start/End: Original strand, 1758491 - 1758561
Alignment:
Q  7 tgtcagatttttgtgtggatgtcaaaggg--tgtattgccatctaagggtgtctatgtatcataactctta 75  Q
    |||||||||||||||||| |||||| |||  |||||||| | ||| || || |||||||||||||||||||    
T  1758491 tgtcagatttttgtgtgggtgtcaaggggggtgtattgcaacctatggttgactatgtatcataactctta 1758561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #35
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 9 - 72
Target Start/End: Complemental strand, 41080771 - 41080709
Alignment:
Q  9 tcagatttttgtgtggatgtcaaagggtgtattgccatctaagggtgtctatgtatcataactc 72  Q
    ||||||||||| |||| ||||||||||||| |||| | |||||| |||||||||||||| ||||    
T  41080771 tcagatttttgcgtgggtgtcaaagggtgttttgcta-ctaaggatgtctatgtatcattactc 41080709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #36
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 4 - 45
Target Start/End: Original strand, 1078343 - 1078383
Alignment:
Q  4 acgtgtcagatttttgtgtggatgtcaaagggtgtattgcca 45  Q
    |||||||||| |||||||||||||| ||||||||||||||||    
T  1078343 acgtgtcagaattttgtgtggatgt-aaagggtgtattgcca 1078383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #37
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 4 - 45
Target Start/End: Original strand, 36150255 - 36150295
Alignment:
Q  4 acgtgtcagatttttgtgtggatgtcaaagggtgtattgcca 45  Q
    |||||||||| |||||||||||||| ||||||||||||||||    
T  36150255 acgtgtcagaattttgtgtggatgt-aaagggtgtattgcca 36150295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 62; Significance: 1e-26; HSPs: 34)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 1 - 82
Target Start/End: Original strand, 48183078 - 48183159
Alignment:
Q  1 actacgtgtcagatttttgtgtggatgtcaaagggtgtattgccatctaagggtgtctatgtatcataactcttatgttata 82  Q
    |||||||||||||||||||||||| ||||||||||||||||||||  |||||||||||||||||||| |||||||| |||||    
T  48183078 actacgtgtcagatttttgtgtgggtgtcaaagggtgtattgccacgtaagggtgtctatgtatcattactcttatattata 48183159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 1 - 72
Target Start/End: Complemental strand, 41236418 - 41236347
Alignment:
Q  1 actacgtgtcagatttttgtgtggatgtcaaagggtgtattgccatctaagggtgtctatgtatcataactc 72  Q
    |||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||| ||||    
T  41236418 actacgtgtcagatttttgtgtggatgtcaaaaggtgtattgccacctaagggtgtctatgtatcattactc 41236347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 7 - 81
Target Start/End: Complemental strand, 55475256 - 55475182
Alignment:
Q  7 tgtcagatttttgtgtggatgtcaaagggtgtattgccatctaagggtgtctatgtatcataactcttatgttat 81  Q
    |||||||||||||||||| |||||||||||||||||||| |||||| ||| ||||||||||||||||||||||||    
T  55475256 tgtcagatttttgtgtgggtgtcaaagggtgtattgccacctaaggatgtttatgtatcataactcttatgttat 55475182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 1 - 74
Target Start/End: Original strand, 480476 - 480549
Alignment:
Q  1 actacgtgtcagatttttgtgtggatgtcaaagggtgtattgccatctaagggtgtctatgtatcataactctt 74  Q
    |||||||||||||||||||||||| ||||||||||||||||| || ||||||||||||||||||||| ||||||    
T  480476 actacgtgtcagatttttgtgtgggtgtcaaagggtgtattgtcacctaagggtgtctatgtatcattactctt 480549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 1 - 74
Target Start/End: Complemental strand, 29239957 - 29239884
Alignment:
Q  1 actacgtgtcagatttttgtgtggatgtcaaagggtgtattgccatctaagggtgtctatgtatcataactctt 74  Q
    ||||||||| |||||||||||||||||||||| |||||||||||| ||||||||||||||||||||| ||||||    
T  29239957 actacgtgttagatttttgtgtggatgtcaaatggtgtattgccacctaagggtgtctatgtatcattactctt 29239884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 1 - 74
Target Start/End: Original strand, 50052457 - 50052530
Alignment:
Q  1 actacgtgtcagatttttgtgtggatgtcaaagggtgtattgccatctaagggtgtctatgtatcataactctt 74  Q
    |||||||||||||||||||||||| |||||||||||||||||||| |||||| |||||||||||||| ||||||    
T  50052457 actacgtgtcagatttttgtgtgggtgtcaaagggtgtattgccacctaaggatgtctatgtatcattactctt 50052530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 1 - 72
Target Start/End: Complemental strand, 6034115 - 6034044
Alignment:
Q  1 actacgtgtcagatttttgtgtggatgtcaaagggtgtattgccatctaagggtgtctatgtatcataactc 72  Q
    ||||| |||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||| ||||    
T  6034115 actacatgtcagatttttgtgtgggtgtcaaagggtgtattgccacctaagggtgtctatgtatcattactc 6034044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 1 - 72
Target Start/End: Original strand, 11511491 - 11511562
Alignment:
Q  1 actacgtgtcagatttttgtgtggatgtcaaagggtgtattgccatctaagggtgtctatgtatcataactc 72  Q
    |||||||||||||||||| ||||| |||||||||||||||||||| ||||||||||||||||||||| ||||    
T  11511491 actacgtgtcagatttttatgtgggtgtcaaagggtgtattgccacctaagggtgtctatgtatcattactc 11511562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 1 - 75
Target Start/End: Complemental strand, 23608306 - 23608232
Alignment:
Q  1 actacgtgtcagatttttgtgtggatgtcaaagggtgtattgccatctaagggtgtctatgtatcataactctta 75  Q
    |||||||||||||||||||||||| ||||||| ||||||||| ||||||||||||||||| |||||| |||||||    
T  23608306 actacgtgtcagatttttgtgtgggtgtcaaatggtgtattgtcatctaagggtgtctatatatcattactctta 23608232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 1 - 73
Target Start/End: Original strand, 29234274 - 29234346
Alignment:
Q  1 actacgtgtcagatttttgtgtggatgtcaaagggtgtattgccatctaagggtgtctatgtatcataactct 73  Q
    |||||||||||||||||||||  | | |||||||||||||||||||||||||||||||||||||||| |||||    
T  29234274 actacgtgtcagatttttgtgaaggtatcaaagggtgtattgccatctaagggtgtctatgtatcattactct 29234346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 5 - 72
Target Start/End: Complemental strand, 40574846 - 40574779
Alignment:
Q  5 cgtgtcagatttttgtgtggatgtcaaagggtgtattgccatctaagggtgtctatgtatcataactc 72  Q
    |||||||||||||||||||| |||||||||||||||| ||| |||||| |||||||||||||||||||    
T  40574846 cgtgtcagatttttgtgtgggtgtcaaagggtgtattaccacctaaggatgtctatgtatcataactc 40574779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 7 - 73
Target Start/End: Complemental strand, 47986273 - 47986207
Alignment:
Q  7 tgtcagatttttgtgtggatgtcaaagggtgtattgccatctaagggtgtctatgtatcataactct 73  Q
    ||||||||||||||||||||||||| || |||||||||| |||||||||| ||||||||||||||||    
T  47986273 tgtcagatttttgtgtggatgtcaagggatgtattgccacctaagggtgtttatgtatcataactct 47986207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 1 - 74
Target Start/End: Original strand, 24995136 - 24995209
Alignment:
Q  1 actacgtgtcagatttttgtgtggatgtcaaagggtgtattgccatctaagggtgtctatgtatcataactctt 74  Q
    ||||||||||| |||||| ||||| |||||||||||||||||||||||||||||||| || |||||| ||||||    
T  24995136 actacgtgtcaaatttttatgtgggtgtcaaagggtgtattgccatctaagggtgtccatatatcattactctt 24995209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 1 - 74
Target Start/End: Original strand, 42044396 - 42044469
Alignment:
Q  1 actacgtgtcagatttttgtgtggatgtcaaagggtgtattgccatctaagggtgtctatgtatcataactctt 74  Q
    |||||||||||||||||||||||| |||  |||| |||||||||| ||||||||||||||||||||| ||||||    
T  42044396 actacgtgtcagatttttgtgtgggtgtacaaggatgtattgccacctaagggtgtctatgtatcattactctt 42044469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 4 - 72
Target Start/End: Original strand, 50526203 - 50526271
Alignment:
Q  4 acgtgtcagatttttgtgtggatgtcaaagggtgtattgccatctaagggtgtctatgtatcataactc 72  Q
    ||||||||||||||||||||| |||||||||||||||||||| |||| | |||||||||||||| ||||    
T  50526203 acgtgtcagatttttgtgtgggtgtcaaagggtgtattgccacctaaagatgtctatgtatcattactc 50526271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 1 - 72
Target Start/End: Complemental strand, 3481725 - 3481654
Alignment:
Q  1 actacgtgtcagatttttgtgtggatgtcaaagggtgtattgccatctaagggtgtctatgtatcataactc 72  Q
    |||| ||||||||||||||||||| |||||||| ||||||||||| |||| |||||||||||||||| ||||    
T  3481725 actatgtgtcagatttttgtgtgggtgtcaaagagtgtattgccacctaaaggtgtctatgtatcattactc 3481654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 7 - 74
Target Start/End: Original strand, 19670751 - 19670818
Alignment:
Q  7 tgtcagatttttgtgtggatgtcaaagggtgtattgccatctaagggtgtctatgtatcataactctt 74  Q
    |||||||||||||||||  |||||| ||||||||||||| |||||||||| |||||||||||||||||    
T  19670751 tgtcagatttttgtgtgagtgtcaaggggtgtattgccacctaagggtgtttatgtatcataactctt 19670818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 1 - 72
Target Start/End: Original strand, 54473562 - 54473633
Alignment:
Q  1 actacgtgtcagatttttgtgtggatgtcaaagggtgtattgccatctaagggtgtctatgtatcataactc 72  Q
    ||||||||| |||||||||||||| ||||||| ||||||||| || ||||||||||||||||||||| ||||    
T  54473562 actacgtgttagatttttgtgtgggtgtcaaatggtgtattgtcacctaagggtgtctatgtatcattactc 54473633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 6 - 72
Target Start/End: Complemental strand, 31910258 - 31910192
Alignment:
Q  6 gtgtcagatttttgtgtggatgtcaaagggtgtattgccatctaagggtgtctatgtatcataactc 72  Q
    ||||||||||||||||||| |||||||| |||||||| || |||||| |||||||||||||||||||    
T  31910258 gtgtcagatttttgtgtgggtgtcaaagagtgtattgtcacctaaggatgtctatgtatcataactc 31910192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 7 - 75
Target Start/End: Original strand, 29547994 - 29548062
Alignment:
Q  7 tgtcagatttttgtgtggatgtcaaagggtgtattgccatctaagggtgtctatgtatcataactctta 75  Q
    |||||||||||||||||| |||||| || |||||||||| |||||| ||| ||||||||||||||||||    
T  29547994 tgtcagatttttgtgtgggtgtcaagggatgtattgccacctaaggatgtttatgtatcataactctta 29548062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 7 - 74
Target Start/End: Complemental strand, 32767023 - 32766956
