View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1706_low_33 (Length: 306)

Name: NF1706_low_33
Description: NF1706
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1706_low_33
NF1706_low_33
[»] chr8 (26 HSPs)
chr8 (131-290)||(43551704-43551861)
chr8 (11-77)||(38908786-38908853)
chr8 (9-77)||(3442444-3442510)
chr8 (10-79)||(2796997-2797066)
chr8 (1-77)||(42797759-42797834)
chr8 (20-78)||(8566497-8566554)
chr8 (20-77)||(17790188-17790244)
chr8 (9-70)||(36649797-36649857)
chr8 (20-72)||(39416274-39416327)
chr8 (11-79)||(14117420-14117487)
chr8 (11-79)||(32231802-32231869)
chr8 (11-79)||(41726479-41726546)
chr8 (20-79)||(886539-886597)
chr8 (3-46)||(8418376-8418419)
chr8 (11-78)||(36012054-36012120)
chr8 (3-46)||(44225995-44226038)
chr8 (10-72)||(2875167-2875228)
chr8 (12-70)||(27875225-27875283)
chr8 (12-70)||(28015403-28015461)
chr8 (3-37)||(28802766-28802800)
chr8 (9-79)||(33743733-33743803)
chr8 (10-79)||(38201472-38201539)
chr8 (9-79)||(42412463-42412532)
chr8 (9-46)||(40316657-40316694)
chr8 (11-79)||(5392006-5392074)
chr8 (21-72)||(43844974-43845026)
[»] chr4 (24 HSPs)
chr4 (13-78)||(29136873-29136937)
chr4 (3-79)||(55360422-55360499)
chr4 (3-72)||(22872462-22872530)
chr4 (11-79)||(28279795-28279862)
chr4 (3-77)||(38160226-38160301)
chr4 (20-67)||(40021039-40021086)
chr4 (8-79)||(49812187-49812257)
chr4 (20-78)||(11469816-11469873)
chr4 (20-78)||(11521588-11521645)
chr4 (23-77)||(22020604-22020658)
chr4 (9-77)||(5499509-5499577)
chr4 (9-77)||(17237003-17237070)
chr4 (11-78)||(28330751-28330819)
chr4 (11-79)||(35998199-35998267)
chr4 (9-77)||(41436441-41436508)
chr4 (11-79)||(44633114-44633182)
chr4 (11-79)||(49218864-49218932)
chr4 (9-72)||(47846863-47846926)
chr4 (9-78)||(2906644-2906711)
chr4 (3-77)||(32323624-32323697)
chr4 (9-79)||(47787927-47787996)
chr4 (9-78)||(49448798-49448868)
chr4 (41-78)||(4727475-4727512)
chr4 (11-70)||(3505687-3505747)
[»] chr7 (11 HSPs)
chr7 (10-72)||(3781259-3781320)
chr7 (3-70)||(30462627-30462693)
chr7 (10-78)||(1099167-1099233)
chr7 (11-79)||(39143929-39143996)
chr7 (11-78)||(39343753-39343819)
chr7 (9-79)||(40023807-40023875)
chr7 (9-79)||(8149917-8149986)
chr7 (20-78)||(10355826-10355883)
chr7 (11-77)||(30459022-30459087)
chr7 (9-79)||(31581523-31581592)
chr7 (9-77)||(37157131-37157197)
[»] chr1 (34 HSPs)
chr1 (9-78)||(30903308-30903376)
chr1 (9-77)||(46139839-46139906)
chr1 (9-77)||(15290450-15290520)
chr1 (3-77)||(17342788-17342861)
chr1 (3-79)||(3718924-3718998)
chr1 (9-78)||(26583687-26583755)
chr1 (9-46)||(29678816-29678853)
chr1 (9-46)||(44657335-44657372)
chr1 (12-79)||(1859465-1859530)
chr1 (11-79)||(4466237-4466304)
chr1 (3-79)||(40061767-40061842)
chr1 (3-79)||(2246352-2246430)
chr1 (20-70)||(16956351-16956399)
chr1 (11-46)||(20988565-20988600)
chr1 (20-79)||(26760115-26760173)
chr1 (20-79)||(26924361-26924419)
chr1 (20-79)||(28706716-28706775)
chr1 (3-77)||(33149234-33149306)
chr1 (9-80)||(34877171-34877240)
chr1 (10-72)||(47480024-47480084)
chr1 (11-79)||(52146738-52146810)
chr1 (11-70)||(52382469-52382528)
chr1 (11-77)||(24131483-24131548)
chr1 (11-77)||(37925329-37925394)
chr1 (4-46)||(40019749-40019791)
chr1 (9-71)||(42309397-42309459)
chr1 (9-78)||(29225712-29225780)
chr1 (9-70)||(41968204-41968264)
chr1 (11-78)||(7075486-7075551)
chr1 (20-60)||(8903391-8903431)
chr1 (11-79)||(11425952-11426019)
chr1 (11-79)||(16040035-16040102)
chr1 (11-79)||(18186289-18186355)
chr1 (10-46)||(35622861-35622897)
[»] chr2 (25 HSPs)
chr2 (11-79)||(24451741-24451809)
chr2 (3-78)||(10069659-10069733)
chr2 (9-70)||(44284399-44284459)
chr2 (10-78)||(18181294-18181362)
chr2 (9-72)||(5007622-5007684)
chr2 (4-79)||(6213925-6214000)
chr2 (11-78)||(13222027-13222093)
chr2 (9-79)||(3123601-3123670)
chr2 (3-77)||(33602303-33602379)
chr2 (1-77)||(44736679-44736754)
chr2 (11-46)||(1908576-1908611)
chr2 (11-46)||(2048282-2048317)
chr2 (9-79)||(2756633-2756701)
chr2 (11-78)||(7931578-7931644)
chr2 (9-79)||(9936975-9937043)
chr2 (11-78)||(24356070-24356136)
chr2 (4-79)||(31546093-31546167)
chr2 (11-77)||(37529153-37529218)
chr2 (9-79)||(38392830-38392899)
chr2 (20-77)||(43950530-43950585)
chr2 (3-79)||(45464291-45464364)
chr2 (9-77)||(6075456-6075525)
chr2 (20-77)||(19009805-19009862)
chr2 (3-79)||(31592509-31592583)
chr2 (9-78)||(4794529-4794600)
[»] scaffold0067 (1 HSPs)
scaffold0067 (13-79)||(1845-1910)
[»] scaffold0007 (2 HSPs)
scaffold0007 (20-78)||(157986-158043)
scaffold0007 (11-79)||(230215-230281)
[»] chr3 (14 HSPs)
chr3 (10-72)||(44219114-44219175)
chr3 (9-78)||(37041953-37042024)
chr3 (20-79)||(53754155-53754214)
chr3 (4-70)||(45746332-45746398)
chr3 (3-79)||(3862246-3862320)
chr3 (1-46)||(17777066-17777111)
chr3 (1-46)||(19078367-19078412)
chr3 (20-72)||(42995278-42995328)
chr3 (11-78)||(32977872-32977938)
chr3 (11-78)||(53050985-53051051)
chr3 (9-78)||(2868533-2868601)
chr3 (42-78)||(12744772-12744808)
chr3 (11-79)||(21585492-21585559)
chr3 (3-79)||(32023175-32023250)
[»] chr5 (25 HSPs)
chr5 (3-79)||(13422427-13422501)
chr5 (11-79)||(16884014-16884083)
chr5 (9-70)||(35967271-35967331)
chr5 (9-70)||(6173061-6173123)
chr5 (11-77)||(42818864-42818929)
chr5 (10-79)||(14184130-14184199)
chr5 (3-76)||(22982908-22982980)
chr5 (3-72)||(35585691-35585760)
chr5 (11-52)||(36006975-36007016)
chr5 (3-79)||(39183702-39183776)
chr5 (20-78)||(5072911-5072966)
chr5 (20-72)||(33498588-33498639)
chr5 (3-50)||(35666870-35666918)
chr5 (9-77)||(41184077-41184144)
chr5 (11-78)||(4194599-4194665)
chr5 (11-70)||(8369779-8369838)
chr5 (9-79)||(4412341-4412410)
chr5 (20-78)||(16926395-16926453)
chr5 (20-50)||(34534908-34534938)
chr5 (20-77)||(24534562-24534618)
chr5 (9-49)||(15254752-15254792)
chr5 (9-79)||(15814621-15814688)
chr5 (21-72)||(35465058-35465110)
chr5 (11-79)||(39008087-39008154)
chr5 (9-72)||(39212632-39212700)
[»] scaffold0654 (1 HSPs)
scaffold0654 (3-78)||(2732-2805)
[»] scaffold0578 (1 HSPs)
scaffold0578 (9-72)||(3994-4056)
[»] chr6 (12 HSPs)
chr6 (11-77)||(34803789-34803854)
chr6 (9-46)||(2362346-2362383)
chr6 (3-46)||(14306315-14306358)
chr6 (3-46)||(14312722-14312765)
chr6 (10-77)||(31723454-31723520)
chr6 (9-79)||(6787253-6787322)
chr6 (21-78)||(7844296-7844351)
chr6 (20-72)||(25398887-25398940)
chr6 (11-79)||(31265738-31265804)
chr6 (9-78)||(33109332-33109400)
chr6 (9-77)||(2310368-2310435)
chr6 (11-79)||(3604682-3604749)
[»] scaffold0685 (1 HSPs)
scaffold0685 (11-70)||(6482-6541)


Alignment Details
Target: chr8 (Bit Score: 72; Significance: 9e-33; HSPs: 26)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 131 - 290
Target Start/End: Original strand, 43551704 - 43551861
Alignment:
Q  131 tactcacttagttggattgatcatgtccgctaaactatgagacataagtaacattaatggatccaaactcattgacatnnnnnnngtatgtgttttaggt 230  Q
    ||||||||||| |  || |||||||||||||||||||||||||||||||||||||  | ||||||||||||||| |||       |||||||||||| ||    
T  43551704 tactcacttagctcaatggatcatgtccgctaaactatgagacataagtaacatt--tcgatccaaactcattgccataggaaaagtatgtgttttacgt 43551801  T
Q  231 tgtagactatgaagcatatgcattcttcatattaggtgttctgttgtttgacacgcatat 290  Q
    |||||||||||||| | ||||| |||| | |||||||||||||||||||| || ||||||    
T  43551802 tgtagactatgaagtacatgcactctttaaattaggtgttctgttgtttgtcatgcatat 43551861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 11 - 77
Target Start/End: Complemental strand, 38908853 - 38908786
Alignment:
Q  11 tgaaaatattattaattagagttataattgaaaaaa-taataattgatattgcattgaaaagttaaat 77  Q
    ||||| || ||||||||||||||||||||||||||| ||||||||||||||| |||||||||| ||||    
T  38908853 tgaaagtagtattaattagagttataattgaaaaaaataataattgatattgtattgaaaagtgaaat 38908786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 9 - 77
Target Start/End: Complemental strand, 3442510 - 3442444
Alignment:
Q  9 gatgaaaatattattaattagagttataattgaaaaaataataattgatattgcattgaaaagttaaat 77  Q
    |||||||||| ||||||||||||||||||||||||||  ||||||| |||||| |||||||||| ||||    
T  3442510 gatgaaaatagtattaattagagttataattgaaaaa--aataattaatattgaattgaaaagtaaaat 3442444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 10 - 79
Target Start/End: Complemental strand, 2797066 - 2796997
Alignment:
Q  10 atgaaaatattattaattagagttataattgaaaaaataataattgatattgcattgaaaagttaaatga 79  Q
    |||||| || |||||||||||||||||||||  |||| ||||||| |||||| |||||||||| ||||||    
T  2797066 atgaaagtaatattaattagagttataattggtaaaaaaataattaatattgtattgaaaagtgaaatga 2796997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 1 - 77
Target Start/End: Original strand, 42797759 - 42797834
Alignment:
Q  1 tcgagagagatgaaaatattattaattagagttataattgaaaaaataataattgatattgcattgaaaagttaaat 77  Q
