View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1706_low_26 (Length: 340)

Name: NF1706_low_26
Description: NF1706
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1706_low_26
NF1706_low_26
[»] scaffold0771 (2 HSPs)
scaffold0771 (10-272)||(2343-2606)
scaffold0771 (228-321)||(2247-2340)
[»] chr3 (4 HSPs)
chr3 (10-272)||(13950203-13950466)
chr3 (11-241)||(20900680-20900912)
chr3 (228-321)||(13950107-13950200)
chr3 (237-321)||(20900339-20900423)


Alignment Details
Target: scaffold0771 (Bit Score: 228; Significance: 1e-126; HSPs: 2)
Name: scaffold0771
Description:

Target: scaffold0771; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 10 - 272
Target Start/End: Complemental strand, 2606 - 2343
Alignment:
Q  10 gccgactccatatgacaagaagcaaatcatattttaatcagcatctatgttcgataaatgttcgtccaattttcttatacaagtaaattggtaacaggag 109  Q
    ||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||| |||||||||||||| ||||||||||||||||||| ||    
T  2606 gccgactccatatgacaagaagcaaatcatattttaatcagcatccattttcgataaatgtttgtccaattttcttagacaagtaaattggtaacagtag 2507  T
Q  110 actatatttaacattgtattaattaatcactgatcagaataaatttccaaataaataatatgctttttgtgttcacatttactttaaaaacat-acctaa 208  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||    
T  2506 actatatttaacattgtattaattaatcactgatcagaataaatttccaaataaataatatgcttcttgtgttcacatttactttaaaaacatcacctaa 2407  T
Q  209 ggacatgcgaagatgatgacagatgaatttagatgtttcccacaatgcgcgccacaaattacct 272  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  2406 ggacatgcgaagatgatgacagatgaatttagatgtttcccacaattcgcgccacaaattacct 2343  T

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Target: scaffold0771; HSP #2
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 228 - 321
Target Start/End: Complemental strand, 2340 - 2247
Alignment:
Q  228 cagatgaatttagatgtttcccacaatgcgcgccacaaattaccttccatcaccattcaatgatattcaaataaatttgagtttaaatattaga 321  Q
    ||||||||||||||||||||||||||| |||| |||||||||||| |||||| |||||||||||||||||| ||||||||||||||||||||||    
T  2340 cagatgaatttagatgtttcccacaattcgcgtcacaaattacctaccatcaacattcaatgatattcaaagaaatttgagtttaaatattaga 2247  T

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Target: chr3 (Bit Score: 228; Significance: 1e-126; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 10 - 272
Target Start/End: Complemental strand, 13950466 - 13950203
Alignment:
Q  10 gccgactccatatgacaagaagcaaatcatattttaatcagcatctatgttcgataaatgttcgtccaattttcttatacaagtaaattggtaacaggag 109  Q
    ||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||| |||||||||||||| ||||||||||||||||||| ||    
T  13950466 gccgactccatatgacaagaagcaaatcatattttaatcagcatccattttcgataaatgtttgtccaattttcttagacaagtaaattggtaacagtag 13950367  T
Q  110 actatatttaacattgtattaattaatcactgatcagaataaatttccaaataaataatatgctttttgtgttcacatttactttaaaaacat-acctaa 208  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||    
T  13950366 actatatttaacattgtattaattaatcactgatcagaataaatttccaaataaataatatgcttcttgtgttcacatttactttaaaaacatcacctaa 13950267  T
Q  209 ggacatgcgaagatgatgacagatgaatttagatgtttcccacaatgcgcgccacaaattacct 272  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  13950266 ggacatgcgaagatgatgacagatgaatttagatgtttcccacaattcgcgccacaaattacct 13950203  T

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Target: chr3; HSP #2
Raw Score: 141; E-Value: 7e-74
Query Start/End: Original strand, 11 - 241
Target Start/End: Complemental strand, 20900912 - 20900680
Alignment:
Q  11 ccgactccatatgacaagaagcaaatcatattttaatcagcatctatgttcgataaatgttcgtccaattttcttatacaagtaaattgg-taacaggag 109  Q
    |||| ||||||||||||||| |||||| ||||||||||||||| ||||||| | ||||||| |||||||||||||| ||||||||||||| |||||| ||    
T  20900912 ccgagtccatatgacaagaaacaaatcttattttaatcagcatatatgttctaaaaatgtttgtccaattttcttagacaagtaaattgggtaacagtag 20900813  T
Q  110 actatatttaacattgtattaattaatcactgatcagaataaatttccaaataaataatatgctttttgtgttcacatttactttaaaaacat-acctaa 208  Q
    |||||||||||||||||||||||||| |||| | || |||||||||| ||||||||||||||||| |||||| ||||| |||||||||||||| ||||||    
T  20900812 actatatttaacattgtattaattaaacacttaacataataaatttcgaaataaataatatgcttcttgtgtccacatctactttaaaaacatcacctaa 20900713  T
Q  209 ggacatgcgaagatgatgacagatgaatttaga 241  Q
    |||||||| |||||||||||||||||| |||||    
T  20900712 ggacatgcaaagatgatgacagatgaacttaga 20900680  T

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Target: chr3; HSP #3
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 228 - 321
Target Start/End: Complemental strand, 13950200 - 13950107
Alignment:
Q  228 cagatgaatttagatgtttcccacaatgcgcgccacaaattaccttccatcaccattcaatgatattcaaataaatttgagtttaaatattaga 321  Q
    ||||||||||||||||||||||||||| |||| |||||||||||| |||||| |||||||||||||||||| ||||||||||||||||||||||    
T  13950200 cagatgaatttagatgtttcccacaattcgcgtcacaaattacctaccatcaacattcaatgatattcaaagaaatttgagtttaaatattaga 13950107  T

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Target: chr3; HSP #4
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 237 - 321
Target Start/End: Complemental strand, 20900423 - 20900339
Alignment:
Q  237 ttagatgtttcccacaatgcgcgccacaaattaccttccatcaccattcaatgatattcaaataaatttgagtttaaatattaga 321  Q
    |||||||||||||||||| ||||||||||||||||| |||||| |||||||||||||||||| ||||||||||||||||||||||    
T  20900423 ttagatgtttcccacaattcgcgccacaaattacctaccatcaacattcaatgatattcaaagaaatttgagtttaaatattaga 20900339  T

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