Alignment:
Q  7 tgtcagatttttgtgtggatgtcaaagggtgtattgccatctaagggtgtctatgtatcataactctt 74  Q
    |||||||||||||| ||| |||||| ||||||||||||| ||||| |||| |||||||||||||||||    
T  32767023 tgtcagatttttgtatgggtgtcaaggggtgtattgccacctaagagtgtttatgtatcataactctt 32766956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 7 - 73
Target Start/End: Original strand, 44536781 - 44536846
Alignment:
Q  7 tgtcagatttttgtgtggatgtcaaagggtgtattgccatctaagggtgtctatgtatcataactct 73  Q
    ||||||||||||||||||||||||| ||||||||||||| ||||  |||| ||||||||||||||||    
T  44536781 tgtcagatttttgtgtggatgtcaa-gggtgtattgccacctaaaagtgtttatgtatcataactct 44536846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 7 - 73
Target Start/End: Original strand, 50813927 - 50813993
Alignment:
Q  7 tgtcagatttttgtgtggatgtcaaagggtgtattgccatctaagggtgtctatgtatcataactct 73  Q
    |||||||||||||||||| |||||| ||||||||| ||| ||||| |||| ||||||||||||||||    
T  50813927 tgtcagatttttgtgtgggtgtcaaggggtgtattaccacctaagagtgtttatgtatcataactct 50813993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 7 - 72
Target Start/End: Original strand, 18924530 - 18924595
Alignment:
Q  7 tgtcagatttttgtgtggatgtcaaagggtgtattgccatctaagggtgtctatgtatcataactc 72  Q
    |||||||||||||||||||| |||| ||||||||||||| |||||||| | |||| ||||||||||    
T  18924530 tgtcagatttttgtgtggatatcaaggggtgtattgccacctaagggtatttatggatcataactc 18924595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 7 - 72
Target Start/End: Original strand, 55079749 - 55079814
Alignment:
Q  7 tgtcagatttttgtgtggatgtcaaagggtgtattgccatctaagggtgtctatgtatcataactc 72  Q
    |||||||||||||| ||| ||||||  |||||||||||| |||||||||| |||||||||||||||    
T  55079749 tgtcagatttttgtatgggtgtcaagaggtgtattgccacctaagggtgtttatgtatcataactc 55079814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 1 - 81
Target Start/End: Complemental strand, 29977956 - 29977876
Alignment:
Q  1 actacgtgtcagatttttgtgtggatgtcaaagggtgtattgccatctaagggtgtctatgtatcataactcttatgttat 81  Q
    |||||||||||||||||||||||| ||| || ||||||||||||| ||| || | | |||||||||| |||||||| ||||    
T  29977956 actacgtgtcagatttttgtgtgggtgttaaggggtgtattgccacctatggttctgtatgtatcattactcttattttat 29977876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 7 - 72
Target Start/End: Original strand, 8343198 - 8343263
Alignment:
Q  7 tgtcagatttttgtgtggatgtcaaagggtgtattgccatctaagggtgtctatgtatcataactc 72  Q
    |||||||||||| ||| | ||||||||| |||||||||| |||||| ||| |||||||||||||||    
T  8343198 tgtcagatttttatgtaggtgtcaaaggatgtattgccacctaaggatgtttatgtatcataactc 8343263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 4 - 76
Target Start/End: Complemental strand, 47104612 - 47104540
Alignment:
Q  4 acgtgtcagatttttgtgtggatgtcaaagggtgtattgccatctaagggtgtctatgtatcataactcttat 76  Q
    |||||||| |||||||||||| ||||| || |||||||| ||||||||  ||||||| |||||| ||||||||    
T  47104612 acgtgtcaaatttttgtgtgggtgtcagagagtgtattgtcatctaagaatgtctatatatcattactcttat 47104540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 7 - 54
Target Start/End: Original strand, 17983778 - 17983825
Alignment:
Q  7 tgtcagatttttgtgtggatgtcaaagggtgtattgccatctaagggt 54  Q
    |||||||||||||||||| |||||| ||||||||||||| ||||||||    
T  17983778 tgtcagatttttgtgtgggtgtcaaggggtgtattgccacctaagggt 17983825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 1 - 68
Target Start/End: Original strand, 53352595 - 53352661
Alignment:
Q  1 actacgtgtcagatttttgtgtggatgtcaaagggtgtattgccatctaagggtgtctatgtatcata 68  Q
    |||||||||||||||||||||| | ||| ||||  ||||||| || ||||||||||||||||||||||    
T  53352595 actacgtgtcagatttttgtgtaggtgttaaagaatgtattg-cacctaagggtgtctatgtatcata 53352661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 9 - 64
Target Start/End: Original strand, 29589777 - 29589831
Alignment:
Q  9 tcagatttttgtgtggatgtcaaagggtgtattgccatctaagggtgtctatgtat 64  Q
    |||||||||||||||| |||||| |||||||||| || |||||||||| |||||||    
T  29589777 tcagatttttgtgtgggtgtcaaggggtgtattg-caactaagggtgtttatgtat 29589831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 1 - 73
Target Start/End: Original strand, 28480297 - 28480369
Alignment:
Q  1 actacgtgtcagatttttgtgtggatgtcaaagggtgtattgccatctaagggtgtctatgtatcataactct 73  Q
    ||||| |||||||||||||||||  ||| ||   |||||||| || |||||| ||||||||||| ||||||||    
T  28480297 actacatgtcagatttttgtgtgagtgttaagaagtgtattgtcacctaaggttgtctatgtattataactct 28480369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 1 - 73
Target Start/End: Original strand, 28481172 - 28481244
Alignment:
Q  1 actacgtgtcagatttttgtgtggatgtcaaagggtgtattgccatctaagggtgtctatgtatcataactct 73  Q
    ||||| |||||||||||||||||  ||| ||   |||||||| || |||||| ||||||||||| ||||||||    
T  28481172 actacatgtcagatttttgtgtgagtgttaagaagtgtattgtcacctaaggttgtctatgtattataactct 28481244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 1 - 73
Target Start/End: Original strand, 28482047 - 28482119
Alignment:
Q  1 actacgtgtcagatttttgtgtggatgtcaaagggtgtattgccatctaagggtgtctatgtatcataactct 73  Q
    ||||| |||||||||||||||||  ||| ||   |||||||| || |||||| ||||||||||| ||||||||    
T  28482047 actacatgtcagatttttgtgtgagtgttaagaagtgtattgtcacctaaggttgtctatgtattataactct 28482119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 62; Significance: 1e-26; HSPs: 31)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 1 - 74
Target Start/End: Complemental strand, 2581986 - 2581913
Alignment:
Q  1 actacgtgtcagatttttgtgtggatgtcaaagggtgtattgccatctaagggtgtctatgtatcataactctt 74  Q
    |||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||| ||||||    
T  2581986 actacgtgtcagatttttgtgtgggtgtcaaagggtgtattgccacctaagggtgtctatgtatcattactctt 2581913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 1 - 72
Target Start/End: Original strand, 9474905 - 9474976
Alignment:
Q  1 actacgtgtcagatttttgtgtggatgtcaaagggtgtattgccatctaagggtgtctatgtatcataactc 72  Q
    |||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||| ||||    
T  9474905 actacgtgtcagatttttgtgtgggtgtcaaagggtgtattgccacctaagggtgtctatgtatcattactc 9474976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 1 - 72
Target Start/End: Original strand, 48716311 - 48716382
Alignment:
Q  1 actacgtgtcagatttttgtgtggatgtcaaagggtgtattgccatctaagggtgtctatgtatcataactc 72  Q
    |||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||| ||||    
T  48716311 actacgtgtcagatttttgtgtggatgtcaaatggtgtattgccacctaagggtgtctatgtatcattactc 48716382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 1 - 74
Target Start/End: Original strand, 38632350 - 38632423
Alignment:
Q  1 actacgtgtcagatttttgtgtggatgtcaaagggtgtattgccatctaagggtgtctatgtatcataactctt 74  Q
    |||||||||||||||||||||||||||| ||| |||||||||||| ||||||||||||||||||||| ||||||    
T  38632350 actacgtgtcagatttttgtgtggatgttaaaaggtgtattgccacctaagggtgtctatgtatcattactctt 38632423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 1 - 73
Target Start/End: Complemental strand, 41758876 - 41758804
Alignment:
Q  1 actacgtgtcagatttttgtgtggatgtcaaagggtgtattgccatctaagggtgtctatgtatcataactct 73  Q
    |||||||||||||||||||||||| ||||||||||||||||||||| ||| |||||||||||||||| |||||    
T  41758876 actacgtgtcagatttttgtgtggttgtcaaagggtgtattgccatttaatggtgtctatgtatcattactct 41758804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 1 - 72
Target Start/End: Complemental strand, 3000390 - 3000319
Alignment:
Q  1 actacgtgtcagatttttgtgtggatgtcaaagggtgtattgccatctaagggtgtctatgtatcataactc 72  Q
    |||||||||||||||||||||||| |||||||||||||||||||| |||||||||| |||||||||| ||||    
T  3000390 actacgtgtcagatttttgtgtgggtgtcaaagggtgtattgccacctaagggtgtttatgtatcattactc 3000319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 4 - 74
Target Start/End: Complemental strand, 32813315 - 32813245
Alignment:
Q  4 acgtgtcagatttttgtgtggatgtcaaagggtgtattgccatctaagggtgtctatgtatcataactctt 74  Q
    ||||||||||||||||||||| ||| |||||||||||||||| |||||| |||||||||||||||||||||    
T  32813315 acgtgtcagatttttgtgtgggtgttaaagggtgtattgccacctaaggatgtctatgtatcataactctt 32813245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 2 - 76
Target Start/End: Original strand, 49811557 - 49811631
Alignment:
Q  2 ctacgtgtcagatttttgtgtggatgtcaaagggtgtattgccatctaagggtgtctatgtatcataactcttat 76  Q
    ||||||||||||||||||||||||||||||| ||||||||| || |||||| ||||||| |||||||||||||||    
T  49811557 ctacgtgtcagatttttgtgtggatgtcaaatggtgtattgtcacctaaggatgtctatctatcataactcttat 49811631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 1 - 74
Target Start/End: Complemental strand, 38595225 - 38595152
Alignment:
Q  1 actacgtgtcagatttttgtgtggatgtcaaagggtgtattgccatctaagggtgtctatgtatcataactctt 74  Q
    |||||||||||||||||||||||| |||||||||||||||||||| |||| ||||| |||||||||| ||||||    
T  38595225 actacgtgtcagatttttgtgtgggtgtcaaagggtgtattgccacctaaaggtgtttatgtatcattactctt 38595152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 1 - 73
Target Start/End: Original strand, 51898712 - 51898784
Alignment:
Q  1 actacgtgtcagatttttgtgtggatgtcaaagggtgtattgccatctaagggtgtctatgtatcataactct 73  Q
    |||||||||||||||||||||||| |||||||||||||||||||| |||| | |||||||||||||| |||||    
T  51898712 actacgtgtcagatttttgtgtgggtgtcaaagggtgtattgccacctaaagatgtctatgtatcattactct 51898784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 1 - 72
Target Start/End: Original strand, 47452349 - 47452420
Alignment:
Q  1 actacgtgtcagatttttgtgtggatgtcaaagggtgtattgccatctaagggtgtctatgtatcataactc 72  Q
    ||||||||| |||||||||||||| |||||||||||||||| ||| ||||||||||||||||||||| ||||    