    ||||||| ||||| | || | ||||||||||||||||||||||||| ||||||| |||||| |||||||||| ||||    
T  42797759 tcgagagcgatgatagtagttttaattagagttataattgaaaaaa-aataattaatattgtattgaaaagtgaaat 42797834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 20 - 78
Target Start/End: Original strand, 8566497 - 8566554
Alignment:
Q  20 tattaattagagttataattgaaaaaataataattgatattgcattgaaaagttaaatg 78  Q
    |||||||||| |||||||||||||||| ||||||| |||||| |||||||||| |||||    
T  8566497 tattaattagtgttataattgaaaaaa-aataattaatattgtattgaaaagtgaaatg 8566554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 20 - 77
Target Start/End: Original strand, 17790188 - 17790244
Alignment:
Q  20 tattaattagagttataattgaaaaaataataattgatattgcattgaaaagttaaat 77  Q
    |||||||||| |||||||||||||||| ||||||| |||||| |||||||||| ||||    
T  17790188 tattaattagtgttataattgaaaaaa-aataattaatattgtattgaaaagtgaaat 17790244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 9 - 70
Target Start/End: Original strand, 36649797 - 36649857
Alignment:
Q  9 gatgaaaatattattaattagagttataattgaaaaaataataattgatattgcattgaaaa 70  Q
    |||||||||  ||| ||||||||||||||||| ||||||||||||| |||||| ||||||||    
T  36649797 gatgaaaatgatatcaattagagttataattg-aaaaataataattaatattgtattgaaaa 36649857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 20 - 72
Target Start/End: Complemental strand, 39416327 - 39416274
Alignment:
Q  20 tattaattagagttataattgaaaaaataa-taattgatattgcattgaaaagt 72  Q
    ||||||||||||||||||||||||||| || ||| |||||||| ||||||||||    
T  39416327 tattaattagagttataattgaaaaaaaaagtaactgatattgtattgaaaagt 39416274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 11 - 79
Target Start/End: Complemental strand, 14117487 - 14117420
Alignment:
Q  11 tgaaaatattattaattagagttataattgaaaaaataataattgatattgcattgaaaagttaaatga 79  Q
    ||||| || ||||||||||||||||||||||||||| || |||| || ||| |||||||||| ||||||    
T  14117487 tgaaagtaatattaattagagttataattgaaaaaa-aaaaattaatgttgtattgaaaagtgaaatga 14117420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 11 - 79
Target Start/End: Original strand, 32231802 - 32231869
Alignment:
Q  11 tgaaaatattattaattagagttataattgaaaaaataataattgatattgcattgaaaagttaaatga 79  Q
    ||||| ||||||||||||| |||||||||| ||||| | ||||| |||||| |||||||||| ||||||    
T  32231802 tgaaagtattattaattagtgttataattggaaaaa-agtaattaatattgtattgaaaagtgaaatga 32231869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 11 - 79
Target Start/End: Complemental strand, 41726546 - 41726479
Alignment:
Q  11 tgaaaatattattaattagagttataattgaaaaaataataattgatattgcattgaaaagttaaatga 79  Q
    ||||| || ||||||||| ||||||||||||||||| | ||||| |||||| |||||||||| ||||||    
T  41726546 tgaaattagtattaattacagttataattgaaaaaa-agtaattaatattgtattgaaaagtgaaatga 41726479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 20 - 79
Target Start/End: Original strand, 886539 - 886597
Alignment:
Q  20 tattaattagagttataattgaaaaaataataattgatattgcattgaaaagttaaatga 79  Q
    |||||||||| |||||||||||||||| | ||||| |||||| |||||||||| ||||||    
T  886539 tattaattagtgttataattgaaaaaa-agtaattaatattgtattgaaaagtgaaatga 886597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 3 - 46
Target Start/End: Original strand, 8418376 - 8418419
Alignment:
Q  3 gagagagatgaaaatattattaattagagttataattgaaaaaa 46  Q
    ||||| ||||||| || |||||||||||||||||||||||||||    
T  8418376 gagagtgatgaaagtagtattaattagagttataattgaaaaaa 8418419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 11 - 78
Target Start/End: Original strand, 36012054 - 36012120
Alignment:
Q  11 tgaaaatattattaattagagttataattgaaaaaataataattgatattgcattgaaaagttaaatg 78  Q
    ||||| || |||||||||||||||||| || ||||| ||||||| |||||| |||||||||| |||||    
T  36012054 tgaaagtagtattaattagagttataagtggaaaaa-aataattaatattgtattgaaaagtgaaatg 36012120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 3 - 46
Target Start/End: Original strand, 44225995 - 44226038
Alignment:
Q  3 gagagagatgaaaatattattaattagagttataattgaaaaaa 46  Q
    ||||| |||||||||| |||||||||||||||||||| ||||||    
T  44225995 gagagcgatgaaaataatattaattagagttataattaaaaaaa 44226038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 10 - 72
Target Start/End: Original strand, 2875167 - 2875228
Alignment:
Q  10 atgaaaatattattaattagagttataattgaaaaaataataattgatattgcattgaaaagt 72  Q
    |||||| || |||||||||||||||||||||  |||| ||||||| |||||| ||||||||||    
T  2875167 atgaaagtagtattaattagagttataattggtaaaa-aataattcatattgtattgaaaagt 2875228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 12 - 70
Target Start/End: Original strand, 27875225 - 27875283
Alignment:
Q  12 gaaaatattattaattagagttataattgaaaaaataataattgatattgcattgaaaa 70  Q
    ||||||| ||||||||| |||||||||| |||||| | ||||  |||||||||||||||    
T  27875225 gaaaatagtattaattaaagttataattaaaaaaaaagtaatcaatattgcattgaaaa 27875283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 12 - 70
Target Start/End: Original strand, 28015403 - 28015461
Alignment:
Q  12 gaaaatattattaattagagttataattgaaaaaataataattgatattgcattgaaaa 70  Q
    ||||||| ||||||||| |||||||||| |||||| | ||||  |||||||||||||||    
T  28015403 gaaaatagtattaattaaagttataattaaaaaaaaagtaatcaatattgcattgaaaa 28015461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 3 - 37
Target Start/End: Complemental strand, 28802800 - 28802766
Alignment:
Q  3 gagagagatgaaaatattattaattagagttataa 37  Q
    ||||| |||||||||||||||||||||||||||||    
T  28802800 gagagtgatgaaaatattattaattagagttataa 28802766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 9 - 79
Target Start/End: Complemental strand, 33743803 - 33743733
Alignment:
Q  9 gatgaaaatattattaattagagttataattgaaaaaataataattgatattgcattgaaaagttaaatga 79  Q
    ||||||| || |||||||||| | || ||| | ||||| ||||||| |||||| |||||||||||||||||    
T  33743803 gatgaaagtaatattaattagtggtaaaataggaaaaaaaataattaatattgtattgaaaagttaaatga 33743733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 10 - 79
Target Start/End: Original strand, 38201472 - 38201539
Alignment:
Q  10 atgaaaatattattaattagagttataattgaaaaaataataattgatattgcattgaaaagttaaatga 79  Q
    |||||| || |||||||||||||||||| |||||||  |||||||  ||||| |||||||||| ||||||    
T  38201472 atgaaagtaatattaattagagttataaatgaaaaa--aataattattattgtattgaaaagtgaaatga 38201539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 9 - 79
Target Start/End: Original strand, 42412463 - 42412532
Alignment:
Q  9 gatgaaaatattattaattagagttataattgaaaaaataataattgatattgcattgaaaagttaaatga 79  Q
    ||||||| || |||||||||||| |||||||| ||||| | ||||| |||||||||| |||||| ||||||    
T  42412463 gatgaaagtagtattaattagagctataattggaaaaa-agtaattaatattgcattaaaaagtgaaatga 42412532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 9 - 46
Target Start/End: Original strand, 40316657 - 40316694
Alignment:
Q  9 gatgaaaatattattaattagagttataattgaaaaaa 46  Q
    ||||| |||| |||||||||||||||||||||||||||    
T  40316657 gatgagaataatattaattagagttataattgaaaaaa 40316694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 11 - 79
Target Start/End: Complemental strand, 5392074 - 5392006
Alignment:
Q  11 tgaaaatattattaattagagttataattgaaaaaataataattgatattgcattgaaaagttaaatga 79  Q
    ||||| || ||||||||||||||||||  | ||||| | ||||| |||||| |||||||||| ||||||    
T  5392074 tgaaagtagtattaattagagttataaagggaaaaaaagtaattaatattgtattgaaaagtgaaatga 5392006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 21 - 72
Target Start/End: Original strand, 43844974 - 43845026
Alignment:
Q  21 attaattagagttataatt-gaaaaaataataattgatattgcattgaaaagt 72  Q
    ||||||||||||||||||| ||||||| | ||||| |||||| ||||||||||    
T  43844974 attaattagagttataattggaaaaaaaagtaattaatattgtattgaaaagt 43845026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 46; Significance: 3e-17; HSPs: 24)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 13 - 78
Target Start/End: Original strand, 29136873 - 29136937
Alignment:
Q  13 aaaatattattaattagagttataattgaaaaaataataattgatattgcattgaaaagttaaatg 78  Q
    |||||||||||||||||||||||||||||||||| | ||||| ||||||||||||||||| |||||    
T  29136873 aaaatattattaattagagttataattgaaaaaa-agtaattaatattgcattgaaaagtaaaatg 29136937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 3 - 79
Target Start/End: Original strand, 55360422 - 55360499
Alignment:
Q  3 gagagagatgaaaatattattaattagagttataattgaaaaaataa-taattgatattgcattgaaaagttaaatga 79  Q
    ||||| ||||||| || ||||||||||||||||||||||||||| || ||||| |||||| |||||||||| ||||||    
T  55360422 gagagtgatgaaagtaatattaattagagttataattgaaaaaaaaagtaattaatattgtattgaaaagtgaaatga 55360499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 3 - 72
Target Start/End: Original strand, 22872462 - 22872530
