View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1706_low_2 (Length: 654)
Name: NF1706_low_2
Description: NF1706
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1706_low_2 |
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Alignment Details
Target: chr1 (Bit Score: 394; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 394; E-Value: 0
Query Start/End: Original strand, 19 - 641
Target Start/End: Complemental strand, 45597165 - 45596547
Alignment:
| Q |
19 |
tctttaacaactatgccctaagcttgataaacgataaacttgtaaaaattatagtactgttacagagttgtcaatttcagatgtatttccatagcttcaa |
118 |
Q |
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| T |
45597165 |
tctttaacaactatgccctaagcttaataaacgataaacttgtaaaaattatagtactgttatagagttgtcaatttcatatgtatttccatagcttcaa |
45597066 |
T |
|
| Q |
119 |
ggannnnnnnncttctgtctttggatctttcaagactttttgaatgaattcttttacaaaactaacataaacttcctattttacattaaagtgcccttgg |
218 |
Q |
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||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45597065 |
ggattttttttcttcagtctttggatctttcaagactttttgaatgaattcttttacaaaactaacataaacttcctattttacattaaagtgcccttgg |
45596966 |
T |
|
| Q |
219 |
tgtatttgtttagaagtccaaaaaaaatcnnnnnnnnnnnnaaattgtgtattcaacgtattaaaactttaaaaagtaacttattttatataaattttat |
318 |
Q |
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| T |
45596965 |
tgtatttgtttagaaatccaaaaaaaatcttttttttttt-aaattgtgtattcaacgtattaaaa--------agaaacttattttatataaattttat |
45596875 |
T |
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| Q |
319 |
aaaatctttctcttttgaatccttaataagtgtttttggaagaattgttaacgtaannnnnnnaaaa-gtttatagtaannnnnnncttctttatgtaaa |
417 |
Q |
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| T |
45596874 |
aaaatctttctcttttgaatccttaataagtgtttttagaacaattgttaaagtaattttttaaaaaagtttatagtaatttttttcttttttatgtaaa |
45596775 |
T |
|
| Q |
418 |
ctcaactcgatttgactagtgagcagttcagttggaccattaatccgataaaatagtactactagatatgaacttctatctacttactattggaagacag |
517 |
Q |
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| T |
45596774 |
ctcaactcgatttgactagtgagcagttcagttggaccattaatccgataaaatagtactactagatatgaacttctatc----tactattggaagacag |
45596679 |
T |
|
| Q |
518 |
catagaatggatgatcgaattgttttttatctttccatctacaggagagattaatgtcaca--------caccctcctgtcaaaaaataaagagaaatta |
609 |
Q |
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| T |
45596678 |
catagaatggatgatcgaattgttttttatctttccatctacacaagagattaatgtcacacatttccccaccctcctgtcaaaaaataaagagaaatta |
45596579 |
T |
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| Q |
610 |
tgaaaatgaattgtagaagcccacgttgagaa |
641 |
Q |
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| T |
45596578 |
tgaaaatgaattgtagaagcccacgttgagaa |
45596547 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 263 - 300
Target Start/End: Original strand, 44529287 - 44529324
Alignment:
| Q |
263 |
ttgtgtattcaacgtattaaaactttaaaaagtaactt |
300 |
Q |
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| T |
44529287 |
ttgtgtattcaacatattaaaacattaaaaagtaactt |
44529324 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 36; Significance: 0.00000000006; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 260 - 350
Target Start/End: Complemental strand, 28198096 - 28198005
Alignment:
| Q |
260 |
aaattgtgtattcaacgtattaaaactttaaaaagtaacttattttatataaattttataaaatcttt-ctcttttgaatccttaataagtg |
350 |
Q |
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| T |
28198096 |
aaattgtgtattcaagacattgaaacttcaaaaagaaactttttctacataaattttataaattatttcctcttttgaatccttaacaagtg |
28198005 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 36; Significance: 0.00000000006; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 260 - 350
Target Start/End: Complemental strand, 39575558 - 39575467
Alignment:
| Q |
260 |
aaattgtgtattcaacgtattaaaactttaaaaagtaacttattttatataaattttataaaatctttc-tcttttgaatccttaataagtg |
350 |
Q |
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| T |
39575558 |
aaattgtgtatttaacacattgaaacttcaaaaagaaactttttatacataaaatttataaattatttcctcttttgaatccttaataagtg |
39575467 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 33; Significance: 0.000000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 260 - 339
Target Start/End: Complemental strand, 32931585 - 32931505
Alignment:
| Q |
260 |
aaattgtgtattcaacgtattaaaactttaaaaagtaacttattttatataaattttataaa-atctttctcttttgaatc |
339 |
Q |
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| T |
32931585 |
aaattgtgtattcaacccattgaagttttaaaaagaaacattttttatataaaatttataaataactttctcttttgaatc |
32931505 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 260 - 321
Target Start/End: Original strand, 45185463 - 45185523
Alignment:
| Q |
260 |
aaattgtgtattcaacgtattaaaactttaaaaagtaacttattttatataaattttataaa |
321 |
Q |
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| T |
45185463 |
aaattgtatattcaacatattaaaactttaaaaagaaaatta-tttacataaaatttataaa |
45185523 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 268 - 321
Target Start/End: Original strand, 41247846 - 41247899
Alignment:
| Q |
268 |
tattcaacgtattaaaactttaaaaagtaacttattttatataaattttataaa |
321 |
Q |
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| T |
41247846 |
tattcaacgcattaaaactttaaaatataattgtttttatataaattttataaa |
41247899 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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