T  47452349 actacgtgttagatttttgtgtgggtgtcaaagggtgtattaccacctaagggtgtctatgtatcattactc 47452420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 1 - 74
Target Start/End: Original strand, 8346417 - 8346490
Alignment:
Q  1 actacgtgtcagatttttgtgtggatgtcaaagggtgtattgccatctaagggtgtctatgtatcataactctt 74  Q
    |||||||||||||||||||||||| ||||||| |||||||||||| |||| |||| ||||||||||| ||||||    
T  8346417 actacgtgtcagatttttgtgtgggtgtcaaatggtgtattgccacctaaaggtgactatgtatcattactctt 8346490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 3 - 72
Target Start/End: Original strand, 27564766 - 27564835
Alignment:
Q  3 tacgtgtcagatttttgtgtggatgtcaaagggtgtattgccatctaagggtgtctatgtatcataactc 72  Q
    |||||||||||||||||||||| ||||||| |||||||||||| |||||| |||||||||||||| ||||    
T  27564766 tacgtgtcagatttttgtgtgggtgtcaaaaggtgtattgccacctaaggatgtctatgtatcattactc 27564835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 7 - 72
Target Start/End: Original strand, 50591035 - 50591100
Alignment:
Q  7 tgtcagatttttgtgtggatgtcaaagggtgtattgccatctaagggtgtctatgtatcataactc 72  Q
    |||||||||||||||||| |||||| ||||||||||||| |||||||||| |||||||||||||||    
T  50591035 tgtcagatttttgtgtgggtgtcaaggggtgtattgccacctaagggtgtttatgtatcataactc 50591100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 1 - 67
Target Start/End: Original strand, 11152407 - 11152472
Alignment:
Q  1 actacgtgtcagatttttgtgtggatgtcaaagggtgtattgccatctaagggtgtctatgtatcat 67  Q
    ||||||||||||||||||||||||||||| ||||||||||||||| |||| ||||||||||| ||||    
T  11152407 actacgtgtcagatttttgtgtggatgtcgaagggtgtattgccacctaa-ggtgtctatgtttcat 11152472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 4 - 72
Target Start/End: Complemental strand, 26440802 - 26440734
Alignment:
Q  4 acgtgtcagatttttgtgtggatgtcaaagggtgtattgccatctaagggtgtctatgtatcataactc 72  Q
    ||||||||||||||||||||| ||| ||||||||||||| ||||||||| ||||||| |||| ||||||    
T  26440802 acgtgtcagatttttgtgtgggtgttaaagggtgtattgtcatctaaggatgtctatctatcctaactc 26440734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 4 - 72
Target Start/End: Complemental strand, 37649266 - 37649198
Alignment:
Q  4 acgtgtcagatttttgtgtggatgtcaaagggtgtattgccatctaagggtgtctatgtatcataactc 72  Q
    ||||||||||||||||||||| |||||||| ||||||||||| |||| | |||||||||||||| ||||    
T  37649266 acgtgtcagatttttgtgtgggtgtcaaagagtgtattgccacctaaagatgtctatgtatcattactc 37649198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 1 - 73
Target Start/End: Complemental strand, 50630529 - 50630457
Alignment:
Q  1 actacgtgtcagatttttgtgtggatgtcaaagggtgtattgccatctaagggtgtctatgtatcataactct 73  Q
    |||||||||||||||||||||||| |  |||||| |||||||||| |||||||| |||||||||||| |||||    
T  50630529 actacgtgtcagatttttgtgtgggtaacaaaggatgtattgccacctaagggtatctatgtatcattactct 50630457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 7 - 74
Target Start/End: Original strand, 5959035 - 5959102
Alignment:
Q  7 tgtcagatttttgtgtggatgtcaaagggtgtattgccatctaagggtgtctatgtatcataactctt 74  Q
    |||||||||||||||||| ||||||  ||||||||||||  ||||||||| |||||||||||||||||    
T  5959035 tgtcagatttttgtgtgggtgtcaagaggtgtattgccacttaagggtgtttatgtatcataactctt 5959102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 1 - 76
Target Start/End: Complemental strand, 26274503 - 26274428
Alignment:
Q  1 actacgtgtcagatttttgtgtggatgtcaaagggtgtattgccatctaagggtgtctatgtatcataactcttat 76  Q
    |||| ||||||||||||| ||||||||||||| | ||||||||||  |||||||||||||||||||| | ||||||    
T  26274503 actatgtgtcagatttttctgtggatgtcaaatgatgtattgccacataagggtgtctatgtatcattattcttat 26274428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 1 - 67
Target Start/End: Original strand, 44548405 - 44548471
Alignment:
Q  1 actacgtgtcagatttttgtgtggatgtcaaagggtgtattgccatctaagggtgtctatgtatcat 67  Q
    |||||||||||||||||||||||| | ||||| |||||||||||| |||| | ||||||||||||||    
T  44548405 actacgtgtcagatttttgtgtgggtatcaaatggtgtattgccacctaaagatgtctatgtatcat 44548471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 7 - 72
Target Start/End: Original strand, 41608528 - 41608593
Alignment:
Q  7 tgtcagatttttgtgtggatgtcaaagggtgtattgccatctaagggtgtctatgtatcataactc 72  Q
    |||||||||||||||||  |||||| ||||||||||||| |||||| ||| |||||||||||||||    
T  41608528 tgtcagatttttgtgtgagtgtcaaggggtgtattgccacctaaggatgtttatgtatcataactc 41608593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 1 - 72
Target Start/End: Complemental strand, 43203 - 43132
Alignment:
Q  1 actacgtgtcagatttttgtgtggatgtcaaagggtgtattgccatctaagggtgtctatgtatcataactc 72  Q
    |||||||||||||||||||||||| ||||||||| ||||||| |  |||||  |||||||||||||| ||||    
T  43203 actacgtgtcagatttttgtgtgggtgtcaaaggatgtattgtctcctaagactgtctatgtatcattactc 43132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 4 - 74
Target Start/End: Original strand, 23597123 - 23597193
Alignment:
Q  4 acgtgtcagatttttgtgtggatgtcaaagggtgtattgccatctaagggtgtctatgtatcataactctt 74  Q
    ||||||||||||||| ||||| | |||||| ||||||||||| |||| | |||||||||||||| ||||||    
T  23597123 acgtgtcagatttttatgtgggtatcaaagagtgtattgccacctaatgatgtctatgtatcattactctt 23597193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 2 - 75
Target Start/End: Original strand, 45044590 - 45044663
Alignment:
Q  2 ctacgtgtcagatttttgtgtggatgtcaaagggtgtattgccatctaagggtgtctatgtatcataactctta 75  Q
    |||| |||||||||||||| ||| ||||||| |||||||||||| ||||||   | ||||||||||||||||||    
T  45044590 ctacatgtcagatttttgtatgggtgtcaaatggtgtattgccacctaaggaaatgtatgtatcataactctta 45044663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 13414832 - 13414791
Alignment:
Q  1 actacgtgtcagatttttgtgtggatgtcaaagggtgtattg 42  Q
    ||||||||| |||||||||||||| |||||||||||||||||    
T  13414832 actacgtgttagatttttgtgtgggtgtcaaagggtgtattg 13414791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 4 - 73
Target Start/End: Original strand, 37926470 - 37926539
Alignment:
Q  4 acgtgtcagatttttgtgtggatgtcaaagggtgtattgccatctaagggtgtctatgtatcataactct 73  Q
    ||||||||||||||| ||||| ||| ||| | |||||||||| |||| | | ||||||||||||||||||    
T  37926470 acgtgtcagatttttatgtgggtgttaaaagatgtattgccacctaaagatatctatgtatcataactct 37926539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 7 - 72
Target Start/End: Complemental strand, 47748507 - 47748443
Alignment:
Q  7 tgtcagatttttgtgtggatgtcaaagggtgtattgccatctaagggtgtctatgtatcataactc 72  Q
    |||||||||||| | ||| |||||| ||||||||||||| |||||||| | |||||||||||||||    
T  47748507 tgtcagatttttatatgggtgtcaa-gggtgtattgccacctaagggtatttatgtatcataactc 47748443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 7 - 71
Target Start/End: Complemental strand, 44454044 - 44453980
Alignment:
Q  7 tgtcagatttttgtgtggatgtcaaagggtgtattgccatctaagggtgtctatgtatcataact 71  Q
    |||||||||||||||||| | ||||  | ||||||||||  ||| ||||||||||||||||||||    
T  44454044 tgtcagatttttgtgtgggtatcaagagatgtattgccacttaaaggtgtctatgtatcataact 44453980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 4 - 68
Target Start/End: Original strand, 34340071 - 34340134
Alignment:
Q  4 acgtgtcagatttttgtgtggatgtcaaagggtgtattgccatctaagggtgtctatgtatcata 68  Q
    |||||||||||||||||||||   ||||  |||||||| ||| ||||| ||||||||||||||||    
T  34340071 acgtgtcagatttttgtgtggca-tcaacaggtgtattaccacctaagagtgtctatgtatcata 34340134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 44334199 - 44334239
Alignment:
Q  1 actacgtgtcagatttttgtgtggatgtcaaagggtgtatt 41  Q
    |||||||||||| |||||||||||||||||| | |||||||    
T  44334199 actacgtgtcaggtttttgtgtggatgtcaatgtgtgtatt 44334239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 60; Significance: 2e-25; HSPs: 31)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 1 - 72
Target Start/End: Original strand, 40423972 - 40424043
Alignment:
Q  1 actacgtgtcagatttttgtgtggatgtcaaagggtgtattgccatctaagggtgtctatgtatcataactc 72  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||| ||||    
T  40423972 actacgtgtcagatttttgtgtggatgtcaaagggtgtattgccacctaagggtatctatgtatcattactc 40424043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 1 - 72
Target Start/End: Original strand, 504150 - 504221
Alignment:
Q  1 actacgtgtcagatttttgtgtggatgtcaaagggtgtattgccatctaagggtgtctatgtatcataactc 72  Q
    |||||||||||||||||||||||| ||||||| |||||||||||| ||||||||||||||||||||| ||||    
T  504150 actacgtgtcagatttttgtgtgggtgtcaaaaggtgtattgccacctaagggtgtctatgtatcattactc 504221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 1 - 72
Target Start/End: Original strand, 1179969 - 1180040
Alignment:
Q  1 actacgtgtcagatttttgtgtggatgtcaaagggtgtattgccatctaagggtgtctatgtatcataactc 72  Q
    |||||||||||||||||||||||| |||||||||||||||| ||| ||||||||||||||||||||| ||||    
T  1179969 actacgtgtcagatttttgtgtgggtgtcaaagggtgtattaccacctaagggtgtctatgtatcattactc 1180040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 1 - 72
Target Start/End: Complemental strand, 12831118 - 12831047
Alignment:
Q  1 actacgtgtcagatttttgtgtggatgtcaaagggtgtattgccatctaagggtgtctatgtatcataactc 72  Q
    |||||||||||||||||||||||| ||||||||||||||||| || ||||||||||||||||||||| ||||    
T  12831118 actacgtgtcagatttttgtgtgggtgtcaaagggtgtattgtcacctaagggtgtctatgtatcattactc 12831047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 1 - 76
Target Start/End: Complemental strand, 14547993 - 14547918
Alignment:
Q  1 actacgtgtcagatttttgtgtggatgtcaaagggtgtattgccatctaagggtgtctatgtatcataactcttat 76  Q
    |||||||||||||||||||||||| ||||||| |||||||||||| ||||||||||||||||||| | ||||||||    