Alignment:
Q  3 gagagagatgaaaatattattaattagagttataattgaaaaaataataattgatattgcattgaaaagt 72  Q
    ||||| ||||||| || ||||||||||||||||||||| ||||| | ||||| |||||||||||||||||    
T  22872462 gagagtgatgaaagtaatattaattagagttataattggaaaaa-agtaattaatattgcattgaaaagt 22872530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 11 - 79
Target Start/End: Complemental strand, 28279862 - 28279795
Alignment:
Q  11 tgaaaatattattaattagagttataattgaaaaaataataattgatattgcattgaaaagttaaatga 79  Q
    |||||||| ||||||||||||||||||||||||||| | ||||| || ||| |||||||||| ||||||    
T  28279862 tgaaaatagtattaattagagttataattgaaaaaa-agtaattaatgttgtattgaaaagtgaaatga 28279795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 3 - 77
Target Start/End: Original strand, 38160226 - 38160301
Alignment:
Q  3 gagagagatgaaaatattattaattagagttataattg-aaaaaataataattgatattgcattgaaaagttaaat 77  Q
    ||||| ||| ||| || ||||||||||||||||||||| |||||| ||||||| |||||| |||||||||| ||||    
T  38160226 gagagtgataaaagtaatattaattagagttataattgaaaaaaaaaataattaatattgtattgaaaagtgaaat 38160301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 20 - 67
Target Start/End: Original strand, 40021039 - 40021086
Alignment:
Q  20 tattaattagagttataattgaaaaaataataattgatattgcattga 67  Q
    ||||||||||||||||||||||||||| | ||||| ||||||||||||    
T  40021039 tattaattagagttataattgaaaaaaaagtaattaatattgcattga 40021086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 8 - 79
Target Start/End: Complemental strand, 49812257 - 49812187
Alignment:
Q  8 agatgaaaatattattaattagagttataattgaaaaaataataattgatattgcattgaaaagttaaatga 79  Q
    ||||||||||| ||||||||||||||||||  | ||||| ||||||| |||||| |||||||||| ||||||    
T  49812257 agatgaaaatagtattaattagagttataaagggaaaaa-aataattaatattgtattgaaaagtgaaatga 49812187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 20 - 78
Target Start/End: Complemental strand, 11469873 - 11469816
Alignment:
Q  20 tattaattagagttataattgaaaaaataataattgatattgcattgaaaagttaaatg 78  Q
    ||||||||||||||||||||||| ||| ||||||| ||||| ||||||||||| |||||    
T  11469873 tattaattagagttataattgaagaaa-aataattaatattacattgaaaagtgaaatg 11469816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 20 - 78
Target Start/End: Original strand, 11521588 - 11521645
Alignment:
Q  20 tattaattagagttataattgaaaaaataataattgatattgcattgaaaagttaaatg 78  Q
    ||||||||||||||||||||||| ||| ||||||| ||||| ||||||||||| |||||    
T  11521588 tattaattagagttataattgaagaaa-aataattaatattacattgaaaagtgaaatg 11521645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 23 - 77
Target Start/End: Original strand, 22020604 - 22020658
Alignment:
Q  23 taattagagttataattgaaaaaataataattgatattgcattgaaaagttaaat 77  Q
    |||||||||||||||||| ||||| ||||||| |||||| |||||||||| ||||    
T  22020604 taattagagttataattggaaaaaaaataattaatattgtattgaaaagtaaaat 22020658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 9 - 77
Target Start/End: Original strand, 5499509 - 5499577
Alignment:
Q  9 gatgaaaatattattaattagagttataattgaaaaaataataattgatattgcattgaaaagttaaat 77  Q
    ||||||| || ||||||||||||| ||||||||||||| | |||||  ||||| |||||||||| ||||    
T  5499509 gatgaaagtaatattaattagagtcataattgaaaaaaaagtaattattattgtattgaaaagtgaaat 5499577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 9 - 77
Target Start/End: Complemental strand, 17237070 - 17237003
Alignment:
Q  9 gatgaaaatattattaattagagttataattgaaaaaataataattgatattgcattgaaaagttaaat 77  Q
    ||||||| || ||||||||||||||||||||||||||| | ||||| |||||  |||||||||| ||||    
T  17237070 gatgaaagtagtattaattagagttataattgaaaaaa-attaattaatattatattgaaaagtgaaat 17237003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 11 - 78
Target Start/End: Complemental strand, 28330819 - 28330751
Alignment:
Q  11 tgaaaatattattaattagagttataattgaaaaaataa-taattgatattgcattgaaaagttaaatg 78  Q
    ||||| || |||||||||| |||||||||||||||| || ||||| |||||| |||||||||| |||||    
T  28330819 tgaaagtaatattaattagtgttataattgaaaaaaaaagtaattaatattgtattgaaaagtgaaatg 28330751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 11 - 79
Target Start/End: Original strand, 35998199 - 35998267
Alignment:
Q  11 tgaaaatattattaattagagttataattgaaaaaataataattgatattgcattgaaaagttaaatga 79  Q
    ||||| || ||||||||||||||||||  | ||||||||||||| |||||| || ||||||| ||||||    
T  35998199 tgaaagtagtattaattagagttataaagggaaaaataataattaatattgtatcgaaaagtgaaatga 35998267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 9 - 77
Target Start/End: Complemental strand, 41436508 - 41436441
Alignment:
Q  9 gatgaaaatattattaattagagttataattgaaaaaataataattgatattgcattgaaaagttaaat 77  Q
    ||||||| || |||||||||||||||||||| | |||| ||||||| |||||| |||||||||| ||||    
T  41436508 gatgaaagtagtattaattagagttataatt-agaaaaaaataattaatattgtattgaaaagtgaaat 41436441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 11 - 79
Target Start/End: Complemental strand, 44633182 - 44633114
Alignment:
Q  11 tgaaaatattattaattagagttataattgaaaaaataataattgatattgcattgaaaagttaaatga 79  Q
    ||||| || ||||||||||||||||||||| ||||| | ||||| || ||| |||||||||| ||||||    
T  44633182 tgaaagtagtattaattagagttataattggaaaaaaagtaattaatgttgtattgaaaagtgaaatga 44633114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 11 - 79
Target Start/End: Original strand, 49218864 - 49218932
Alignment:
Q  11 tgaaaatattattaattagagttataattgaaaaaataataattgatattgcattgaaaagttaaatga 79  Q
    ||||| || |||||||||  |||||||||||||||| | ||||| |||||| |||||||||| ||||||    
T  49218864 tgaaagtaatattaattaatgttataattgaaaaaaaagtaattaatattgtattgaaaagtgaaatga 49218932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 9 - 72
Target Start/End: Complemental strand, 47846926 - 47846863
Alignment:
Q  9 gatgaaaatattattaattagagttataattgaaaaaataataattgatattgcattgaaaagt 72  Q
    ||||||| || ||||||||||||||||||||  ||||| ||| ||| |||||| ||||||||||    
T  47846926 gatgaaagtagtattaattagagttataattagaaaaagaattattaatattgtattgaaaagt 47846863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 9 - 78
Target Start/End: Complemental strand, 2906711 - 2906644
Alignment:
Q  9 gatgaaaatattattaattagagttataattgaaaaaataataattgatattgcattgaaaagttaaatg 78  Q
    |||||||||| ||||||||||||||||| ||||||||  ||||||| || ||  |||||||||| |||||    
T  2906711 gatgaaaataatattaattagagttatatttgaaaaa--aataattaatgttatattgaaaagtgaaatg 2906644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 3 - 77
Target Start/End: Complemental strand, 32323697 - 32323624
Alignment:
Q  3 gagagagatgaaaatattattaattagagttataattgaaaaaataataattgatattgcattgaaaagttaaat 77  Q
    ||||| ||| |||||| |||| |||  |||||||||| |||||||||||||| |||||| |||||||||| ||||    
T  32323697 gagagtgattaaaataatattcattgaagttataatt-aaaaaataataattaatattgtattgaaaagtgaaat 32323624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 9 - 79
Target Start/End: Original strand, 47787927 - 47787996
Alignment:
Q  9 gatgaaaatattattaattagagttataattgaaaaaataataattgatattgcattgaaaagttaaatga 79  Q
    ||||||| || ||||||||||||||||||  ||||||| | ||||| |||||| |||||||||||| ||||    
T  47787927 gatgaaagtagtattaattagagttataaaagaaaaaa-agtaattaatattgtattgaaaagttatatga 47787996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 9 - 78
Target Start/End: Complemental strand, 49448868 - 49448798
Alignment:
Q  9 gatgaaaatattattaattagagttataattgaaaaaataa-taattgatattgcattgaaaagttaaatg 78  Q
    ||||||| || |||||||||||||||||||| |||||| || ||||| |||||  |||||||||| |||||    
T  49448868 gatgaaagtagtattaattagagttataattaaaaaaaaaagtaattaatattatattgaaaagtgaaatg 49448798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 41 - 78
Target Start/End: Complemental strand, 4727512 - 4727475
Alignment:
Q  41 aaaaaataataattgatattgcattgaaaagttaaatg 78  Q
    |||||||||||||| ||||||||||||||||| |||||    
T  4727512 aaaaaataataattaatattgcattgaaaagtgaaatg 4727475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 11 - 70
Target Start/End: Complemental strand, 3505747 - 3505687
Alignment:
Q  11 tgaaaatattattaattagagttataattgaaaaaataa-taattgatattgcattgaaaa 70  Q
    ||||| ||| |||||||||||||||||||||||||| || | ||| |||||| ||||||||    
T  3505747 tgaaagtatgattaattagagttataattgaaaaaaaaagtcattaatattgtattgaaaa 3505687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 11)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 10 - 72
Target Start/End: Original strand, 3781259 - 3781320
Alignment:
Q  10 atgaaaatattattaattagagttataattgaaaaaataataattgatattgcattgaaaagt 72  Q
    |||||||||||||||||||||||||||||||||| || | ||||| |||||||||||||||||    
T  3781259 atgaaaatattattaattagagttataattgaaacaa-agtaattaatattgcattgaaaagt 3781320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 3 - 70
