View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1706_low_25 (Length: 348)
Name: NF1706_low_25
Description: NF1706
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1706_low_25 |
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| [»] scaffold0504 (2 HSPs) |
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Alignment Details
Target: scaffold0504 (Bit Score: 160; Significance: 3e-85; HSPs: 2)
Name: scaffold0504
Description:
Target: scaffold0504; HSP #1
Raw Score: 160; E-Value: 3e-85
Query Start/End: Original strand, 152 - 347
Target Start/End: Complemental strand, 8457 - 8262
Alignment:
| Q |
152 |
gctatgtggggtatgacactatgcattgctatcacattgtatgctttccaacacaacaaatccacaattatccgttctgtgtatttggtagtacatggaa |
251 |
Q |
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| T |
8457 |
gctatgtggggtatgacactatgcattgctatcacattgtatgctttccaacacaacaaatccacaattatccgttctgtgtatttggtagcacatggaa |
8358 |
T |
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| Q |
252 |
caaagattttacctgcagaaaattttggaaatcctctacaagagcatatataaatttagatcataatcataaggtggttaatgttaactagagttc |
347 |
Q |
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| T |
8357 |
caaagattttacctgcagaaacttttggaaatactctacacgataatatataaatttagatcataatcataaggtggttaatattacctaaagttc |
8262 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0504; HSP #2
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 1 - 124
Target Start/End: Complemental strand, 8611 - 8488
Alignment:
| Q |
1 |
ttcaattcaatcacttggtcaacatgtgttggattggatcctataaaatatatataatgaagttttttcacttacagaacatgacacaaacttcattttc |
100 |
Q |
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| T |
8611 |
ttcaattcaatcacttggtcagcatgtgttggattggatcctataaaatatagataataaagttttttcacttacagaatatgacacaaacttcattttc |
8512 |
T |
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| Q |
101 |
agttgaagcatcaaagaagcatct |
124 |
Q |
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| T |
8511 |
agttgaagcatcaaagaagcatct |
8488 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 125; Significance: 2e-64; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 191 - 347
Target Start/End: Original strand, 12026093 - 12026249
Alignment:
| Q |
191 |
tatgctttccaacacaacaaatccacaattatccgttctgtgtatttggtagtacatggaacaaagattttacctgcagaaaattttggaaatcctctac |
290 |
Q |
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| T |
12026093 |
tatgctttccaattcaacaaatccaccattatccattctatgtatttggtagtacatggaacaaagattttacctgcagaaaattttggaaatcctctac |
12026192 |
T |
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| Q |
291 |
aagagcatatataaatttagatcataatcataaggtggttaatgttaactagagttc |
347 |
Q |
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| T |
12026193 |
aagagcatatataaatttagatcataatcaaaaggtggttaatattaactaaagttc |
12026249 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 3 - 124
Target Start/End: Original strand, 12025915 - 12026029
Alignment:
| Q |
3 |
caattcaatcacttggtcaacatgtgttggattggatcctataaaatatatataatgaagttttttcacttacagaacatgacacaaacttcattttcag |
102 |
Q |
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| T |
12025915 |
caattcaatcacttgggcaccatgtgttggattggatcctataga-------taatgaagttttttcacttacagaatatgacacaaacttcattttcag |
12026007 |
T |
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| Q |
103 |
ttgaagcatcaaagaagcatct |
124 |
Q |
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|| ||||||| ||||||||||| |
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| T |
12026008 |
ttcaagcatctaagaagcatct |
12026029 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 56 - 112
Target Start/End: Complemental strand, 18190003 - 18189947
Alignment:
| Q |
56 |
aatgaagttttttcacttacagaacatgacacaaacttcattttcagttgaagcatc |
112 |
Q |
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| T |
18190003 |
aatgaagtttttttacttacagaatacaacacaaacttcattttcagttgaagcatc |
18189947 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 287 - 333
Target Start/End: Complemental strand, 18189817 - 18189771
Alignment:
| Q |
287 |
ctacaagagcatatataaatttagatcataatcataaggtggttaat |
333 |
Q |
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| T |
18189817 |
ctacatgagcatatataaatttagatcataatcacaaggtggttaat |
18189771 |
T |
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