T  14547993 actacgtgtcagatttttgtgtgggtgtcaaatggtgtattgccacctaagggtgtctatgtatctttactcttat 14547918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 1 - 72
Target Start/End: Complemental strand, 15197404 - 15197333
Alignment:
Q  1 actacgtgtcagatttttgtgtggatgtcaaagggtgtattgccatctaagggtgtctatgtatcataactc 72  Q
    |||||||||||||||||||||||| |||||||||||||||||||| ||||| ||||||||||||||| ||||    
T  15197404 actacgtgtcagatttttgtgtgggtgtcaaagggtgtattgccacctaagagtgtctatgtatcattactc 15197333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 2 - 72
Target Start/End: Original strand, 15048212 - 15048281
Alignment:
Q  2 ctacgtgtcagatttttgtgtggatgtcaaagggtgtattgccatctaagggtgtctatgtatcataactc 72  Q
    ||||||||||||||||||||||| |||||||||||||||||||| |||||| |||||||||||||||||||    
T  15048212 ctacgtgtcagatttttgtgtgg-tgtcaaagggtgtattgccacctaaggatgtctatgtatcataactc 15048281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 7 - 72
Target Start/End: Original strand, 30479509 - 30479574
Alignment:
Q  7 tgtcagatttttgtgtggatgtcaaagggtgtattgccatctaagggtgtctatgtatcataactc 72  Q
    |||||||||||| |||||||||||||||||||||||||| |||||||||| |||||||||||||||    
T  30479509 tgtcagatttttatgtggatgtcaaagggtgtattgccacctaagggtgtttatgtatcataactc 30479574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 2 - 70
Target Start/End: Original strand, 10621117 - 10621185
Alignment:
Q  2 ctacgtgtcagatttttgtgtggatgtcaaagggtgtattgccatctaagggtgtctatgtatcataac 70  Q
    ||||||||||||||||||||||| |||||||||||||||| ||| |||||| |||||||||||||||||    
T  10621117 ctacgtgtcagatttttgtgtgggtgtcaaagggtgtattaccacctaaggatgtctatgtatcataac 10621185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 1 - 73
Target Start/End: Complemental strand, 37038550 - 37038478
Alignment:
Q  1 actacgtgtcagatttttgtgtggatgtcaaagggtgtattgccatctaagggtgtctatgtatcataactct 73  Q
    |||||||||||||||||||||||| |||||||||||||||||||| |||| | |||||||||||||| |||||    
T  37038550 actacgtgtcagatttttgtgtgggtgtcaaagggtgtattgccacctaaagatgtctatgtatcattactct 37038478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 4 - 72
Target Start/End: Original strand, 43414613 - 43414681
Alignment:
Q  4 acgtgtcagatttttgtgtggatgtcaaagggtgtattgccatctaagggtgtctatgtatcataactc 72  Q
    |||||| |||||||||||||| ||||||||||||| ||||||||||||| |||||||||||||||||||    
T  43414613 acgtgttagatttttgtgtgggtgtcaaagggtgtgttgccatctaaggatgtctatgtatcataactc 43414681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 7 - 74
Target Start/End: Complemental strand, 16383442 - 16383375
Alignment:
Q  7 tgtcagatttttgtgtggatgtcaaagggtgtattgccatctaagggtgtctatgtatcataactctt 74  Q
    |||||||||||||||||| |||||| ||||||||||||| |||||||||| |||||||||||||||||    
T  16383442 tgtcagatttttgtgtgggtgtcaaggggtgtattgccacctaagggtgtttatgtatcataactctt 16383375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 1 - 72
Target Start/End: Original strand, 23122626 - 23122697
Alignment:
Q  1 actacgtgtcagatttttgtgtggatgtcaaagggtgtattgccatctaagggtgtctatgtatcataactc 72  Q
    |||||||||||||||||||||||| ||||||| ||||||||||||  |||||||||||||||||||| ||||    
T  23122626 actacgtgtcagatttttgtgtgggtgtcaaaaggtgtattgccacttaagggtgtctatgtatcattactc 23122697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 1 - 72
Target Start/End: Original strand, 34012325 - 34012396
Alignment:
Q  1 actacgtgtcagatttttgtgtggatgtcaaagggtgtattgccatctaagggtgtctatgtatcataactc 72  Q
    ||||||||||| |||||||||||| |||||||||||||||| ||| ||||||||||||||||||||| ||||    
T  34012325 actacgtgtcaaatttttgtgtgggtgtcaaagggtgtattaccacctaagggtgtctatgtatcattactc 34012396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 7 - 74
Target Start/End: Complemental strand, 34307281 - 34307214
Alignment:
Q  7 tgtcagatttttgtgtggatgtcaaagggtgtattgccatctaagggtgtctatgtatcataactctt 74  Q
    |||||||||||||||||| |||||| ||||||||||||| |||||||||| |||||||||||||||||    
T  34307281 tgtcagatttttgtgtgggtgtcaaggggtgtattgccacctaagggtgtttatgtatcataactctt 34307214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 1 - 67
Target Start/End: Complemental strand, 5957901 - 5957835
Alignment:
Q  1 actacgtgtcagatttttgtgtggatgtcaaagggtgtattgccatctaagggtgtctatgtatcat 67  Q
    |||||||||||||||||||||||| |||||||||||||||||||| |||||  ||||||||||||||    
T  5957901 actacgtgtcagatttttgtgtgggtgtcaaagggtgtattgccacctaagaatgtctatgtatcat 5957835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 1 - 74
Target Start/End: Original strand, 10284660 - 10284733
Alignment:
Q  1 actacgtgtcagatttttgtgtggatgtcaaagggtgtattgccatctaagggtgtctatgtatcataactctt 74  Q
    ||||||||||| |||||||||||| |||||||| |||||||| ||  |||||||||||||||||||||||||||    
T  10284660 actacgtgtcaaatttttgtgtgggtgtcaaagagtgtattgtcacttaagggtgtctatgtatcataactctt 10284733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 1 - 73
Target Start/End: Original strand, 44507116 - 44507188
Alignment:
Q  1 actacgtgtcagatttttgtgtggatgtcaaagggtgtattgccatctaagggtgtctatgtatcataactct 73  Q
    |||||||||||||||||||||||| ||| |||| ||||||| ||| ||||||||||||||||||||| |||||    
T  44507116 actacgtgtcagatttttgtgtgggtgttaaagagtgtattaccacctaagggtgtctatgtatcattactct 44507188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 9 - 75
Target Start/End: Original strand, 24307830 - 24307896
Alignment:
Q  9 tcagatttttgtgtggatgtcaaagggtgtattgccatctaagggtgtctatgtatcataactctta 75  Q
    |||||||||||||||| |||||| || |||||||||| |||||||||| ||||||||||||||||||    
T  24307830 tcagatttttgtgtgggtgtcaagggatgtattgccacctaagggtgtttatgtatcataactctta 24307896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 7 - 73
Target Start/End: Complemental strand, 32032789 - 32032724
Alignment:
Q  7 tgtcagatttttgtgtggatgtcaaagggtgtattgccatctaagggtgtctatgtatcataactct 73  Q
    ||||||||||||||||||||||||| || |||||||||| |||||||||| ||||||||||||||||    
T  32032789 tgtcagatttttgtgtggatgtcaa-ggatgtattgccacctaagggtgtttatgtatcataactct 32032724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 9 - 74
Target Start/End: Complemental strand, 24307692 - 24307627
Alignment:
Q  9 tcagatttttgtgtggatgtcaaagggtgtattgccatctaagggtgtctatgtatcataactctt 74  Q
    |||||||||||||||| |||||| || |||||||||| |||||||||| |||||||||||||||||    
T  24307692 tcagatttttgtgtgggtgtcaatggatgtattgccacctaagggtgtttatgtatcataactctt 24307627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 7 - 75
Target Start/End: Original strand, 15258964 - 15259032
Alignment:
Q  7 tgtcagatttttgtgtggatgtcaaagggtgtattgccatctaagggtgtctatgtatcataactctta 75  Q
    |||||||||||| |||||||||| | || |||||||||||||||| || ||||||||||||||||||||    
T  15258964 tgtcagatttttatgtggatgtccagggatgtattgccatctaagagtatctatgtatcataactctta 15259032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 1 - 72
Target Start/End: Original strand, 14055621 - 14055692
Alignment:
Q  1 actacgtgtcagatttttgtgtggatgtcaaagggtgtattgccatctaagggtgtctatgtatcataactc 72  Q
    ||||| ||| ||||||||||||||||||||| | |||||||| || ||||||||||| ||||||||||||||    
T  14055621 actacatgtaagatttttgtgtggatgtcaaggagtgtattgtcacctaagggtgtcaatgtatcataactc 14055692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 4 - 72
Target Start/End: Original strand, 20074966 - 20075034
Alignment:
Q  4 acgtgtcagatttttgtgtggatgtcaaagggtgtattgccatctaagggtgtctatgtatcataactc 72  Q
    |||||||| |||||| ||||| |||||||| ||||||||||| |||||| |||||||||||||| ||||    
T  20074966 acgtgtcacatttttatgtgggtgtcaaagagtgtattgccacctaaggatgtctatgtatcattactc 20075034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 9 - 75
Target Start/End: Original strand, 4854900 - 4854966
Alignment:
Q  9 tcagatttttgtgtggatgtcaaagggtgtattgccatctaagggtgtctatgtatcataactctta 75  Q
    |||||||||| ||| | ||| |||||||||||||||| |||||| |||||||||||||| |||||||    
T  4854900 tcagatttttatgtaggtgttaaagggtgtattgccacctaaggatgtctatgtatcattactctta 4854966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 1 - 53
Target Start/End: Original strand, 8841461 - 8841513
Alignment:
Q  1 actacgtgtcagatttttgtgtggatgtcaaagggtgtattgccatctaaggg 53  Q
    ||||||||| |||||||||||||| |||||||||||||| ||||| |||||||    
T  8841461 actacgtgttagatttttgtgtgggtgtcaaagggtgtactgccacctaaggg 8841513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 7 - 74
Target Start/End: Original strand, 16056436 - 16056503
Alignment:
Q  7 tgtcagatttttgtgtggatgtcaaagggtgtattgccatctaagggtgtctatgtatcataactctt 74  Q
    |||||||||||||||||| |||||| || ||||||| ||  ||||| ||| |||||||||||||||||    
T  16056436 tgtcagatttttgtgtgggtgtcaagggatgtattgtcacataaggatgtttatgtatcataactctt 16056503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #28
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 1 - 73
Target Start/End: Complemental strand, 17443896 - 17443824
Alignment:
Q  1 actacgtgtcagatttttgtgtggatgtcaaagggtgtattgccatctaagggtgtctatgtatcataactct 73  Q
    ||||| |||||||||||||||||  ||| ||   |||||||| || |||||| ||||||||||||||||||||    
T  17443896 actacatgtcagatttttgtgtgagtgttaagaagtgtattgtcacctaaggttgtctatgtatcataactct 17443824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #29
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 17 - 73
Target Start/End: Complemental strand, 25838252 - 25838196
Alignment:
Q  17 ttgtgtggatgtcaaagggtgtattgccatctaagggtgtctatgtatcataactct 73  Q
    ||||||||||||||||  ||||||||||| |||||| | ||||| ||||||||||||    
T  25838252 ttgtgtggatgtcaaaaagtgtattgccacctaaggatatctatttatcataactct 25838196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #30
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 3 - 74
