View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1706_low_23 (Length: 354)
Name: NF1706_low_23
Description: NF1706
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1706_low_23 |
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Alignment Details
Target: chr3 (Bit Score: 220; Significance: 1e-121; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 104 - 339
Target Start/End: Original strand, 47351708 - 47351943
Alignment:
| Q |
104 |
aaagttttagtttcattcgttgctttttctcggcagaggatggaaaatgggtggactagaagaactttcttagattattagagtgttaatcaataagagc |
203 |
Q |
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| T |
47351708 |
aaagttttagtttcattcgttgctttttctcggcagaggatggaaaatgggtggactagaagaactttcttagattattagagagttaatcaataagagc |
47351807 |
T |
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| Q |
204 |
tgataattggaacacatgatttagtattttaaaccatactcctgctctctagattcgttatattcatccggctttgagtttttaatctgatatgaaaaag |
303 |
Q |
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| T |
47351808 |
ttataattggaacacatgatttagtattttaaaccatactcctgctttctagattccttatattcatccggctttgagtttttaatctgatatgaaaaag |
47351907 |
T |
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| Q |
304 |
tctaatggcgtcacaaattactgtgaagtgattgct |
339 |
Q |
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| T |
47351908 |
tctaatggcgtcacaaattactgtgaagtgattgct |
47351943 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 14 - 112
Target Start/End: Original strand, 47350995 - 47351093
Alignment:
| Q |
14 |
atcaaccaacactcacataagaatttgattcaacaaaaacaattctagtagttatacataataactagagatcaatttttatacatgtaaaaagtttta |
112 |
Q |
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| T |
47350995 |
atcaaacaagactcacataagaatttgatccaacaaaaacaattttagtagttatacataataactagagatcaatttttatacatgtaaaaagtttta |
47351093 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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