View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1706_low_28 (Length: 330)
Name: NF1706_low_28
Description: NF1706
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1706_low_28 |
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Alignment Details
Target: chr8 (Bit Score: 295; Significance: 1e-166; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 295; E-Value: 1e-166
Query Start/End: Original strand, 16 - 322
Target Start/End: Original strand, 10441295 - 10441601
Alignment:
| Q |
16 |
attttgactataaaagaacaatttttacaaacaaaaagggaaaaggaatgaatgaaaatgaacctcaagagaagccttagcgagatgatgaatggtgggc |
115 |
Q |
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| T |
10441295 |
attttgactataaaagaacaatttttacaaacaaaaagggaaaaggaatgaatgaaaatgaacctcaagagaagccttagcgagatgatgaatggtgggc |
10441394 |
T |
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| Q |
116 |
catttaagcatccaacggttaaagtaagcaataacagtctgaacccttgtttgctgtaacataacctcagaaacccaaacaccataagctcttttttcaa |
215 |
Q |
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| T |
10441395 |
catttaagcatccaacggttaaaataagcaataacagtctgaacccttgtttgctgtaacataacctctgaaacccaaacaccataagctctcttttcaa |
10441494 |
T |
|
| Q |
216 |
cttcttcttcttcatgttcatcattcaacgttgttctccaaggaagaaccctttggttacgatcataccaatccaataaaaccgttctcagtttatgggt |
315 |
Q |
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| T |
10441495 |
cttcttcttcttcatgttcatcattcaacgttgttctccaaggaagaaccctttggttacgatcataccaatccaataaaaccgttctcagtttatgggt |
10441594 |
T |
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| Q |
316 |
ttcatct |
322 |
Q |
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||||||| |
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| T |
10441595 |
ttcatct |
10441601 |
T |
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