Target Start/End: Complemental strand, 42221584 - 42221513
Alignment:
Q  3 tacgtgtcagatttttgtgtggatgtcaaagggtgtattgccatctaagggtgtctatgtatcataactctt 74  Q
    |||||||||||||||||||||| |||| | |  ||||||| || |||||| ||| |||||||||| ||||||    
T  42221584 tacgtgtcagatttttgtgtgggtgtccaggaatgtattgtcacctaaggatgtatatgtatcattactctt 42221513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #31
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 33 - 67
Target Start/End: Complemental strand, 9122234 - 9122200
Alignment:
Q  33 gggtgtattgccatctaagggtgtctatgtatcat 67  Q
    ||||||||||||| |||||||||||||||||||||    
T  9122234 gggtgtattgccacctaagggtgtctatgtatcat 9122200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 60; Significance: 2e-25; HSPs: 27)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 1 - 72
Target Start/End: Complemental strand, 40145478 - 40145407
Alignment:
Q  1 actacgtgtcagatttttgtgtggatgtcaaagggtgtattgccatctaagggtgtctatgtatcataactc 72  Q
    |||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||| ||||    
T  40145478 actacgtgtcagatttttgtgtggatgttaaagggtgtattgccacctaagggtgtctatgtatcattactc 40145407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 1 - 67
Target Start/End: Original strand, 18520913 - 18520979
Alignment:
Q  1 actacgtgtcagatttttgtgtggatgtcaaagggtgtattgccatctaagggtgtctatgtatcat 67  Q
    |||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||    
T  18520913 actacgtgtcagatttttgtgtgggtgtcaaagggtgtattgccacctaagggtgtctatgtatcat 18520979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 1 - 73
Target Start/End: Complemental strand, 2740345 - 2740273
Alignment:
Q  1 actacgtgtcagatttttgtgtggatgtcaaagggtgtattgccatctaagggtgtctatgtatcataactct 73  Q
    |||||||||||||||||||||||| |||||||||||||||||||| |||||| |||||||||||||| |||||    
T  2740345 actacgtgtcagatttttgtgtgggtgtcaaagggtgtattgccacctaaggatgtctatgtatcattactct 2740273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 4 - 72
Target Start/End: Complemental strand, 28177843 - 28177775
Alignment:
Q  4 acgtgtcagatttttgtgtggatgtcaaagggtgtattgccatctaagggtgtctatgtatcataactc 72  Q
    ||||||||||||||||||||| |||||||||||||||||||| |||||| |||||||||||||||||||    
T  28177843 acgtgtcagatttttgtgtgggtgtcaaagggtgtattgccacctaaggatgtctatgtatcataactc 28177775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 1 - 72
Target Start/End: Complemental strand, 35785270 - 35785199
Alignment:
Q  1 actacgtgtcagatttttgtgtggatgtcaaagggtgtattgccatctaagggtgtctatgtatcataactc 72  Q
    |||||||||||||||||||||||| ||||||| |||||||||||| ||||||||||||||||||||| ||||    
T  35785270 actacgtgtcagatttttgtgtgggtgtcaaaaggtgtattgccacctaagggtgtctatgtatcattactc 35785199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 1 - 72
Target Start/End: Original strand, 35943921 - 35943992
Alignment:
Q  1 actacgtgtcagatttttgtgtggatgtcaaagggtgtattgccatctaagggtgtctatgtatcataactc 72  Q
    |||||||||||||||||||||||| ||||||| | |||||||||| ||||||||||||||||||||||||||    
T  35943921 actacgtgtcagatttttgtgtgggtgtcaaatgatgtattgccacctaagggtgtctatgtatcataactc 35943992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 1 - 74
Target Start/End: Original strand, 36732971 - 36733044
Alignment:
Q  1 actacgtgtcagatttttgtgtggatgtcaaagggtgtattgccatctaagggtgtctatgtatcataactctt 74  Q
    |||| ||||||||||||||||||| |||||||||||||||||| | ||||||||||||||||||||| ||||||    
T  36732971 actatgtgtcagatttttgtgtgggtgtcaaagggtgtattgctacctaagggtgtctatgtatcattactctt 36733044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 7 - 74
Target Start/End: Original strand, 3921300 - 3921367
Alignment:
Q  7 tgtcagatttttgtgtggatgtcaaagggtgtattgccatctaagggtgtctatgtatcataactctt 74  Q
    |||||||||||||||||| |||||| ||||||||||||| |||||||||| |||||||||||||||||    
T  3921300 tgtcagatttttgtgtgggtgtcaaggggtgtattgccacctaagggtgtttatgtatcataactctt 3921367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 1 - 72
Target Start/End: Complemental strand, 14831885 - 14831814
Alignment:
Q  1 actacgtgtcagatttttgtgtggatgtcaaagggtgtattgccatctaagggtgtctatgtatcataactc 72  Q
    |||||||||||||||||| ||||| |||||||||||||||||||| ||||| ||||||||||||||| ||||    
T  14831885 actacgtgtcagatttttatgtgggtgtcaaagggtgtattgccacctaagagtgtctatgtatcattactc 14831814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 1 - 72
Target Start/End: Original strand, 33149667 - 33149738
Alignment:
Q  1 actacgtgtcagatttttgtgtggatgtcaaagggtgtattgccatctaagggtgtctatgtatcataactc 72  Q
    ||||||||||| |||||||||||| |||||||||||||||| ||| ||||||||||||||||||||| ||||    
T  33149667 actacgtgtcaaatttttgtgtgggtgtcaaagggtgtattaccacctaagggtgtctatgtatcattactc 33149738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 1 - 72
Target Start/End: Original strand, 42414331 - 42414402
Alignment:
Q  1 actacgtgtcagatttttgtgtggatgtcaaagggtgtattgccatctaagggtgtctatgtatcataactc 72  Q
    |||||||||||||||||||||||| |||||||||||||||||||| |||  |||||||||||||||| ||||    
T  42414331 actacgtgtcagatttttgtgtgggtgtcaaagggtgtattgccacctactggtgtctatgtatcattactc 42414402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 4 - 73
Target Start/End: Complemental strand, 6679766 - 6679697
Alignment:
Q  4 acgtgtcagatttttgtgtggatgtcaaagggtgtattgccatctaagggtgtctatgtatcataactct 73  Q
    ||||||||||||||||||||| ||||||| |||||||||||| |||| | ||||||||||||||||||||    
T  6679766 acgtgtcagatttttgtgtgggtgtcaaaaggtgtattgccacctaaagatgtctatgtatcataactct 6679697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 1 - 74
Target Start/End: Complemental strand, 13811723 - 13811650
Alignment:
Q  1 actacgtgtcagatttttgtgtggatgtcaaagggtgtattgccatctaagggtgtctatgtatcataactctt 74  Q
    |||||||||||||||||||||||| ||||||| | |||||||||| ||||||||||||||||||| | ||||||    
T  13811723 actacgtgtcagatttttgtgtgggtgtcaaatgatgtattgccacctaagggtgtctatgtatctttactctt 13811650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 2 - 75
Target Start/End: Original strand, 15409640 - 15409713
Alignment:
Q  2 ctacgtgtcagatttttgtgtggatgtcaaagggtgtattgccatctaagggtgtctatgtatcataactctta 75  Q
    ||||||||||||||||||||||| ||||||||  ||||||| || |||||| ||||||||||||||||||||||    
T  15409640 ctacgtgtcagatttttgtgtgggtgtcaaagaatgtattgtcacctaaggatgtctatgtatcataactctta 15409713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 7 - 73
Target Start/End: Original strand, 2252203 - 2252269
Alignment:
Q  7 tgtcagatttttgtgtggatgtcaaagggtgtattgccatctaagggtgtctatgtatcataactct 73  Q
    |||||||||||||||||| |||||| ||||||||||||| |||||| ||| ||||||||||||||||    
T  2252203 tgtcagatttttgtgtgggtgtcaaggggtgtattgccacctaaggatgtttatgtatcataactct 2252269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 13 - 67
Target Start/End: Original strand, 36875644 - 36875698
Alignment:
Q  13 atttttgtgtggatgtcaaagggtgtattgccatctaagggtgtctatgtatcat 67  Q
    |||||||||||| |||||||||||||||||||| |||||||||||||||||||||    
T  36875644 atttttgtgtgggtgtcaaagggtgtattgccacctaagggtgtctatgtatcat 36875698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 4 - 72
Target Start/End: Complemental strand, 26720584 - 26720516
Alignment:
Q  4 acgtgtcagatttttgtgtggatgtcaaagggtgtattgccatctaagggtgtctatgtatcataactc 72  Q
    ||||||||||||||| ||| | ||| |||||||||||||||| |||||| |||||||||||||||||||    
T  26720584 acgtgtcagatttttttgtaggtgttaaagggtgtattgccacctaaggatgtctatgtatcataactc 26720516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 4 - 72
Target Start/End: Complemental strand, 26990333 - 26990265
Alignment:
Q  4 acgtgtcagatttttgtgtggatgtcaaagggtgtattgccatctaagggtgtctatgtatcataactc 72  Q
    ||||||||||||||| ||| | ||| |||||||||||||||| |||||| |||||||||||||||||||    
T  26990333 acgtgtcagatttttttgtaggtgttaaagggtgtattgccacctaaggatgtctatgtatcataactc 26990265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 9 - 75
Target Start/End: Original strand, 39688934 - 39689000
Alignment:
Q  9 tcagatttttgtgtggatgtcaaagggtgtattgccatctaagggtgtctatgtatcataactctta 75  Q
    |||||||||||||||| |||||| || ||||||||||  ||||||||| ||||||||||||||||||    
T  39688934 tcagatttttgtgtgggtgtcaagggatgtattgccacttaagggtgtttatgtatcataactctta 39689000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 1 - 74
Target Start/End: Complemental strand, 31009059 - 31008986
Alignment:
Q  1 actacgtgtcagatttttgtgtggatgtcaaagggtgtattgccatctaagggtgtctatgtatcataactctt 74  Q
    |||||||||||||||||||||||| |||  |||  ||||||| || |||||| ||| |||||||||||||||||    
T  31009059 actacgtgtcagatttttgtgtgggtgtggaagaatgtattgtcacctaaggatgtttatgtatcataactctt 31008986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 9 - 68
Target Start/End: Complemental strand, 10356698 - 10356638
Alignment:
Q  9 tcagatttttgtgtggatgtcaaaggg-tgtattgccatctaagggtgtctatgtatcata 68  Q
    |||||||||||||||| |||||| ||| |||||||||| |||||| |||||||||||||||    
T  10356698 tcagatttttgtgtgggtgtcaatgggatgtattgccacctaaggatgtctatgtatcata 10356638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 4 - 72
Target Start/End: Original strand, 33825356 - 33825424
Alignment:
Q  4 acgtgtcagatttttgtgtggatgtcaaagggtgtattgccatctaagggtgtctatgtatcataactc 72  Q
    ||||||||||||||| ||||| |||||| | ||||||||||| |||||  |||||||| ||||| ||||    
T  33825356 acgtgtcagatttttatgtgggtgtcaaggagtgtattgccacctaagaatgtctatgcatcattactc 33825424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 1 - 73
Target Start/End: Original strand, 41470445 - 41470517
Alignment:
Q  1 actacgtgtcagatttttgtgtggatgtcaaagggtgtattgccatctaagggtgtctatgtatcataactct 73  Q
    |||||||||||||||||| | || || | ||||| |||||||||| |||| ||||||||||||| || |||||    