Target Start/End: Complemental strand, 30462693 - 30462627
Alignment:
Q  3 gagagagatgaaaatattattaattagagttataattgaaaaaataataattgatattgcattgaaaa 70  Q
    ||||| ||||||| || ||||||||||||||||||||||||||| ||||||| || ||| ||||||||    
T  30462693 gagagtgatgaaattagtattaattagagttataattgaaaaaa-aataattaatgttgtattgaaaa 30462627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 10 - 78
Target Start/End: Original strand, 1099167 - 1099233
Alignment:
Q  10 atgaaaatattattaattagagttataattgaaaaaataataattgatattgcattgaaaagttaaatg 78  Q
    ||||||||| ||||||||| ||||||||||||||||  ||||||| | ||| ||||||||||| |||||    
T  1099167 atgaaaataatattaattaaagttataattgaaaaa--aataattaagattacattgaaaagtgaaatg 1099233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 11 - 79
Target Start/End: Original strand, 39143929 - 39143996
Alignment:
Q  11 tgaaaatattattaattagagttataattgaaaaaataataattgatattgcattgaaaagttaaatga 79  Q
    |||||||| ||||||||| | ||||||||| ||||| || |||| |||||| |||||||||||||||||    
T  39143929 tgaaaataatattaattataattataattggaaaaaaaa-aattaatattgtattgaaaagttaaatga 39143996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 11 - 78
Target Start/End: Original strand, 39343753 - 39343819
Alignment:
Q  11 tgaaaatattattaattagagttataattgaaaaaataataattgatattgcattgaaaagttaaatg 78  Q
    |||||||| ||||||||||||||||||||| |||||   ||||| |||||| |||||||||| |||||    
T  39343753 tgaaaatagtattaattagagttataattg-aaaaagggtaattaatattgtattgaaaagtgaaatg 39343819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 9 - 79
Target Start/End: Original strand, 40023807 - 40023875
Alignment:
Q  9 gatgaaaatattattaattagagttataattgaaaaaataataattgatattgcattgaaaagttaaatga 79  Q
    ||||||| || ||||||||||||||||||||  ||||| | ||||| |||||| |||||||||| ||||||    
T  40023807 gatgaaattactattaattagagttataatt--aaaaaaagtaattaatattgtattgaaaagtgaaatga 40023875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 9 - 79
Target Start/End: Complemental strand, 8149986 - 8149917
Alignment:
Q  9 gatgaaaatattattaattagagttataattgaaaaaataataattgatattgcattgaaaagttaaatga 79  Q
    ||||||| || ||||||||||||||||||||| ||||| | ||||| |||||| |||||||| | ||||||    
T  8149986 gatgaaagtaatattaattagagttataattggaaaaa-agtaattaatattgtattgaaaaatgaaatga 8149917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 20 - 78
Target Start/End: Original strand, 10355826 - 10355883
Alignment:
Q  20 tattaattagagttataattgaaaaaataataattgatattgcattgaaaagttaaatg 78  Q
    ||||||||||||||||||||||||||| | ||||| |||||| |||| ||||| |||||    
T  10355826 tattaattagagttataattgaaaaaa-agtaattaatattgtattggaaagtaaaatg 10355883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 11 - 77
Target Start/End: Complemental strand, 30459087 - 30459022
Alignment:
Q  11 tgaaaatattattaattagagttataattgaaaaaataataattgatattgcattgaaaagttaaat 77  Q
    ||||||| |||||||||||| ||||||||||||||||  ||||| |||||| ||| |||||| ||||    
T  30459087 tgaaaatgttattaattagaattataattgaaaaaat-gtaattaatattgtattaaaaagtaaaat 30459022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 9 - 79
Target Start/End: Original strand, 31581523 - 31581592
Alignment:
Q  9 gatgaaaatattattaattagagttataattgaaaaaataataattgatattgcattgaaaagttaaatga 79  Q
    ||||||| || |||||||||||||||||| || ||||| | ||||| |||||| |||||||||| ||||||    
T  31581523 gatgaaagtagtattaattagagttataaatggaaaaa-agtaattaatattgtattgaaaagtgaaatga 31581592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 9 - 77
Target Start/End: Complemental strand, 37157197 - 37157131
Alignment:
Q  9 gatgaaaatattattaattagagttataattgaaaaaataataattgatattgcattgaaaagttaaat 77  Q
    |||||||| | ||||||||||||||||||  ||||||  ||||||| |||||| |||||||||| ||||    
T  37157197 gatgaaaaaagtattaattagagttataaaagaaaaa--aataattaatattgtattgaaaagtgaaat 37157131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 34)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 9 - 78
Target Start/End: Original strand, 30903308 - 30903376
Alignment:
Q  9 gatgaaaatattattaattagagttataattgaaaaaataataattgatattgcattgaaaagttaaatg 78  Q
    |||||||||| ||||||||||||||||||||| ||||| ||||||| |||||| |||||||||| |||||    
T  30903308 gatgaaaataatattaattagagttataattggaaaaa-aataattaatattgaattgaaaagtgaaatg 30903376  T

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Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 9 - 77
Target Start/End: Original strand, 46139839 - 46139906
Alignment:
Q  9 gatgaaaatattattaattagagttataattgaaaaaataataattgatattgcattgaaaagttaaat 77  Q
    ||||||| || ||||||||| ||||||||||||||||||||||||| ||| || |||||||||| ||||    
T  46139839 gatgaaagtagtattaattaaagttataattgaaaaaataataattaata-tgtattgaaaagtaaaat 46139906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 9 - 77
Target Start/End: Complemental strand, 15290520 - 15290450
Alignment:
Q  9 gatgaaaatattattaattagagttataattgaaaaaataa--taattgatattgcattgaaaagttaaat 77  Q
    ||||||| |||||||||||| ||||||||||||||||| ||  ||||| |||||| |||||||||| ||||    
T  15290520 gatgaaagtattattaattatagttataattgaaaaaaaaaagtaattaatattgtattgaaaagtgaaat 15290450  T

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Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 3 - 77
Target Start/End: Complemental strand, 17342861 - 17342788
Alignment:
Q  3 gagagagatgaaaatattattaattagagttataattgaaaaaataataattgatattgcattgaaaagttaaat 77  Q
    ||||| ||| ||| || |||||||||||||||||| |||||||||| ||||| |||||| |||||||||| ||||    
T  17342861 gagagtgataaaagtagtattaattagagttataa-tgaaaaaatagtaattaatattgtattgaaaagtgaaat 17342788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 3 - 79
Target Start/End: Original strand, 3718924 - 3718998
Alignment:
Q  3 gagagagatgaaaatattattaattagagttataattgaaaaaataataattgatattgcattgaaaagttaaatga 79  Q
    ||||| ||||||  || ||||||||||||||||| ||| |||||  |||||| ||||||||||||||||| ||||||    
T  3718924 gagagtgatgaaggtagtattaattagagttatagttggaaaaa--ataattaatattgcattgaaaagtgaaatga 3718998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 9 - 78
Target Start/End: Complemental strand, 26583755 - 26583687
Alignment:
Q  9 gatgaaaatattattaattagagttataattgaaaaaataataattgatattgcattgaaaagttaaatg 78  Q
    ||||||||||||||||||||| |||||||||| || || | ||||| |||||| |||||||||| |||||    
T  26583755 gatgaaaatattattaattagtgttataattggaataa-agtaattaatattgtattgaaaagtgaaatg 26583687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 9 - 46
Target Start/End: Complemental strand, 29678853 - 29678816
Alignment:
Q  9 gatgaaaatattattaattagagttataattgaaaaaa 46  Q
    |||||||||||||| |||||||||||||||||||||||    
T  29678853 gatgaaaatattataaattagagttataattgaaaaaa 29678816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 9 - 46
Target Start/End: Complemental strand, 44657372 - 44657335
Alignment:
Q  9 gatgaaaatattattaattagagttataattgaaaaaa 46  Q
    |||||||||| |||||||||||||||||||||||||||    
T  44657372 gatgaaaataatattaattagagttataattgaaaaaa 44657335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 12 - 79
Target Start/End: Complemental strand, 1859530 - 1859465
Alignment:
Q  12 gaaaatattattaattagagttataattgaaaaaataataattgatattgcattgaaaagttaaatga 79  Q
    |||| ||| |||||||| ||||||||||||||||  ||||||| |||||| |||||||||| ||||||    
T  1859530 gaaagtatgattaattaaagttataattgaaaaa--aataattaatattgtattgaaaagtgaaatga 1859465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 11 - 79
Target Start/End: Original strand, 4466237 - 4466304
Alignment:
Q  11 tgaaaatattattaattagagttataattgaaaaaataataattgatattgcattgaaaagttaaatga 79  Q
    ||||| || ||||||||||||||||||||| ||||| ||||||| |||||| |||| ||||| ||||||    
T  4466237 tgaaagtagtattaattagagttataattggaaaaa-aataattaatattgtattggaaagtgaaatga 4466304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 3 - 79
Target Start/End: Complemental strand, 40061842 - 40061767
Alignment:
Q  3 gagagagatgaaaatattattaattagagttataattgaaaaaataataattgatattgcattgaaaagttaaatga 79  Q
    ||||| ||||||| || ||||||||||| |||||||| |||||| | ||||| ||||||||||||||| | ||||||    
T  40061842 gagagtgatgaaagtaatattaattagaattataatttaaaaaa-agtaattaatattgcattgaaaaataaaatga 40061767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 3 - 79
Target Start/End: Original strand, 2246352 - 2246430
Alignment:
Q  3 gagagagatgaaaatattattaattagagttataattg--aaaaaataataattgatattgcattgaaaagttaaatga 79  Q
    ||||| ||||||| || |||||| |||| |||||||||  |||||||||||||| ||||| ||||| ||||| ||||||    
T  2246352 gagagtgatgaaagtagtattaactagaattataattgcaaaaaaataataattaatattacattggaaagtgaaatga 2246430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 20 - 70
Target Start/End: Complemental strand, 16956399 - 16956351
Alignment:
Q  20 tattaattagagttataattgaaaaaataataattgatattgcattgaaaa 70  Q
