View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1706_low_3 (Length: 652)
Name: NF1706_low_3
Description: NF1706
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1706_low_3 |
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Alignment Details
Target: chr7 (Bit Score: 571; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 571; E-Value: 0
Query Start/End: Original strand, 14 - 637
Target Start/End: Complemental strand, 47137408 - 47136785
Alignment:
| Q |
14 |
cataggcaaaattatagttgagccactaaaatatctgaatcataaatggtgccaattcacggttcaaccggttgaatcgtctggtaagttcggtttttaa |
113 |
Q |
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| T |
47137408 |
catagggaaaattatagttgagccactaaaatatctgaatcataaatggtgccaattcacggttcaaccggttgaatcgtctggtaagttcggtttttaa |
47137309 |
T |
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| Q |
114 |
aaacattggtgtgaagtgtgagtggtatggtggtgactaaatttcatgtggattgctttgatcagggtctatgcaccggtgtggttattttgtggataag |
213 |
Q |
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| T |
47137308 |
aaacattggtgtgaagtgtgagtggtatggtggtgactaaatttcatgtggattgctttgatcagggtctatgcaccggtgtggttattttgtggataag |
47137209 |
T |
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| Q |
214 |
tggtggtaaaagctcgcatctactagtttttagtgaagatcnnnnnnnnatatatcttctacctcccatcatctttaatgccgggtaannnnnnngtacc |
313 |
Q |
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| T |
47137208 |
tggtggtaaaagctcgcatctactagtttttagtgaagatcttttttttatatatcttctacctcccatcatctttaatgccgggtaatttttttgtacc |
47137109 |
T |
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| Q |
314 |
atgctctatttatgtttgtttgattgaggaacacttgaaagtctttgttaaaatcttatgaaaatggtttatggtgtgttctgaatttgtttttagtata |
413 |
Q |
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| T |
47137108 |
atgctctatttatgtttgtttgattgaggaacacttgaaagtctttgttaaaatcttatgaaaatggtttatggtgtgttctgaatttgtttttagtata |
47137009 |
T |
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| Q |
414 |
tttcaatataaagtttatatgataggttgtggaaatagtttaactatgttctggtttcattatagaaatagcttatacataaatgtaatttatttcaggt |
513 |
Q |
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| T |
47137008 |
tttcaatataaagtttatatgataggttgtggaaatagtttaactatgttctggtttcattatagaaatagcttatacataactgtaatttatttcaggt |
47136909 |
T |
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| Q |
514 |
ttcaggttaaaaagaagcggttttttgttaacttcataactatcatgtcgtttggtgctgttggtacattaataagttgtagcatcataacttttggtat |
613 |
Q |
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| T |
47136908 |
ttcaggttaaaaagaagcggttttttgttaacttcataactatcatgtcgtttggtgctgttggtacattaataagttgtagcatcataacttttggtat |
47136809 |
T |
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| Q |
614 |
gtccttcctctttatatggattct |
637 |
Q |
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| T |
47136808 |
gtccttcctctttatatggattct |
47136785 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 497 - 587
Target Start/End: Original strand, 36489261 - 36489351
Alignment:
| Q |
497 |
tgtaatttatttcaggtttcaggttaaaaagaagcggttttttgttaacttcataactatcatgtcgtttggtgctgttggtacattaata |
587 |
Q |
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|||||| |||||||||||||| || || || |||| ||||||||| |||||||| ||||||| || ||||| ||| |||| ||||||||| |
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| T |
36489261 |
tgtaatatatttcaggtttcaagtaaagaaaaagcagttttttgtcaacttcatgactatcacatcatttggagctattggcacattaata |
36489351 |
T |
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