T  41470445 actacgtgtcagatttttatatgaattttaaaggatgtattgccacctaaaggtgtctatgtattattactct 41470517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 11 - 72
Target Start/End: Original strand, 20073555 - 20073616
Alignment:
Q  11 agatttttgtgtggatgtcaaagggtgtattgccatctaagggtgtctatgtatcataactc 72  Q
    |||||||| ||||  ||||||||||||||||| ||||||| | ||||||| |||||| ||||    
T  20073555 agatttttatgtgagtgtcaaagggtgtattgtcatctaatgatgtctatatatcattactc 20073616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 4 - 45
Target Start/End: Original strand, 22512430 - 22512470
Alignment:
Q  4 acgtgtcagatttttgtgtggatgtcaaagggtgtattgcca 45  Q
    |||||||||| |||||||||||||| ||||||||||||||||    
T  22512430 acgtgtcagaattttgtgtggatgt-aaagggtgtattgcca 22512470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 4 - 52
Target Start/End: Complemental strand, 16327969 - 16327921
Alignment:
Q  4 acgtgtcagatttttgtgtggatgtcaaagggtgtattgccatctaagg 52  Q
    ||||||||||||||| ||||| |||||| || |||||||||| ||||||    
T  16327969 acgtgtcagatttttatgtgggtgtcaatggatgtattgccacctaagg 16327921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 2 - 74
Target Start/End: Complemental strand, 38296273 - 38296201
Alignment:
Q  2 ctacgtgtcagatttttgtgtggatgtcaaagggtgtattgccatctaagggtgtctatgtatcataactctt 74  Q
    ||||||||| ||||||||||||| | | ||  ||||||||| || |||||   ||||||||||||||||||||    
T  38296273 ctacgtgtctgatttttgtgtgggtattaagaggtgtattgacacctaagatagtctatgtatcataactctt 38296201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 59; Significance: 8e-25; HSPs: 37)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 1 - 75
Target Start/End: Complemental strand, 7389460 - 7389386
Alignment:
Q  1 actacgtgtcagatttttgtgtggatgtcaaagggtgtattgccatctaagggtgtctatgtatcataactctta 75  Q
    |||||||||||||||||||||||| |||||||| ||||||||||| ||||||||||||||||||||| |||||||    
T  7389460 actacgtgtcagatttttgtgtgggtgtcaaagagtgtattgccacctaagggtgtctatgtatcattactctta 7389386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 1 - 73
Target Start/End: Original strand, 36361942 - 36362014
Alignment:
Q  1 actacgtgtcagatttttgtgtggatgtcaaagggtgtattgccatctaagggtgtctatgtatcataactct 73  Q
    |||||||||||||||||||||||| ||||||||| |||||||||| ||||||||||||||||||||| |||||    
T  36361942 actacgtgtcagatttttgtgtgggtgtcaaaggatgtattgccacctaagggtgtctatgtatcattactct 36362014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 2 - 74
Target Start/End: Complemental strand, 38044267 - 38044195
Alignment:
Q  2 ctacgtgtcagatttttgtgtggatgtcaaagggtgtattgccatctaagggtgtctatgtatcataactctt 74  Q
    |||| ||||||||||||||||||||||||| ||||||||||||| |||||||||| |||||||||||||||||    
T  38044267 ctacatgtcagatttttgtgtggatgtcaaggggtgtattgccacctaagggtgtttatgtatcataactctt 38044195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 1 - 72
Target Start/End: Original strand, 4999543 - 4999614
Alignment:
Q  1 actacgtgtcagatttttgtgtggatgtcaaagggtgtattgccatctaagggtgtctatgtatcataactc 72  Q
    ||||||| |||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||| ||||    
T  4999543 actacgtatcagatttttgtgtgggtgtcaaaaggtgtattgccatctaagggtgtctatgtatcattactc 4999614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 1 - 74
Target Start/End: Original strand, 8080412 - 8080485
Alignment:
Q  1 actacgtgtcagatttttgtgtggatgtcaaagggtgtattgccatctaagggtgtctatgtatcataactctt 74  Q
    |||||||||||||||||| ||| | |||||||||||||||||||| ||||||||||||||||||||| ||||||    
T  8080412 actacgtgtcagatttttatgtaggtgtcaaagggtgtattgccacctaagggtgtctatgtatcattactctt 8080485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 1 - 73
Target Start/End: Complemental strand, 3434633 - 3434561
Alignment:
Q  1 actacgtgtcagatttttgtgtggatgtcaaagggtgtattgccatctaagggtgtctatgtatcataactct 73  Q
    |||||||||||| ||||||||||| |||||||||||||||||||| |||||| |||||||||||||| |||||    
T  3434633 actacgtgtcagttttttgtgtgggtgtcaaagggtgtattgccacctaaggatgtctatgtatcattactct 3434561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 1 - 73
Target Start/End: Complemental strand, 36362097 - 36362025
Alignment:
Q  1 actacgtgtcagatttttgtgtggatgtcaaagggtgtattgccatctaagggtgtctatgtatcataactct 73  Q
    |||||||||||||||||||||||| ||||||||| |||||| ||| ||||||||||||||||||||| |||||    
T  36362097 actacgtgtcagatttttgtgtgggtgtcaaaggatgtattaccacctaagggtgtctatgtatcattactct 36362025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 1 - 72
Target Start/End: Complemental strand, 35137604 - 35137533
Alignment:
Q  1 actacgtgtcagatttttgtgtggatgtcaaagggtgtattgccatctaagggtgtctatgtatcataactc 72  Q
    ||||||||| |||||||||||||| |||||||||||||||||||| |||||||||||||| |||||| ||||    
T  35137604 actacgtgttagatttttgtgtgggtgtcaaagggtgtattgccacctaagggtgtctatttatcattactc 35137533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 1 - 72
Target Start/End: Complemental strand, 38267111 - 38267040
Alignment:
Q  1 actacgtgtcagatttttgtgtggatgtcaaagggtgtattgccatctaagggtgtctatgtatcataactc 72  Q
    |||||||||||||||||||||||| ||||||||||||||||| ||  |||||||||||||||||||| ||||    
T  38267111 actacgtgtcagatttttgtgtgggtgtcaaagggtgtattgtcacataagggtgtctatgtatcattactc 38267040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 1 - 67
Target Start/End: Complemental strand, 3784066 - 3784000
Alignment:
Q  1 actacgtgtcagatttttgtgtggatgtcaaagggtgtattgccatctaagggtgtctatgtatcat 67  Q
    |||||||||||||||||||||||| ||||||| | |||||||||| |||||||||||||||||||||    
T  3784066 actacgtgtcagatttttgtgtgggtgtcaaaagatgtattgccacctaagggtgtctatgtatcat 3784000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 7 - 73
Target Start/End: Complemental strand, 22343426 - 22343360
Alignment:
Q  7 tgtcagatttttgtgtggatgtcaaagggtgtattgccatctaagggtgtctatgtatcataactct 73  Q
    |||||||||||||||||| |||||| ||||||||||||| |||||||||| ||||||||||||||||    
T  22343426 tgtcagatttttgtgtgggtgtcaaggggtgtattgccacctaagggtgtttatgtatcataactct 22343360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 3 - 72
Target Start/End: Complemental strand, 19329911 - 19329842
Alignment:
Q  3 tacgtgtcagatttttgtgtggatgtcaaagggtgtattgccatctaagggtgtctatgtatcataactc 72  Q
    |||||||||||||||||||||| ||||||| |||||||||||| |||||| |||||||||||||| ||||    
T  19329911 tacgtgtcagatttttgtgtgggtgtcaaaaggtgtattgccacctaaggatgtctatgtatcattactc 19329842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 1 - 74
Target Start/End: Original strand, 19436216 - 19436289
Alignment:
Q  1 actacgtgtcagatttttgtgtggatgtcaaagggtgtattgccatctaagggtgtctatgtatcataactctt 74  Q
    |||||||||||||||||||||||| ||||||| ||||||||| || |||||| |||||||||||||| ||||||    
T  19436216 actacgtgtcagatttttgtgtgggtgtcaaaaggtgtattgtcacctaaggatgtctatgtatcattactctt 19436289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 1 - 74
Target Start/End: Complemental strand, 38837288 - 38837215
Alignment:
Q  1 actacgtgtcagatttttgtgtggatgtcaaagggtgtattgccatctaagggtgtctatgtatcataactctt 74  Q
    |||||||||||||||||||||| | |||  ||||||||||||||| ||||||||||||||||||||| ||||||    
T  38837288 actacgtgtcagatttttgtgtaggtgtacaagggtgtattgccacctaagggtgtctatgtatcattactctt 38837215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 1 - 74
Target Start/End: Complemental strand, 40957778 - 40957705
Alignment:
Q  1 actacgtgtcagatttttgtgtggatgtcaaagggtgtattgccatctaagggtgtctatgtatcataactctt 74  Q
    |||||||||||||||||||||||| | |||||| ||||||||||| ||||| ||||||||||||||| ||||||    
T  40957778 actacgtgtcagatttttgtgtgggtatcaaagagtgtattgccacctaagagtgtctatgtatcattactctt 40957705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 1 - 72
Target Start/End: Complemental strand, 8238284 - 8238212
Alignment:
Q  1 actacgtgtcagatttttgtgtggatgtcaaagggtgtattgccatcta-agggtgtctatgtatcataactc 72  Q
    ||||| |||||||||||||||||| |||||||||||||||||||| ||| ||||||| |||||||||||||||    
T  8238284 actacatgtcagatttttgtgtgggtgtcaaagggtgtattgccacctacagggtgtttatgtatcataactc 8238212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 4 - 72
Target Start/End: Original strand, 46374834 - 46374902
Alignment:
Q  4 acgtgtcagatttttgtgtggatgtcaaagggtgtattgccatctaagggtgtctatgtatcataactc 72  Q
    ||||||||||||||||||||| ||| ||||||||| |||||| |||||| |||||||||||||||||||    
T  46374834 acgtgtcagatttttgtgtgggtgttaaagggtgtgttgccacctaaggatgtctatgtatcataactc 46374902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 1 - 72
Target Start/End: Original strand, 40846142 - 40846213
Alignment:
Q  1 actacgtgtcagatttttgtgtggatgtcaaagggtgtattgccatctaagggtgtctatgtatcataactc 72  Q
    ||||| ||| ||||||||||||||||||||| ||||||||||||| |||||| ||| |||||||||||||||    
T  40846142 actacatgttagatttttgtgtggatgtcaaggggtgtattgccacctaaggatgtttatgtatcataactc 40846213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 2 - 72
Target Start/End: Complemental strand, 21234471 - 21234401
Alignment:
Q  2 ctacgtgtcagatttttgtgtggatgtcaaagggtgtattgccatctaagggtgtctatgtatcataactc 72  Q
    |||||||||| |||||||||||  ||||||||||||||||| || |||||| |||||||||||||||||||    
T  21234471 ctacgtgtcaaatttttgtgtgagtgtcaaagggtgtattgtcacctaaggatgtctatgtatcataactc 21234401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 1 - 67
Target Start/End: Original strand, 32951522 - 32951588
Alignment:
Q  1 actacgtgtcagatttttgtgtggatgtcaaagggtgtattgccatctaagggtgtctatgtatcat 67  Q
    ||||||||| |||||||||||||||||| ||||| ||||||| |||||||| |||||||||||||||    
T  32951522 actacgtgttagatttttgtgtggatgttaaaggatgtattgtcatctaagagtgtctatgtatcat 32951588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 7 - 73