    ||||||||||||||||||||||||||  | ||||| |||||||||||||||    
T  16956399 tattaattagagttataattgaaaaa--agtaattaatattgcattgaaaa 16956351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 11 - 46
Target Start/End: Original strand, 20988565 - 20988600
Alignment:
Q  11 tgaaaatattattaattagagttataattgaaaaaa 46  Q
    |||||||| |||||||||||||||||||||||||||    
T  20988565 tgaaaataatattaattagagttataattgaaaaaa 20988600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 20 - 79
Target Start/End: Complemental strand, 26760173 - 26760115
Alignment:
Q  20 tattaattagagttataattgaaaaaataataattgatattgcattgaaaagttaaatga 79  Q
    |||||||||| |||||||||||||||||  ||||| |||||| |||||||||| ||||||    
T  26760173 tattaattagtgttataattgaaaaaat-gtaattaatattgtattgaaaagtgaaatga 26760115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 20 - 79
Target Start/End: Original strand, 26924361 - 26924419
Alignment:
Q  20 tattaattagagttataattgaaaaaataataattgatattgcattgaaaagttaaatga 79  Q
    |||||||||| |||||||||||||||||  ||||| |||||| |||||||||| ||||||    
T  26924361 tattaattagtgttataattgaaaaaat-gtaattaatattgtattgaaaagtgaaatga 26924419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 20 - 79
Target Start/End: Original strand, 28706716 - 28706775
Alignment:
Q  20 tattaattagagttataattgaaaaaataataattgatattgcattgaaaagttaaatga 79  Q
    |||||||||||||||||||| |||||| | ||||| |||| | |||||||||| ||||||    
T  28706716 tattaattagagttataattaaaaaaaaagtaattcatatcgtattgaaaagtgaaatga 28706775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 3 - 77
Target Start/End: Complemental strand, 33149306 - 33149234
Alignment:
Q  3 gagagagatgaaaatattattaattagagttataattgaaaaaataataattgatattgcattgaaaagttaaat 77  Q
    ||||| ||||||| || |||||||||| ||||| ||||||||||   ||||| ||||||||||||||||| ||||    
T  33149306 gagagtgatgaaagtagtattaattagtgttattattgaaaaaag--taattaatattgcattgaaaagtgaaat 33149234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 9 - 80
Target Start/End: Original strand, 34877171 - 34877240
Alignment:
Q  9 gatgaaaatattattaattagagttataattgaaaaaataataattgatattgcattgaaaagttaaatgat 80  Q
    |||||||||| |||||||||||||||||| ||| |||| | ||||| |||||| |||||||||| |||||||    
T  34877171 gatgaaaataatattaattagagttataa-tgagaaaa-agtaattaatattgtattgaaaagtaaaatgat 34877240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 10 - 72
Target Start/End: Original strand, 47480024 - 47480084
Alignment:
Q  10 atgaaaatattattaattagagttataattgaaaaaataataattgatattgcattgaaaagt 72  Q
    |||||| || ||||||||| |||||||||| ||||||  |||||| |||||||||||||||||    
T  47480024 atgaaagtaatattaattatagttataattaaaaaaa--ataattaatattgcattgaaaagt 47480084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 11 - 79
Target Start/End: Original strand, 52146738 - 52146810
Alignment:
Q  11 tgaaaatattattaattagagttataatt----gaaaaaataataattgatattgcattgaaaagttaaatga 79  Q
    ||||| || ||||||||||||||||||||    ||||||| | ||||| |||||| |||||||||||||||||    
T  52146738 tgaaagtagtattaattagagttataattgaaagaaaaaaaagtaattaatattgtattgaaaagttaaatga 52146810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 11 - 70
Target Start/End: Original strand, 52382469 - 52382528
Alignment:
Q  11 tgaaaatattattaattagagttataattgaaaaaataataattgatattgcattgaaaa 70  Q
    ||||| || ||||||||||||||||||||||||||| | ||||| || ||| ||||||||    
T  52382469 tgaaagtaatattaattagagttataattgaaaaaaaagtaattaatgttgtattgaaaa 52382528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 11 - 77
Target Start/End: Original strand, 24131483 - 24131548
Alignment:
Q  11 tgaaaatattattaattagagttataattgaaaaaataataattgatattgcattgaaaagttaaat 77  Q
    ||||| || |||||||||| |||||||||| ||||| | ||||| ||||||||||||||||| ||||    
T  24131483 tgaaagtagtattaattagtgttataattggaaaaa-agtaattaatattgcattgaaaagtgaaat 24131548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 11 - 77
Target Start/End: Original strand, 37925329 - 37925394
Alignment:
Q  11 tgaaaatattattaattagagttataattgaaaaaataataattgatattgcattgaaaagttaaat 77  Q
    ||||| || |||||||||| |||||||||||||||| | ||||| |||||| |||||||||| ||||    
T  37925329 tgaaagtaatattaattagtgttataattgaaaaaa-agtaattaatattgtattgaaaagtaaaat 37925394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 4 - 46
Target Start/End: Complemental strand, 40019791 - 40019749
Alignment:
Q  4 agagagatgaaaatattattaattagagttataattgaaaaaa 46  Q
    |||| ||||||| || |||||||||||||||||||||||||||    
T  40019791 agagtgatgaaagtaatattaattagagttataattgaaaaaa 40019749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 9 - 71
Target Start/End: Complemental strand, 42309459 - 42309397
Alignment:
Q  9 gatgaaaatattattaattagagttataattgaaaaaataataattgatattgcattgaaaag 71  Q
    ||||||| || |||||||||||||||||| | |||||| | ||||| |||||| |||||||||    
T  42309459 gatgaaagtagtattaattagagttataaataaaaaaaaagtaattaatattgtattgaaaag 42309397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 9 - 78
Target Start/End: Complemental strand, 29225780 - 29225712
Alignment:
Q  9 gatgaaaatattattaattagagttataattgaaaaaataataattgatattgcattgaaaagttaaatg 78  Q
    ||||||| || ||||||||||||||||||||| ||||| | |||||  ||||| |||||||||| |||||    
T  29225780 gatgaaagtagtattaattagagttataattggaaaaa-agtaattattattgtattgaaaagtgaaatg 29225712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 9 - 70
Target Start/End: Original strand, 41968204 - 41968264
Alignment:
Q  9 gatgaaaatattattaattagagttataattgaaaaaataataattgatattgcattgaaaa 70  Q
    ||||||| || ||||||||||| |||||||| ||||||||||| ||  ||||||||||||||    
T  41968204 gatgaaagtaatattaattagaattataatt-aaaaaataatatttactattgcattgaaaa 41968264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 11 - 78
Target Start/End: Original strand, 7075486 - 7075551
Alignment:
Q  11 tgaaaatattattaattagagttataattgaaaaaataataattgatattgcattgaaaagttaaatg 78  Q
    ||||| || ||||||||||||||||||||||||||  || |||| || ||| |||||||||| |||||    
T  7075486 tgaaagtagtattaattagagttataattgaaaaa--aaaaattaatgttgtattgaaaagtgaaatg 7075551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 20 - 60
Target Start/End: Original strand, 8903391 - 8903431
Alignment:
Q  20 tattaattagagttataattgaaaaaataataattgatatt 60  Q
    ||||||||||| |||| |||||||||||||||||| |||||    
T  8903391 tattaattagaattatgattgaaaaaataataattaatatt 8903431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 11 - 79
Target Start/End: Original strand, 11425952 - 11426019
Alignment:
Q  11 tgaaaatattattaattagagttataattgaaaaaataataattgatattgcattgaaaagttaaatga 79  Q
    ||||| || ||||||||| ||||||||||||||||| | ||||| |||||| |||| ||||| ||||||    
T  11425952 tgaaagtagtattaattaaagttataattgaaaaaa-agtaattaatattgtattggaaagtgaaatga 11426019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 11 - 79
Target Start/End: Complemental strand, 16040102 - 16040035
Alignment:
Q  11 tgaaaatattattaattagagttataattgaaaaaataataattgatattgcattgaaaagttaaatga 79  Q
    ||||| || ||||| ||||||||||||||||||||| | ||||| |||||| |||| ||||| ||||||    
T  16040102 tgaaagtaatattatttagagttataattgaaaaaa-agtaattaatattgtattggaaagtgaaatga 16040035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #33
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 11 - 79
Target Start/End: Original strand, 18186289 - 18186355
Alignment:
Q  11 tgaaaatattattaattagagttataattgaaaaaataataattgatattgcattgaaaagttaaatga 79  Q
    ||||| || ||||||||||||||||||||||||||| | ||| | |||||| |||||||||| ||||||    
T  18186289 tgaaagtagtattaattagagttataattgaaaaaa-agtaa-taatattgtattgaaaagtgaaatga 18186355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #34
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 10 - 46
Target Start/End: Original strand, 35622861 - 35622897
Alignment:
Q  10 atgaaaatattattaattagagttataattgaaaaaa 46  Q
    |||||| || |||||||||||||||||||||||||||    
T  35622861 atgaaagtagtattaattagagttataattgaaaaaa 35622897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 25)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 11 - 79
Target Start/End: Complemental strand, 24451809 - 24451741
Alignment:
Q  11 tgaaaatattattaattagagttataattgaaaaaataataattgatattgcattgaaaagttaaatga 79  Q
    ||||| || ||||||||||||||||||||||||||| ||||||| |||||| |||| ||||| ||||||    
T  24451809 tgaaagtaatattaattagagttataattgaaaaaaaaataattaatattgtattggaaagtgaaatga 24451741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 3 - 78
Target Start/End: Original strand, 10069659 - 10069733
Alignment:
Q  3 gagagagatgaaaatattattaattagagttataattgaaaaaataataattgatattgcattgaaaagttaaatg 78  Q
    ||||| ||||||| ||||||||||||||||||| |||| ||||| | ||||| ||||||||||||||||| |||||    
