View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1706_low_17 (Length: 455)
Name: NF1706_low_17
Description: NF1706
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1706_low_17 |
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| [»] scaffold0504 (1 HSPs) |
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Alignment Details
Target: scaffold0504 (Bit Score: 370; Significance: 0; HSPs: 1)
Name: scaffold0504
Description:
Target: scaffold0504; HSP #1
Raw Score: 370; E-Value: 0
Query Start/End: Original strand, 16 - 445
Target Start/End: Original strand, 7861 - 8290
Alignment:
| Q |
16 |
acaaccacaacaggtcaagtgctgaggatggagaagtttctgaaagcttgaatgtgtttgatgtattgagatatcttgctaatactgctaataaagtaga |
115 |
Q |
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| T |
7861 |
acaaccacaacaggtcaagtggtgagggtggagaagtttctgaaagcttgaatgtgtttgatgtattgagatatcttgctaataccgctaataaagtaga |
7960 |
T |
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| Q |
116 |
agatgatggtcttactttgttggaatctcttaagcgtgccggtattaaatttcctcgtccaagttgttggtcggacgatatgaaatctgaactcttcaac |
215 |
Q |
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| T |
7961 |
agatgatggtcttactttgttggaatctcttaagcgtgccggtattaaatttcctcgtccaagttggtggtcggacgatatgaaatctgaactcttcaac |
8060 |
T |
|
| Q |
216 |
tttgatgatgaagagcagaggaagtgaagctcttcagtgatccattttttgagggtattgatggttctttcatggatgaatgattcccttgcattttcag |
315 |
Q |
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| T |
8061 |
tttgatgatgaagagcagaggaagtgaagctcttcagtgatccattttttgagggtattgatggttctttcatggatgaatgattcccttgcactttaaa |
8160 |
T |
|
| Q |
316 |
ttgttttttgatgtttaactaactatgatgttgtatggtagtgttctaatttctatcatgttttgttttgaatgttgtctaacctttgtaactgtggttc |
415 |
Q |
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| T |
8161 |
ttgtcttttgctgtttaactaactatgatattgtatggtagtgttctaatttctatcatgttttgttttgaatgttgtctaacatttgtaactgtggttc |
8260 |
T |
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| Q |
416 |
tgaactctagttaatattaaccaccctatg |
445 |
Q |
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| T |
8261 |
agaactttaggtaatattaaccaccttatg |
8290 |
T |
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Target: chr7 (Bit Score: 125; Significance: 3e-64; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 125; E-Value: 3e-64
Query Start/End: Original strand, 251 - 440
Target Start/End: Complemental strand, 12026421 - 12026226
Alignment:
| Q |
251 |
agtgatccattttttgagggtattgatggttctttcatggatgaatgattcccttgcattttcagttgttttttgatgtttaactaactatgatgtt--- |
347 |
Q |
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| T |
12026421 |
agtgatccattttttgagggtattgatggttctttcatgaatgaatgattcccttgcactttaaattgtcttttcatgtttaactaactatgatgttgta |
12026322 |
T |
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| Q |
348 |
---gtatggtagtgttctaatttctatcatgttttgttttgaatgttgtctaacctttgtaactgtggttctgaactctagttaatattaaccacc |
440 |
Q |
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| T |
12026321 |
tcggtatggtagggttctaatttctatcatgttttgttttgaatgatgtctaacatttgtatctgtggttcggaactttagttaatattaaccacc |
12026226 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 69; Significance: 9e-31; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 69; E-Value: 9e-31
Query Start/End: Original strand, 113 - 217
Target Start/End: Original strand, 54631869 - 54631973
Alignment:
| Q |
113 |
agaagatgatggtcttactttgttggaatctcttaagcgtgccggtattaaatttcctcgtccaagttgttggtcggacgatatgaaatctgaactcttc |
212 |
Q |
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|||||||||||||||||||||||||||| || | |||||||| |||||||||||||||||||| || || ||| | |||||||||||||||||||||||| |
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| T |
54631869 |
agaagatgatggtcttactttgttggaaactttaaagcgtgctggtattaaatttcctcgtccgagctggtggcccgacgatatgaaatctgaactcttc |
54631968 |
T |
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| Q |
213 |
aactt |
217 |
Q |
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| T |
54631969 |
aactt |
54631973 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 64; Significance: 8e-28; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 113 - 248
Target Start/End: Original strand, 18189434 - 18189569
Alignment:
| Q |
113 |
agaagatgatggtcttactttgttggaatctcttaagcgtgccggtattaaatttcctcgtccaagttgttggtcggacgatatgaaatctgaactcttc |
212 |
Q |
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| T |
18189434 |
agaagatgatggtcttactttgctggaaactctaaagcgttctggtgttaatttacctcgtccaagttggtggccggaggatatgaaatctcaactcttc |
18189533 |
T |
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| Q |
213 |
aactttgatgatgaagagcagaggaagtgaagctct |
248 |
Q |
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| T |
18189534 |
aacttcgatgataaggaggagaggaaatgaaactct |
18189569 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 330 - 421
Target Start/End: Original strand, 18189679 - 18189766
Alignment:
| Q |
330 |
ttaactaactatgatgttgtatggtagtg-ttctaatttctatcatgttttgttttgaatgttgtctaacctttgtaactgtggttctgaact |
421 |
Q |
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| T |
18189679 |
ttaactaactatgatgttgtaaggtagtgattctaattttgatca-----tgttttgaatgttggctaacatttgtaactgtggttcagaact |
18189766 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 147 - 224
Target Start/End: Complemental strand, 39487197 - 39487120
Alignment:
| Q |
147 |
aagcgtgccggtattaaatttcctcgtccaagttgttggtcggacgatatgaaatctgaactcttcaactttgatgat |
224 |
Q |
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| T |
39487197 |
aagcgtgctggtattacttttcctcgtccaagctggtggccggacgatatgaaatccgaaatcttcaattttgatgat |
39487120 |
T |
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