Target Start/End: Complemental strand, 41915806 - 41915740
Alignment:
Q  7 tgtcagatttttgtgtggatgtcaaagggtgtattgccatctaagggtgtctatgtatcataactct 73  Q
    |||||||||||||||| | |||||| ||||||||||||| |||||||||| ||||||||||||||||    
T  41915806 tgtcagatttttgtgtaggtgtcaaggggtgtattgccacctaagggtgtttatgtatcataactct 41915740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 4 - 71
Target Start/End: Complemental strand, 35522944 - 35522877
Alignment:
Q  4 acgtgtcagatttttgtgtggatgtcaaagggtgtattgccatctaagggtgtctatgtatcataact 71  Q
    ||||||||||||||||||||| ||| ||| ||||||||||||  ||||| ||||||||||||||||||    
T  35522944 acgtgtcagatttttgtgtgggtgttaaatggtgtattgccacttaaggatgtctatgtatcataact 35522877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 4 - 74
Target Start/End: Complemental strand, 18207248 - 18207178
Alignment:
Q  4 acgtgtcagatttttgtgtggatgtcaaagggtgtattgccatctaagggtgtctatgtatcataactctt 74  Q
    |||||| |||||||||| ||| ||||||  |||||||||||| |||||| |||||||||||||||||||||    
T  18207248 acgtgttagatttttgtatgggtgtcaagaggtgtattgccacctaaggttgtctatgtatcataactctt 18207178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 7 - 77
Target Start/End: Complemental strand, 36208238 - 36208168
Alignment:
Q  7 tgtcagatttttgtgtggatgtcaaagggtgtattgccatctaagggtgtctatgtatcataactcttatg 77  Q
    |||||| ||||||||||| |||||| |  |||||| ||| |||||||||||||||||||||||||||||||    
T  36208238 tgtcagctttttgtgtgggtgtcaatgaatgtattaccacctaagggtgtctatgtatcataactcttatg 36208168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 4 - 73
Target Start/End: Complemental strand, 26296712 - 26296643
Alignment:
Q  4 acgtgtcagatttttgtgtggatgtcaaagggtgtattgccatctaagggtgtctatgtatcataactct 73  Q
    |||| |||||||||| ||||||||| ||||||| ||||| || |||||| ||||||||||||||||||||    
T  26296712 acgtatcagatttttatgtggatgttaaagggtatattgtcacctaaggatgtctatgtatcataactct 26296643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 7 - 72
Target Start/End: Original strand, 32564461 - 32564526
Alignment:
Q  7 tgtcagatttttgtgtggatgtcaaagggtgtattgccatctaagggtgtctatgtatcataactc 72  Q
    |||||||||||||||||| |||||| ||||||||||||| |||||  ||| |||||||||||||||    
T  32564461 tgtcagatttttgtgtgggtgtcaaggggtgtattgccacctaagaatgtttatgtatcataactc 32564526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 4 - 73
Target Start/End: Original strand, 46033833 - 46033902
Alignment:
Q  4 acgtgtcagatttttgtgtggatgtcaaagggtgtattgccatctaagggtgtctatgtatcataactct 73  Q
    ||||||||||||||| ||||| ||| |||||||||||||||| |||||  | ||||||||||||||||||    
T  46033833 acgtgtcagatttttatgtgggtgttaaagggtgtattgccacctaagaatatctatgtatcataactct 46033902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 6 - 74
Target Start/End: Original strand, 10343597 - 10343665
Alignment:
Q  6 gtgtcagatttttgtgtggatgtcaaagggtgtattgccatctaagggtgtctatgtatcataactctt 74  Q
    ||||||||||||||||||| ||||||   ||||||| ||| ||||||||||||||||||||| ||||||    
T  10343597 gtgtcagatttttgtgtgggtgtcaagatgtgtatttccacctaagggtgtctatgtatcattactctt 10343665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 4 - 72
Target Start/End: Original strand, 39255955 - 39256023
Alignment:
Q  4 acgtgtcagatttttgtgtggatgtcaaagggtgtattgccatctaagggtgtctatgtatcataactc 72  Q
    ||||||||||||||||| ||| | ||||  |||||||||||| |||||| |||||||||||||||||||    
T  39255955 acgtgtcagatttttgtatgggtatcaagtggtgtattgccacctaaggttgtctatgtatcataactc 39256023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 7 - 74
Target Start/End: Complemental strand, 7727971 - 7727904
Alignment:
Q  7 tgtcagatttttgtgtggatgtcaaagggtgtattgccatctaagggtgtctatgtatcataactctt 74  Q
    |||||||||||| |||| |||||||  |||||||| ||| |||||||||| |||||||||||||||||    
T  7727971 tgtcagatttttatgtgaatgtcaagaggtgtattaccacctaagggtgtttatgtatcataactctt 7727904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #31
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 11 - 74
Target Start/End: Original strand, 35468894 - 35468957
Alignment:
Q  11 agatttttgtgtggatgtcaaagggtgtattgccatctaagggtgtctatgtatcataactctt 74  Q
    |||||||| ||||| ||||||| | ||||||||||||||||| |||||||||||||| ||||||    
T  35468894 agatttttatgtgggtgtcaaatgatgtattgccatctaaggatgtctatgtatcattactctt 35468957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #32
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 1 - 67
Target Start/End: Complemental strand, 3694438 - 3694372
Alignment:
Q  1 actacgtgtcagatttttgtgtggatgtcaaagggtgtattgccatctaagggtgtctatgtatcat 67  Q
    |||||||||||||||||||||||| ||| ||| ||||||||| || |||||||||| ||| ||||||    
T  3694438 actacgtgtcagatttttgtgtgggtgttaaaaggtgtattgtcacctaagggtgtgtatatatcat 3694372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #33
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 26 - 74
Target Start/End: Complemental strand, 11044234 - 11044186
Alignment:
Q  26 tgtcaaagggtgtattgccatctaagggtgtctatgtatcataactctt 74  Q
    ||||||||| |||||||||| ||||||||||||||||||||| ||||||    
T  11044234 tgtcaaaggatgtattgccacctaagggtgtctatgtatcattactctt 11044186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #34
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 16 - 72
Target Start/End: Complemental strand, 31735940 - 31735884
Alignment:
Q  16 tttgtgtggatgtcaaagggtgtattgccatctaagggtgtctatgtatcataactc 72  Q
    ||||||||| ||| |||| ||||||||||| |||||| |||||||||||||||||||    
T  31735940 tttgtgtgggtgttaaagagtgtattgccacctaaggatgtctatgtatcataactc 31735884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #35
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 7 - 72
Target Start/End: Complemental strand, 41423747 - 41423682
Alignment:
Q  7 tgtcagatttttgtgtggatgtcaaagggtgtattgccatctaagggtgtctatgtatcataactc 72  Q
    ||||||||||||||||   ||||||  |||||||| |||||||| | |||||||||||||||||||    
T  41423747 tgtcagatttttgtgtaagtgtcaagaggtgtattaccatctaatgatgtctatgtatcataactc 41423682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #36
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 3 - 74
Target Start/End: Complemental strand, 45223111 - 45223040
Alignment:
Q  3 tacgtgtcagatttttgtgtggatgtcaaagggtgtattgccatctaagggtgtctatgtatcataactctt 74  Q
    |||||||||||||||||||| |||||  |||  |||||||||| |||||| ||| ||| |||||| ||||||    
T  45223111 tacgtgtcagatttttgtgtagatgttcaagaatgtattgccacctaaggatgtatatatatcattactctt 45223040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #37
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 4 - 42
Target Start/End: Original strand, 16374856 - 16374894
Alignment:
Q  4 acgtgtcagatttttgtgtggatgtcaaagggtgtattg 42  Q
    |||||||||||||||||||||||||||| || |||||||    
T  16374856 acgtgtcagatttttgtgtggatgtcaagggatgtattg 16374894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0321 (Bit Score: 58; Significance: 3e-24; HSPs: 1)
Name: scaffold0321
Description:

Target: scaffold0321; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 1 - 74
Target Start/End: Original strand, 10138 - 10211
Alignment:
Q  1 actacgtgtcagatttttgtgtggatgtcaaagggtgtattgccatctaagggtgtctatgtatcataactctt 74  Q
    |||||||||||||||||| ||||||||||||||| |||||||||| |||| |||||||||||||||||||||||    
T  10138 actacgtgtcagatttttatgtggatgtcaaaggatgtattgccacctaaaggtgtctatgtatcataactctt 10211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 57; Significance: 1e-23; HSPs: 22)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 1 - 65
Target Start/End: Complemental strand, 32869749 - 32869685
Alignment:
Q  1 actacgtgtcagatttttgtgtggatgtcaaagggtgtattgccatctaagggtgtctatgtatc 65  Q
    |||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||    
T  32869749 actacgtgtcagatttttgtgtgggtgtcaaagggtgtattgccacctaagggtgtctatgtatc 32869685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 1 - 60
Target Start/End: Original strand, 31109429 - 31109488
Alignment:
Q  1 actacgtgtcagatttttgtgtggatgtcaaagggtgtattgccatctaagggtgtctat 60  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  31109429 actacgtgtcagatttttgtgtggatgtcaaagggtgtattgccacctaagggtgtctat 31109488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 1 - 67
Target Start/End: Original strand, 22880687 - 22880753
Alignment:
Q  1 actacgtgtcagatttttgtgtggatgtcaaagggtgtattgccatctaagggtgtctatgtatcat 67  Q
    ||||||||||||| |||||||||| |||||||||||||||||||| |||||||||||||||||||||    
T  22880687 actacgtgtcagaattttgtgtgggtgtcaaagggtgtattgccacctaagggtgtctatgtatcat 22880753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 7 - 76
Target Start/End: Original strand, 15990077 - 15990146
Alignment:
Q  7 tgtcagatttttgtgtggatgtcaaagggtgtattgccatctaagggtgtctatgtatcataactcttat 76  Q
    |||||||||||||||||| |||||| ||||||||||||| |||||||||| |||||||||||||||||||    
T  15990077 tgtcagatttttgtgtgggtgtcaaggggtgtattgccacctaagggtgtttatgtatcataactcttat 15990146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 1 - 72
Target Start/End: Complemental strand, 29857898 - 29857827
Alignment:
Q  1 actacgtgtcagatttttgtgtggatgtcaaagggtgtattgccatctaagggtgtctatgtatcataactc 72  Q
    |||||||||||||||||||||||| ||| ||| ||||||||||||||||| |||||||||||||||| ||||    
T  29857898 actacgtgtcagatttttgtgtgggtgttaaaaggtgtattgccatctaaaggtgtctatgtatcattactc 29857827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 7 - 74
Target Start/End: Original strand, 30341395 - 30341462
Alignment:
Q  7 tgtcagatttttgtgtggatgtcaaagggtgtattgccatctaagggtgtctatgtatcataactctt 74  Q
    |||||||||||||||||| |||||| ||||||||||||| |||||||||| |||||||||||||||||    