T  10069659 gagagtgatgaaagtattattaattagagttatcattgtaaaaa-agtaattaatattgcattgaaaagtgaaatg 10069733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 9 - 70
Target Start/End: Original strand, 44284399 - 44284459
Alignment:
Q  9 gatgaaaatattattaattagagttataattgaaaaaataataattgatattgcattgaaaa 70  Q
    ||||||| ||||||||||||||||||||| ||||| || ||||||| |||||||||||||||    
T  44284399 gatgaaagtattattaattagagttataaatgaaataa-aataattaatattgcattgaaaa 44284459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 10 - 78
Target Start/End: Original strand, 18181294 - 18181362
Alignment:
Q  10 atgaaaatattattaattagagttataattgaaaaaataataattgatattgcattgaaaagttaaatg 78  Q
    |||||| || ||||||||||||||||||||  ||||| ||||||| |||||| |||||||||| |||||    
T  18181294 atgaaagtagtattaattagagttataattagaaaaaaaataattaatattgtattgaaaagtgaaatg 18181362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 9 - 72
Target Start/End: Original strand, 5007622 - 5007684
Alignment:
Q  9 gatgaaaatattattaattagagttataattgaaaaaataataattgatattgcattgaaaagt 72  Q
    ||||||| || |||||||||||||||||||||||||||   ||||| |||||||||||||||||    
T  5007622 gatgaaagtagtattaattagagttataattgaaaaaa-ggtaattaatattgcattgaaaagt 5007684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 4 - 79
Target Start/End: Original strand, 6213925 - 6214000
Alignment:
Q  4 agagagatgaaaatattattaattagagttataattgaaaaaataataattgatattgcattgaaaagttaaatga 79  Q
    |||| ||||||| || ||||||||| ||||| ||||||||||| ||  ||| ||||||||||||||||| ||||||    
T  6213925 agagtgatgaaagtagtattaattaaagttaaaattgaaaaaaaaagtattcatattgcattgaaaagtgaaatga 6214000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 11 - 78
Target Start/End: Complemental strand, 13222093 - 13222027
Alignment:
Q  11 tgaaaatattattaattagagttataattgaaaaaataataattgatattgcattgaaaagttaaatg 78  Q
    ||||| || |||||||||| |||||||||||||||| ||||||| |||||| |||||||||| |||||    
T  13222093 tgaaagtaatattaattagtgttataattgaaaaaa-aataattaatattgtattgaaaagtgaaatg 13222027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 9 - 79
Target Start/End: Complemental strand, 3123670 - 3123601
Alignment:
Q  9 gatgaaaatattattaattagagttataattgaaaaaataataattgatattgcattgaaaagttaaatga 79  Q
    |||||||||| ||||||||||||||||||  | ||||||||||||| |||||| |||| ||||| ||||||    
T  3123670 gatgaaaataatattaattagagttataa-aggaaaaataataattaatattgtattggaaagtgaaatga 3123601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 3 - 77
Target Start/End: Original strand, 33602303 - 33602379
Alignment:
Q  3 gagagagatgaaaatattattaattagagttataattg--aaaaaataataattgatattgcattgaaaagttaaat 77  Q
    ||||| ||||||| ||  |||||||||||||||||||   |||||||||||||| |||||| |||||||||| ||||    
T  33602303 gagagtgatgaaagtaacattaattagagttataattagaaaaaaataataattaatattgtattgaaaagtgaaat 33602379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 77
Target Start/End: Complemental strand, 44736754 - 44736679
Alignment:
Q  1 tcgagagagatgaaaatattattaattagagttataattgaaaaaataataattgatattgcattgaaaagttaaat 77  Q
    ||||||| ||| ||| || ||||||||||||||||||||| ||||| | ||||| | |||||||| |||||||||||    
T  44736754 tcgagagtgataaaagtagtattaattagagttataattggaaaaa-agtaattaacattgcatttaaaagttaaat 44736679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 11 - 46
Target Start/End: Original strand, 1908576 - 1908611
Alignment:
Q  11 tgaaaatattattaattagagttataattgaaaaaa 46  Q
    |||||||| |||||||||||||||||||||||||||    
T  1908576 tgaaaataatattaattagagttataattgaaaaaa 1908611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 11 - 46
Target Start/End: Complemental strand, 2048317 - 2048282
Alignment:
Q  11 tgaaaatattattaattagagttataattgaaaaaa 46  Q
    |||||||| |||||||||||||||||||||||||||    
T  2048317 tgaaaataatattaattagagttataattgaaaaaa 2048282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 9 - 79
Target Start/End: Complemental strand, 2756701 - 2756633
Alignment:
Q  9 gatgaaaatattattaattagagttataattgaaaaaataataattgatattgcattgaaaagttaaatga 79  Q
    |||| ||||| |||||||||||||||||||||| |||  ||||||| |||||||||| | |||| ||||||    
T  2756701 gatgtaaatagtattaattagagttataattgagaaa--aataattaatattgcattaataagtaaaatga 2756633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 11 - 78
Target Start/End: Original strand, 7931578 - 7931644
Alignment:
Q  11 tgaaaatattattaattagagttataattgaaaaaataataattgatattgcattgaaaagttaaatg 78  Q
    ||||| || ||||||||||||||||||||||||||| | ||||| || ||| |||||||||| |||||    
T  7931578 tgaaagtagtattaattagagttataattgaaaaaa-agtaattaatgttgtattgaaaagtgaaatg 7931644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 9 - 79
Target Start/End: Complemental strand, 9937043 - 9936975
Alignment:
Q  9 gatgaaaatattattaattagagttataattgaaaaaataataattgatattgcattgaaaagttaaatga 79  Q
    ||||||| || ||||||||| ||||||||||||||||  ||||||| |||||| ||||||| || ||||||    
T  9937043 gatgaaattaatattaattaaagttataattgaaaaa--aataattaatattgtattgaaatgtgaaatga 9936975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 11 - 78
Target Start/End: Complemental strand, 24356136 - 24356070
Alignment:
Q  11 tgaaaatattattaattagagttataattgaaaaaataataattgatattgcattgaaaagttaaatg 78  Q
    ||||| || ||||||||||||||||||||||||||| | ||||| || ||| |||||||||| |||||    
T  24356136 tgaaagtagtattaattagagttataattgaaaaaa-agtaattaatgttgtattgaaaagtgaaatg 24356070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 4 - 79
Target Start/End: Original strand, 31546093 - 31546167
Alignment:
Q  4 agagagatgaaaatattattaattagagttataattgaaaaaataataattgatattgcattgaaaagttaaatga 79  Q
    |||| ||||||| || |||| |||||||||||||||||||||| | ||||| |||||| ||| |||||| ||||||    
T  31546093 agagtgatgaaagtagtattgattagagttataattgaaaaaa-agtaattaatattgtatttaaaagtgaaatga 31546167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 11 - 77
Target Start/End: Original strand, 37529153 - 37529218
Alignment:
Q  11 tgaaaatattattaattagagttataattgaaaaaataataattgatattgcattgaaaagttaaat 77  Q
    ||||| || ||||||||||||||||||||||||||| | ||||| |||||| |||| ||||| ||||    
T  37529153 tgaaagtaatattaattagagttataattgaaaaaa-agtaattaatattgtattggaaagtgaaat 37529218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 9 - 79
Target Start/End: Complemental strand, 38392899 - 38392830
Alignment:
Q  9 gatgaaaatattattaattagagttataattgaaaaaataataattgatattgcattgaaaagttaaatga 79  Q
    ||||||| || |||||||||||||||||| |||||||| ||||||| || ||| ||| |||||| ||||||    
T  38392899 gatgaaagtaatattaattagagttataactgaaaaaa-aataattaatgttgtattaaaaagtgaaatga 38392830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 20 - 77
Target Start/End: Original strand, 43950530 - 43950585
Alignment:
Q  20 tattaattagagttataattgaaaaaataataattgatattgcattgaaaagttaaat 77  Q
    ||||||||| ||||||||||||||||  ||||||| ||||| ||||||||||| ||||    
T  43950530 tattaattaaagttataattgaaaaa--aataattaatattacattgaaaagtgaaat 43950585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 3 - 79
Target Start/End: Original strand, 45464291 - 45464364
Alignment:
Q  3 gagagagatgaaaatattattaattagagttataattgaaaaaataataattgatattgcattgaaaagttaaatga 79  Q
    ||||| ||||| | || ||||||||||||||||||||   |||| ||||||| ||||||||||| ||||| ||||||    
T  45464291 gagagtgatgatagtaatattaattagagttataatt---aaaaaaataattaatattgcattggaaagtaaaatga 45464364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 9 - 77
Target Start/End: Complemental strand, 6075525 - 6075456
Alignment:
Q  9 gatgaaaatattattaattagagttataatt-gaaaaaataataattgatattgcattgaaaagttaaat 77  Q
    ||||||| || |||||||||||||||||||| ||||||| |||||||  ||||| | |||||||| ||||    
T  6075525 gatgaaagtagtattaattagagttataattggaaaaaaaaataattattattgtagtgaaaagtgaaat 6075456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 20 - 77
Target Start/End: Complemental strand, 19009862 - 19009805
Alignment:
Q  20 tattaattagagttataattgaaaaaataataattgatattgcattgaaaagttaaat 77  Q
    |||||| ||||||||||| |||||||| | ||||| |||||| |||||||||| ||||    
T  19009862 tattaagtagagttataaatgaaaaaaaagtaattaatattgtattgaaaagtgaaat 19009805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 3 - 79
Target Start/End: Complemental strand, 31592583 - 31592509
Alignment:
Q  3 gagagagatgaaaatattattaattagagttataattgaaaaaataataattgatattgcattgaaaagttaaatga 79  Q
    ||||| |||||||||| ||||||||| ||||||||||| ||||  | |||||  ||||| |||||||||| ||||||    
T  31592583 gagagtgatgaaaataatattaattaaagttataattggaaaa--agtaattattattgtattgaaaagtgaaatga 31592509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 9 - 78
Target Start/End: Complemental strand, 4794600 - 4794529
Alignment:
Q  9 gatgaaaatattattaattagagttataattg--aaaaaataataattgatattgcattgaaaagttaaatg 78  Q
