View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1706_low_24 (Length: 352)
Name: NF1706_low_24
Description: NF1706
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1706_low_24 |
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Alignment Details
Target: chr3 (Bit Score: 276; Significance: 1e-154; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 13 - 338
Target Start/End: Original strand, 38389003 - 38389330
Alignment:
| Q |
13 |
aatatcataacaagaaaattgtttagaagaaaactatcaactcgctcactatctgcaacacgcttctaaacacattttctaattggctgaaatacaaatg |
112 |
Q |
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| T |
38389003 |
aatatcataacaagaaaattgtttagaagaaaactatcaactcactcactatctgcaacacgcttctaaacacattttctaattggttaaaatacaaatg |
38389102 |
T |
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| Q |
113 |
gattataataaatcatgtaaatttcatatgatttcagacgaatttatttaaatgtcaatgaatt--agagtgtatgctgaaaaaattgttttagagtatg |
210 |
Q |
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| T |
38389103 |
gattataataaatcatgtaaatctcatatgatttcagacgaatttatttaaatgtcaatgaattagagagtgtatgctgaaaaaattgttttagagtatg |
38389202 |
T |
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| Q |
211 |
tttctagtacaattcaaatgtttatttcaccctcggtgcgaaaagcgtacacgaatacttctttcatcacannnnnnnaataaaccaaagaaatatgtta |
310 |
Q |
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|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
38389203 |
tttctagtacaattcaaatgtttatttcaccctcggtgtgaaaagcgtacacgaatacttctttcatcacatttttttaataaaccaaagaaatatgtta |
38389302 |
T |
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| Q |
311 |
ataaattactcaaaacgtaagacgtgtg |
338 |
Q |
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|||||||||||||||||||||||||||| |
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| T |
38389303 |
ataaattactcaaaacgtaagacgtgtg |
38389330 |
T |
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