T  30341395 tgtcagatttttgtgtgggtgtcaaggggtgtattgccacctaagggtgtttatgtatcataactctt 30341462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 7 - 72
Target Start/End: Original strand, 15508059 - 15508124
Alignment:
Q  7 tgtcagatttttgtgtggatgtcaaagggtgtattgccatctaagggtgtctatgtatcataactc 72  Q
    |||||||||||||||||| |||||| ||||||||||||| |||||||||| |||||||||||||||    
T  15508059 tgtcagatttttgtgtgggtgtcaaggggtgtattgccacctaagggtgtttatgtatcataactc 15508124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 4 - 73
Target Start/End: Complemental strand, 31976316 - 31976247
Alignment:
Q  4 acgtgtcagatttttgtgtggatgtcaaagggtgtattgccatctaagggtgtctatgtatcataactct 73  Q
    ||||||||||||||||||||| ||| ||||||| |||||||| |||||| ||||||||||||||||||||    
T  31976316 acgtgtcagatttttgtgtgggtgttaaagggtatattgccacctaaggatgtctatgtatcataactct 31976247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 4 - 72
Target Start/End: Complemental strand, 17598622 - 17598554
Alignment:
Q  4 acgtgtcagatttttgtgtggatgtcaaagggtgtattgccatctaagggtgtctatgtatcataactc 72  Q
    ||||||||||||||||||||| ||||||| | |||||||||| ||||||||||||||||||||| ||||    
T  17598622 acgtgtcagatttttgtgtgggtgtcaaaagatgtattgccacctaagggtgtctatgtatcattactc 17598554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 3 - 74
Target Start/End: Original strand, 31110792 - 31110861
Alignment:
Q  3 tacgtgtcagatttttgtgtggatgtcaaagggtgtattgccatctaagggtgtctatgtatcataactctt 74  Q
    ||||||||||||||||||| |  |||||||||||||||||||| |||||| |||||||||||||||||||||    
T  31110792 tacgtgtcagatttttgtgag--tgtcaaagggtgtattgccacctaaggatgtctatgtatcataactctt 31110861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 1 - 73
Target Start/End: Complemental strand, 11427689 - 11427615
Alignment:
Q  1 actacgtgtcagatttttgtgtggatgtcaaagggtgtattgccatcta--agggtgtctatgtatcataactct 73  Q
    |||||||||||||||||||||||| ||||||||| |||||||||| |||  |||||||||||||||||| |||||    
T  11427689 actacgtgtcagatttttgtgtgggtgtcaaaggatgtattgccacctaagagggtgtctatgtatcattactct 11427615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 1 - 74
Target Start/End: Original strand, 6209494 - 6209567
Alignment:
Q  1 actacgtgtcagatttttgtgtggatgtcaaagggtgtattgccatctaagggtgtctatgtatcataactctt 74  Q
    |||||||| ||||||||||||||  |||||||  ||||||||||| ||||||||||||||||||||| ||||||    
T  6209494 actacgtgacagatttttgtgtgagtgtcaaatagtgtattgccacctaagggtgtctatgtatcattactctt 6209567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 5 - 67
Target Start/End: Original strand, 28536519 - 28536581
Alignment:
Q  5 cgtgtcagatttttgtgtggatgtcaaagggtgtattgccatctaagggtgtctatgtatcat 67  Q
    |||||||||||||||||||| |||||| || |||||||||| |||||| ||| ||||||||||    
T  28536519 cgtgtcagatttttgtgtgggtgtcaagggttgtattgccacctaaggatgtttatgtatcat 28536581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 1 - 74
Target Start/End: Complemental strand, 15832648 - 15832575
Alignment:
Q  1 actacgtgtcagatttttgtgtggatgtcaaagggtgtattgccatctaagggtgtctatgtatcataactctt 74  Q
    ||||||||||| |||||||||||| ||||||| | | ||||| || |||| |||||||||||||||| ||||||    
T  15832648 actacgtgtcaaatttttgtgtgggtgtcaaatgatttattgtcacctaaaggtgtctatgtatcattactctt 15832575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 7 - 72
Target Start/End: Original strand, 31953065 - 31953130
Alignment:
Q  7 tgtcagatttttgtgtggatgtcaaagggtgtattgccatctaagggtgtctatgtatcataactc 72  Q
    |||||||||||| ||||| |||||| ||||||||||||| |||||| ||||||| |||||| ||||    
T  31953065 tgtcagatttttatgtgggtgtcaaggggtgtattgccacctaaggatgtctatctatcattactc 31953130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 4 - 72
Target Start/End: Complemental strand, 4231616 - 4231548
Alignment:
Q  4 acgtgtcagatttttgtgtggatgtcaaagggtgtattgccatctaagggtgtctatgtatcataactc 72  Q
    ||||||||||||||||||||| || ||| ||||||||||||| |||| | ||| |||| ||||||||||    
T  4231616 acgtgtcagatttttgtgtgggtggcaaggggtgtattgccacctaatgatgtttatgaatcataactc 4231548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 4 - 68
Target Start/End: Original strand, 9379744 - 9379808
Alignment:
Q  4 acgtgtcagatttttgtgtggatgtcaaagggtgtattgccatctaagggtgtctatgtatcata 68  Q
    |||||||| |||||||| ||| |||||| || ||||||| ||||||||| |||||||||||||||    
T  9379744 acgtgtcaaatttttgtatgggtgtcaagggatgtattgtcatctaaggatgtctatgtatcata 9379808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 1 - 67
Target Start/End: Original strand, 23128156 - 23128222
Alignment:
Q  1 actacgtgtcagatttttgtgtggatgtcaaagggtgtattgccatctaagggtgtctatgtatcat 67  Q
    |||||||||||||||||||||||| ||||||||| ||||||  ||  ||| ||||||||| ||||||    
T  23128156 actacgtgtcagatttttgtgtgggtgtcaaaggatgtattatcacataaaggtgtctatatatcat 23128222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 1 - 65
Target Start/End: Complemental strand, 946447 - 946383
Alignment:
Q  1 actacgtgtcagatttttgtgtggatgtcaaagggtgtattgccatctaagggtgtctatgtatc 65  Q
    |||| |||||||||||||| || | ||||||||||||||||  || |||||| ||||||||||||    
T  946447 actaggtgtcagatttttgggtaggtgtcaaagggtgtattatcacctaaggatgtctatgtatc 946383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 4 - 74
Target Start/End: Complemental strand, 12732550 - 12732480
Alignment:
Q  4 acgtgtcagatttttgtgtggatgtcaaagggtgtattgccatctaagggtgtctatgtatcataactctt 74  Q
    ||||||||||||||||||||| |||||| |  | ||||||||  ||||  |||||||||||||| ||||||    
T  12732550 acgtgtcagatttttgtgtgggtgtcaatgattatattgccacttaagaatgtctatgtatcattactctt 12732480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 4 - 45
Target Start/End: Original strand, 30014468 - 30014508
Alignment:
Q  4 acgtgtcagatttttgtgtggatgtcaaagggtgtattgcca 45  Q
    |||||||||| |||||||||||||| ||||||||||||||||    
T  30014468 acgtgtcagaattttgtgtggatgt-aaagggtgtattgcca 30014508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 4 - 45
Target Start/End: Original strand, 30736107 - 30736147
Alignment:
Q  4 acgtgtcagatttttgtgtggatgtcaaagggtgtattgcca 45  Q
    |||||||||| |||||||||||||| ||||||||||||||||    
T  30736107 acgtgtcagaattttgtgtggatgt-aaagggtgtattgcca 30736147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0237 (Bit Score: 52; Significance: 1e-20; HSPs: 1)
Name: scaffold0237
Description:

Target: scaffold0237; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 1 - 72
Target Start/End: Complemental strand, 4100 - 4029
Alignment:
Q  1 actacgtgtcagatttttgtgtggatgtcaaagggtgtattgccatctaagggtgtctatgtatcataactc 72  Q
    |||||||||||||||||||||||| ||| ||| ||||||||||||||||| |||||||||||||||| ||||    
T  4100 actacgtgtcagatttttgtgtgggtgttaaaaggtgtattgccatctaaaggtgtctatgtatcattactc 4029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1268 (Bit Score: 48; Significance: 3e-18; HSPs: 1)
Name: scaffold1268
Description:

Target: scaffold1268; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 1 - 72
Target Start/End: Original strand, 958 - 1029
Alignment:
Q  1 actacgtgtcagatttttgtgtggatgtcaaagggtgtattgccatctaagggtgtctatgtatcataactc 72  Q
    |||||||||||| ||||||||||||||| |||||||||||||||| |||| | |||||||||||||| ||||    
T  958 actacgtgtcagttttttgtgtggatgttaaagggtgtattgccacctaaagatgtctatgtatcattactc 1029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1267 (Bit Score: 48; Significance: 3e-18; HSPs: 1)
Name: scaffold1267
Description:

Target: scaffold1267; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 1 - 72
Target Start/End: Original strand, 958 - 1029
Alignment:
Q  1 actacgtgtcagatttttgtgtggatgtcaaagggtgtattgccatctaagggtgtctatgtatcataactc 72  Q
    |||||||||||| ||||||||||||||| |||||||||||||||| |||| | |||||||||||||| ||||    
T  958 actacgtgtcagttttttgtgtggatgttaaagggtgtattgccacctaaagatgtctatgtatcattactc 1029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0018 (Bit Score: 34; Significance: 0.0000000007; HSPs: 1)
Name: scaffold0018
Description:

Target: scaffold0018; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 7 - 56
Target Start/End: Complemental strand, 152563 - 152514
Alignment:
Q  7 tgtcagatttttgtgtggatgtcaaagggtgtattgccatctaagggtgt 56  Q
    |||||||||||||||||| |||||| ||||||||||||| | ||||||||    
T  152563 tgtcagatttttgtgtgggtgtcaaggggtgtattgccacccaagggtgt 152514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0110 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0110
Description:

Target: scaffold0110; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 72
Target Start/End: Original strand, 8892 - 8963
Alignment:
Q  1 actacgtgtcagatttttgtgtggatgtcaaagggtgtattgccatctaagggtgtctatgtatcataactc 72  Q
    |||| |||||| |||||||||| |||||||||  |||||||| ||  ||||| ||||||| |||||||||||    
T  8892 actatgtgtcaaatttttgtgtagatgtcaaatagtgtattgtcacttaaggatgtctatatatcataactc 8963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0187 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: scaffold0187
Description:

Target: scaffold0187; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 4 - 45
Target Start/End: Complemental strand, 14164 - 14124
Alignment:
Q  4 acgtgtcagatttttgtgtggatgtcaaagggtgtattgcca 45  Q
    |||||||||| |||||||||||||| ||||||||||||||||    
T  14164 acgtgtcagaattttgtgtggatgt-aaagggtgtattgcca 14124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0187; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 4 - 45
Target Start/End: Complemental strand, 24492 - 24452
Alignment:
Q  4 acgtgtcagatttttgtgtggatgtcaaagggtgtattgcca 45  Q
    |||||||||| |||||||||||||| ||||||||||||||||    
T  24492 acgtgtcagaattttgtgtggatgt-aaagggtgtattgcca 24452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University