View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1706_low_19 (Length: 440)
Name: NF1706_low_19
Description: NF1706
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1706_low_19 |
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| [»] chr2 (3 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 350; Significance: 0; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 350; E-Value: 0
Query Start/End: Original strand, 11 - 440
Target Start/End: Original strand, 6540378 - 6540808
Alignment:
| Q |
11 |
cagagaagtctattttggttgtaattaaataattttatannnnnnnacctttaattgatgagtatttactaaaatgaataacatggtaacatttt-ttat |
109 |
Q |
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| T |
6540378 |
cagagaagtctattttggttgtaattaaataattttttatttttttacctttaattgatgagtatttactaaaatgaatgacatggtaacatttttttat |
6540477 |
T |
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| Q |
110 |
acaagcagtgttctaagggatccaaataactgactgtagttctctctcatgttgcaagaaatttgtattgtttatataacggactagaaaagagaacaat |
209 |
Q |
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| T |
6540478 |
acaagcagtgttctaagggatccaaataactgactgtagctctctctcatgttgcaagaaatttgtattgtttatataacggactaaaaaagagaacaat |
6540577 |
T |
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| Q |
210 |
atccgatttaaatgttaatggactagaaaacaaacgctcaaaaagttggaaaagtgcagccaatttagcattcttttgctgagtcttgagaaaagggtta |
309 |
Q |
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| T |
6540578 |
atccgatttatatgttaatggactagaaaacaaacgctcaaaaggttggaaaagtgcagccaatttagcattcttttgctgagtcttgagaaaagggtta |
6540677 |
T |
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| Q |
310 |
ttcctagggtatctttcttgaaattttttgagtccaaaggtttgattaaggatgctaaattggcttcacctttccaactttctgagtgtttgtttttcaa |
409 |
Q |
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| T |
6540678 |
ttcttagggcatctttcttgaaatttcttgtgtccaaaggtttgattaaggatgctaaattggcttcatctttccaactttatgagtgtttgtttttcaa |
6540777 |
T |
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| Q |
410 |
gaaattcgtgaattgctttgaggaagaagct |
440 |
Q |
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| T |
6540778 |
gaagttcgtgaattgctttgaggaagaagct |
6540808 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 280 - 440
Target Start/End: Original strand, 6543040 - 6543200
Alignment:
| Q |
280 |
ttcttttgctgagtcttgagaaaagggttattcctagggtatctttcttgaaattttttgagtccaaaggtttgattaaggatgctaaattggcttcacc |
379 |
Q |
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| T |
6543040 |
ttcttttgttgagtcttgagaaaagggttattcctagagcttttgtcttgaaatttcttgaatccaaaggtttgattaaggatgctaaattggctgcagc |
6543139 |
T |
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| Q |
380 |
tttccaactttctgagtgtttgtttttcaagaaattcgtgaattgctttgaggaagaagct |
440 |
Q |
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| T |
6543140 |
tttcaaagtttctgaggatgtgtttttgaagagatttgtgacttgctacgaggaagaagct |
6543200 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 280 - 439
Target Start/End: Original strand, 6534291 - 6534450
Alignment:
| Q |
280 |
ttcttttgctgagtcttgagaaaagggttattcctagggtatctttcttgaaattttttgagtccaaaggtttgattaaggatgctaaattggcttcacc |
379 |
Q |
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| T |
6534291 |
ttcttatgatgagtttagagaaaagggttattcctagggcttttgttttgaaatttcttcaatccaaaggtttgattaaggatgctaagttggctgcacc |
6534390 |
T |
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| Q |
380 |
tttccaactttctgagtgtttgtttttcaagaaattcgtgaattgctttgaggaagaagc |
439 |
Q |
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| T |
6534391 |
tttcaaagtctctgaggatctgtttttgaagagatatgtgaattgctttgaggaagaagc |
6534450 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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