View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1706_low_27 (Length: 339)
Name: NF1706_low_27
Description: NF1706
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1706_low_27 |
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Alignment Details
Target: chr4 (Bit Score: 259; Significance: 1e-144; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 18 - 328
Target Start/End: Complemental strand, 55690449 - 55690137
Alignment:
| Q |
18 |
tgaatgttgtttgacaaacagaaaaaatgaatctccagacagacaaaggccttcaaaaatgagaggggataacttccatgagggaagcgactttcacagc |
117 |
Q |
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| T |
55690449 |
tgaatgttgtttgacaaacagaaaaaatgaatctccagacagacaaaggccttcaaaaatgagaggggataacttccatgagggaagcgactttcacagc |
55690350 |
T |
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| Q |
118 |
aattagnnnnnnnnntaatggcattccatatattttaacttgaaattcactcgatatagggaaaactgacttttgagcaacatagatatcaccagacaat |
217 |
Q |
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|||||| ||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
55690349 |
aattagaaaaaaatataatgacattccatatatttaaacttgaaattcactcgatatagggaaaactgacttttgagcaacatagatatcaccagacaat |
55690250 |
T |
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| Q |
218 |
gttttggtacctgcagttataaatg--cagagacacagtcttcccatgaagctatcatggaagagatttatttcttatagcttctttattatttccaaag |
315 |
Q |
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||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
55690249 |
gttttggtacctgcagttataaatgcacaaagacacagtcttcccatgaagctatcatggaagagatttatttcttatagcttctttattatttccaaag |
55690150 |
T |
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| Q |
316 |
ttaacacaggttc |
328 |
Q |
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||||||| ||||| |
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| T |
55690149 |
ttaacactggttc |
55690137 |
T |
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