    ||||||| || |||||||||||||||||||||   ||||| | ||||| |||||| |||||||||| |||||    
T  4794600 gatgaaagtagtattaattagagttataattggagaaaaaaattaattaatattgtattgaaaagtgaaatg 4794529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0067 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: scaffold0067
Description:

Target: scaffold0067; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 13 - 79
Target Start/End: Complemental strand, 1910 - 1845
Alignment:
Q  13 aaaatattattaattagagttataattgaaaaaataataattgatattgcattgaaaagttaaatga 79  Q
    |||||| ||||||||||| |||||||| ||||| |||||||| ||||||||||||||||| ||||||    
T  1910 aaaataatattaattagacttataattcaaaaa-taataattaatattgcattgaaaagtgaaatga 1845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0007 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 2)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 20 - 78
Target Start/End: Complemental strand, 158043 - 157986
Alignment:
Q  20 tattaattagagttataattgaaaaaataataattgatattgcattgaaaagttaaatg 78  Q
    ||||||||||||||||||||||||||| ||||||| |||||| |||||||||| |||||    
T  158043 tattaattagagttataattgaaaaaa-aataattaatattgtattgaaaagtgaaatg 157986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0007; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 11 - 79
Target Start/End: Complemental strand, 230281 - 230215
Alignment:
Q  11 tgaaaatattattaattagagttataattgaaaaaataataattgatattgcattgaaaagttaaatga 79  Q
    ||||| || ||||||||||||||||||  ||||||  ||||||| |||||| |||||||||| ||||||    
T  230281 tgaaagtaatattaattagagttataaaagaaaaa--aataattaatattgtattgaaaagtgaaatga 230215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 14)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 10 - 72
Target Start/End: Original strand, 44219114 - 44219175
Alignment:
Q  10 atgaaaatattattaattagagttataattgaaaaaataataattgatattgcattgaaaagt 72  Q
    ||||||||| ||||||||||||||||||||| ||||| | ||||| |||||||||||||||||    
T  44219114 atgaaaatagtattaattagagttataattggaaaaa-agtaattaatattgcattgaaaagt 44219175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 9 - 78
Target Start/End: Original strand, 37041953 - 37042024
Alignment:
Q  9 gatgaaaatattattaattagagttataattgaaaaaataa-taattgat-attgcattgaaaagttaaatg 78  Q
    ||||||| || ||||||||||||||||||||||||||| || ||||| || |||| ||||||||||||||||    
T  37041953 gatgaaagtagtattaattagagttataattgaaaaaaaaagtaattaataattgtattgaaaagttaaatg 37042024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 20 - 79
Target Start/End: Original strand, 53754155 - 53754214
Alignment:
Q  20 tattaattagagttataattgaaaaaataataattgatattgcattgaaaagttaaatga 79  Q
    ||||||||||||||||||||||||||| ||||||| || ||| |||||||| | ||||||    
T  53754155 tattaattagagttataattgaaaaaaaaataattaatgttgtattgaaaactgaaatga 53754214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 4 - 70
Target Start/End: Complemental strand, 45746398 - 45746332
Alignment:
Q  4 agagagatgaaaatattattaattagagttataattgaaaaaataataattgatattgcattgaaaa 70  Q
    |||| ||||||| || ||||||||||||||||||||||||||| || ||||  ||||| ||||||||    
T  45746398 agagtgatgaaagtagtattaattagagttataattgaaaaaaaaacaattattattgtattgaaaa 45746332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 3 - 79
Target Start/End: Original strand, 3862246 - 3862320
Alignment:
Q  3 gagagagatgaaaatattattaattagagttataattgaaaaaataataattgatattgcattgaaaagttaaatga 79  Q
    ||||| ||||||| || ||||||||||||||||||||||||||  | ||||| | |||| |||||||||| ||||||    
T  3862246 gagagtgatgaaagtaatattaattagagttataattgaaaaa--agtaattaaaattgtattgaaaagtgaaatga 3862320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 17777066 - 17777111
Alignment:
Q  1 tcgagagagatgaaaatattattaattagagttataattgaaaaaa 46  Q
    ||||||| |||||||||| ||||||||||||||||| |||||||||    
T  17777066 tcgagagtgatgaaaataatattaattagagttatatttgaaaaaa 17777111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 19078367 - 19078412
Alignment:
Q  1 tcgagagagatgaaaatattattaattagagttataattgaaaaaa 46  Q
    ||||||| |||||||||| ||||||||||||||||| |||||||||    
T  19078367 tcgagagtgatgaaaataatattaattagagttatatttgaaaaaa 19078412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 20 - 72
Target Start/End: Original strand, 42995278 - 42995328
Alignment:
Q  20 tattaattagagttataattgaaaaaataataattgatattgcattgaaaagt 72  Q
    |||||||||||||| |||||  ||||||||||||| |||||||||||||||||    
T  42995278 tattaattagagttttaatt--aaaaataataattaatattgcattgaaaagt 42995328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 11 - 78
Target Start/End: Original strand, 32977872 - 32977938
Alignment:
Q  11 tgaaaatattattaattagagttataattgaaaaaataataattgatattgcattgaaaagttaaatg 78  Q
    ||||| || ||||||||||||||||||||| | ||| ||||||| || |||||||||||||| |||||    
T  32977872 tgaaagtagtattaattagagttataattggagaaa-aataattaatgttgcattgaaaagtgaaatg 32977938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 11 - 78
Target Start/End: Complemental strand, 53051051 - 53050985
Alignment:
Q  11 tgaaaatattattaattagagttataattgaaaaaataataattgatattgcattgaaaagttaaatg 78  Q
    ||||| || ||||||||||||||||||||| | ||| | ||||| ||||||||||||||||| |||||    
T  53051051 tgaaagtagtattaattagagttataattggagaaa-agtaattaatattgcattgaaaagtgaaatg 53050985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 9 - 78
Target Start/End: Complemental strand, 2868601 - 2868533
Alignment:
Q  9 gatgaaaatattattaattagagttataattgaaaaaataataattgatattgcattgaaaagttaaatg 78  Q
    ||||||| || |||||||||||||| ||||| | |||| ||||||| |||||| |||||||||| |||||    
T  2868601 gatgaaagtaatattaattagagttgtaatt-agaaaaaaataattaatattgtattgaaaagtgaaatg 2868533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 42 - 78
Target Start/End: Complemental strand, 12744808 - 12744772
Alignment:
Q  42 aaaaataataattgatattgcattgaaaagttaaatg 78  Q
    ||||||||||||| ||||||||||||||||| |||||    
T  12744808 aaaaataataattaatattgcattgaaaagtgaaatg 12744772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 11 - 79
Target Start/End: Original strand, 21585492 - 21585559
Alignment:
Q  11 tgaaaatattattaattagagttataattgaaaaaataataattgatattgcattgaaaagttaaatga 79  Q
    ||||| || |||||||||||||||||||||  |||| ||||||| |||||| |||| ||||| ||||||    
T  21585492 tgaaagtaatattaattagagttataattgggaaaa-aataattaatattgtattggaaagtgaaatga 21585559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 3 - 79
Target Start/End: Original strand, 32023175 - 32023250
Alignment:
Q  3 gagagagatgaaaatattattaattagagttataattgaaaaaataataattgatattgcattgaaaagttaaatga 79  Q
    ||||| ||||||| || ||||||||||||||||||  | ||||| ||||||| |||||| |||| ||||| ||||||    
T  32023175 gagagtgatgaaagtaatattaattagagttataaagggaaaaa-aataattaatattgtattggaaagtgaaatga 32023250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 38; Significance: 0.000000000002; HSPs: 25)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 3 - 79
Target Start/End: Original strand, 13422427 - 13422501
Alignment:
Q  3 gagagagatgaaaatattattaattagagttataattgaaaaaataataattgatattgcattgaaaagttaaatga 79  Q
    ||||| ||||||| || ||||||||| ||||||||||  ||||||||||||| |||||| |||||||||| ||||||    
T  13422427 gagagtgatgaaagtaatattaattatagttataatt--aaaaataataattaatattgtattgaaaagtgaaatga 13422501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 11 - 79
Target Start/End: Original strand, 16884014 - 16884083
Alignment:
Q  11 tgaaaatattattaattagagttataattgaaaaaata-ataattgatattgcattgaaaagttaaatga 79  Q
    ||||| || |||||||||||||||||||| |||||||| |||||| ||||| ||||||||||| ||||||    
T  16884014 tgaaagtagtattaattagagttataattaaaaaaatatataattaatattacattgaaaagtgaaatga 16884083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 9 - 70
Target Start/End: Complemental strand, 35967331 - 35967271
Alignment:
Q  9 gatgaaaatattattaattagagttataattgaaaaaataataattgatattgcattgaaaa 70  Q
    ||||||| |||||||||||| ||||||||||||| ||| ||||||| |||||||||||||||    
T  35967331 gatgaaagtattattaattaaagttataattgaagaaa-aataattaatattgcattgaaaa 35967271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 9 - 70
Target Start/End: Original strand, 6173061 - 6173123
Alignment:
Q  9 gatgaaaatattattaattagagttataattg-aaaaaataataattgatattgcattgaaaa 70  Q
    ||||||| || ||||||||| ||||||||||| |||||||||||||| |||||||||| ||||    
T  6173061 gatgaaagtagtattaattatagttataattgaaaaaaataataattaatattgcattaaaaa 6173123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 11 - 77
Target Start/End: Complemental strand, 42818929 - 42818864
Alignment:
Q  11 tgaaaatattattaattagagttataattgaaaaaataataattgatattgcattgaaaagttaaat 77  Q
    |||||||| ||||||||||||||||||||||||||| | ||||| |||||  |||||||||| ||||    
