View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1706_low_31 (Length: 319)
Name: NF1706_low_31
Description: NF1706
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1706_low_31 |
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Alignment Details
Target: chr4 (Bit Score: 288; Significance: 1e-161; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 288; E-Value: 1e-161
Query Start/End: Original strand, 1 - 296
Target Start/End: Complemental strand, 42045681 - 42045386
Alignment:
| Q |
1 |
caaaccagaactagaattaattcaatataacacaccccaccaataccatgatgctaattttctccaacttccacaccttgaaagtccaaaaattactcaa |
100 |
Q |
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| T |
42045681 |
caaaccagaactagaattaattcaatataacacaccccaccaataccatgatgctaattttctccaacttccacaccttgaaagtccaaaaattactcaa |
42045582 |
T |
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| Q |
101 |
tctattatcccttataatcatcatgctcatgcaaacaataacaatattgcacttactcaacagatgcaatatttgcagtaccatcaacaaaatcttcact |
200 |
Q |
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| T |
42045581 |
tctattatcccttataatcatcatgctcatgcaaacaataacaatattgcacttactcaacagatgcaatatttgcagtaccatcaacaaaatcttcact |
42045482 |
T |
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| Q |
201 |
cactttatggtggtaacaacagtactggcaatgatgaacaagttactgattggagagtgcttgacaagtttgttgcttctcaactaagtcatgaag |
296 |
Q |
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| T |
42045481 |
cactttatggtggtaacagcagtactggcaatgatgaacaagttactgattggagagtgcttgacaagtttgttgcttctcagctaagtcatgaag |
42045386 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 231 - 291
Target Start/End: Original strand, 12852831 - 12852891
Alignment:
| Q |
231 |
atgatgaacaagttactgattggagagtgcttgacaagtttgttgcttctcaactaagtca |
291 |
Q |
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| T |
12852831 |
atgatgatcaagttactgattggagagttcttgacaagtttgttgcttcacaacttagtca |
12852891 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 241 - 296
Target Start/End: Original strand, 8452248 - 8452303
Alignment:
| Q |
241 |
agttactgattggagagtgcttgacaagtttgttgcttctcaactaagtcatgaag |
296 |
Q |
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| T |
8452248 |
agttactgattggagagctcttgataagtttgtggcttctcaactgagtcacgaag |
8452303 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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