T  42818929 tgaaaatagtattaattagagttataattgaaaaaa-agtaattaatattatattgaaaagtgaaat 42818864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 10 - 79
Target Start/End: Original strand, 14184130 - 14184199
Alignment:
Q  10 atgaaaatattattaattagagttataattgaaaaaataataattgatattgcattgaaaagttaaatga 79  Q
    ||||||||  ||||||||| ||||||||||| ||||| | ||||| |||||| |||||||||| ||||||    
T  14184130 atgaaaatgatattaattatagttataattggaaaaaaagtaattaatattgtattgaaaagtgaaatga 14184199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 3 - 76
Target Start/End: Complemental strand, 22982980 - 22982908
Alignment:
Q  3 gagagagatgaaaatattattaattagagttataattgaaaaaataataattgatattgcattgaaaagttaaa 76  Q
    ||||| ||||||| || ||||||||  ||||||||||||||||| |||||||  ||||| ||||||||||||||    
T  22982980 gagagtgatgaaagtagtattaattgaagttataattgaaaaaa-aataattattattgtattgaaaagttaaa 22982908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 3 - 72
Target Start/End: Original strand, 35585691 - 35585760
Alignment:
Q  3 gagagagatgaaaatattattaattagagttataattgaaaaaataataattgatattgcattgaaaagt 72  Q
    ||||| ||||||| || |||| |||| ||||||||||||||||| | ||||| |||||| ||||||||||    
T  35585691 gagagtgatgaaagtaatattgattaaagttataattgaaaaaaaagtaattaatattgtattgaaaagt 35585760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 11 - 52
Target Start/End: Original strand, 36006975 - 36007016
Alignment:
Q  11 tgaaaatattattaattagagttataattgaaaaaataataa 52  Q
    |||||||| ||||||||||||||||||||| |||||||||||    
T  36006975 tgaaaataatattaattagagttataattggaaaaataataa 36007016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 3 - 79
Target Start/End: Original strand, 39183702 - 39183776
Alignment:
Q  3 gagagagatgaaaatattattaattagagttataattgaaaaaataataattgatattgcattgaaaagttaaatga 79  Q
    ||||| ||||||| || ||||||||||||||||||||||||||  | ||||| |||||| |||||||| | ||||||    
T  39183702 gagagtgatgaaagtaatattaattagagttataattgaaaaa--agtaattaatattgtattgaaaaataaaatga 39183776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 20 - 78
Target Start/End: Complemental strand, 5072966 - 5072911
Alignment:
Q  20 tattaattagagttataattgaaaaaataataattgatattgcattgaaaagttaaatg 78  Q
    ||||||||||||||||||||||||||||||| ||||   ||| |||||||||| |||||    
T  5072966 tattaattagagttataattgaaaaaataattattg---ttgtattgaaaagtgaaatg 5072911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 20 - 72
Target Start/End: Original strand, 33498588 - 33498639
Alignment:
Q  20 tattaattagagttataattgaaaaaataataattgatattgcattgaaaagt 72  Q
    ||||||||||||||||||||  ||||| ||||||| |||||||||||||||||    
T  33498588 tattaattagagttataattagaaaaa-aataattaatattgcattgaaaagt 33498639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 3 - 50
Target Start/End: Complemental strand, 35666918 - 35666870
Alignment:
Q  3 gagagagatgaaaatattattaattagagttataatt-gaaaaaataat 50  Q
    ||||| |||||||||||||||||||||| |||||||| |||||||||||    
T  35666918 gagagtgatgaaaatattattaattagacttataattagaaaaaataat 35666870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 9 - 77
Target Start/End: Complemental strand, 41184144 - 41184077
Alignment:
Q  9 gatgaaaatattattaattagagttataattgaaaaaataataattgatattgcattgaaaagttaaat 77  Q
    ||||||| || |||||||||||||||||| |||||||||  ||||| |||||| |||||||||| ||||    
T  41184144 gatgaaagtaatattaattagagttataaatgaaaaaat-gtaattaatattgtattgaaaagtaaaat 41184077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 11 - 78
Target Start/End: Complemental strand, 4194665 - 4194599
Alignment:
Q  11 tgaaaatattattaattagagttataattgaaaaaataataattgatattgcattgaaaagttaaatg 78  Q
    ||||| || |||||||||| |||||||||||||||| | ||||| |||||| |||||||||| |||||    
T  4194665 tgaaagtagtattaattagtgttataattgaaaaaa-agtaattaatattgtattgaaaagtgaaatg 4194599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 11 - 70
Target Start/End: Original strand, 8369779 - 8369838
Alignment:
Q  11 tgaaaatattattaattagagttataattgaaaaaataataattgatattgcattgaaaa 70  Q
    ||||| || ||||||||||||||||||  ||||||| ||||||| |||||| ||||||||    
T  8369779 tgaaagtagtattaattagagttataaaagaaaaaaaaataattaatattgtattgaaaa 8369838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 9 - 79
Target Start/End: Complemental strand, 4412410 - 4412341
Alignment:
Q  9 gatgaaaatattattaattagagttataattgaaaaaataataattgatattgcattgaaaagttaaatga 79  Q
    |||||||||| ||||||||||||||||||  | ||||| | ||||| |||||| |||||||||| ||||||    
T  4412410 gatgaaaatagtattaattagagttataaagggaaaaa-agtaattaatattgtattgaaaagtgaaatga 4412341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 20 - 78
Target Start/End: Complemental strand, 16926453 - 16926395
Alignment:
Q  20 tattaattagagttataattgaaaaaataataattgatattgcattgaaaagttaaatg 78  Q
    ||||||||||||||||||||| ||||| |||||||  ||||| ||| |||||| |||||    
T  16926453 tattaattagagttataattggaaaaaaaataattattattgtattcaaaagtgaaatg 16926395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 20 - 50
Target Start/End: Complemental strand, 34534938 - 34534908
Alignment:
Q  20 tattaattagagttataattgaaaaaataat 50  Q
    |||||||||||||||||||||||||||||||    
T  34534938 tattaattagagttataattgaaaaaataat 34534908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 20 - 77
Target Start/End: Complemental strand, 24534618 - 24534562
Alignment:
Q  20 tattaattagagttataattgaaaaaataataattgatattgcattgaaaagttaaat 77  Q
    |||||||||| |||||||||||||||| | ||||| |||||| |||||||||| ||||    
T  24534618 tattaattagtgttataattgaaaaaa-agtaattaatattgtattgaaaagtgaaat 24534562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 9 - 49
Target Start/End: Complemental strand, 15254792 - 15254752
Alignment:
Q  9 gatgaaaatattattaattagagttataattgaaaaaataa 49  Q
    ||||||| || |||||||||||||||||||| |||||||||    
T  15254792 gatgaaagtaatattaattagagttataattaaaaaaataa 15254752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 9 - 79
Target Start/End: Complemental strand, 15814688 - 15814621
Alignment:
Q  9 gatgaaaatattattaattagagttataattgaaaaaataataattgatattgcattgaaaagttaaatga 79  Q
    ||||||| || ||||||||||||||||||   | |||| ||||||| |||||| |||||||||| ||||||    
T  15814688 gatgaaagtagtattaattagagttataa---agaaaaaaataattaatattgtattgaaaagtgaaatga 15814621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 21 - 72
Target Start/End: Original strand, 35465058 - 35465110
Alignment:
Q  21 attaattagagttataattgaaaaaa-taataattgatattgcattgaaaagt 72  Q
    |||||||||| ||||||||||||||| || ||||| |||||||||| ||||||    
T  35465058 attaattagaattataattgaaaaaagtagtaattaatattgcattaaaaagt 35465110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 11 - 79
Target Start/End: Complemental strand, 39008154 - 39008087
Alignment:
Q  11 tgaaaatattattaattagagttataattgaaaaaataataattgatattgcattgaaaagttaaatga 79  Q
    ||||| || ||||||||||||||||||  | ||||| ||||||| |||||| |||||||||| ||||||    
T  39008154 tgaaagtagtattaattagagttataaagggaaaaa-aataattaatattgtattgaaaagtgaaatga 39008087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 9 - 72
Target Start/End: Original strand, 39212632 - 39212700
Alignment:
Q  9 gatgaaaatattattaattagagttataattgaaaaaataa-----taattgatattgcattgaaaagt 72  Q
    ||||||| || ||||||||||||||||||||||| ||| ||     ||||| |||||||||||||||||    
T  39212632 gatgaaagtagtattaattagagttataattgaagaaaaaaaaaagtaattaatattgcattgaaaagt 39212700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0654 (Bit Score: 37; Significance: 0.000000000007; HSPs: 1)
Name: scaffold0654
Description:

Target: scaffold0654; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 3 - 78
Target Start/End: Original strand, 2732 - 2805
Alignment:
Q  3 gagagagatgaaaatattattaattagagttataattgaaaaaataataattgatattgcattgaaaagttaaatg 78  Q
    ||||| ||||||| || ||||||||||||||||||||||||||  || |||| ||||||||||| ||||| |||||    
T  2732 gagagtgatgaaattagtattaattagagttataattgaaaaa--aaaaattaatattgcattgtaaagtaaaatg 2805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0578 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: scaffold0578
Description:

Target: scaffold0578; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 9 - 72
Target Start/End: Complemental strand, 4056 - 3994
Alignment:
Q  9 gatgaaaatattattaattagagttataattgaaaaaataataattgatattgcattgaaaagt 72  Q
    ||||||| || |||||||||||||||||||||||||||   ||||| |||||||||||||||||    
T  4056 gatgaaagtagtattaattagagttataattgaaaaaa-ggtaattaatattgcattgaaaagt 3994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 35; Significance: 0.0000000001; HSPs: 12)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 11 - 77
Target Start/End: Original strand, 34803789 - 34803854
Alignment:
Q  11 tgaaaatattattaattagagttataattgaaaaaataataattgatattgcattgaaaagttaaat 77  Q
    ||||| || ||||||||| ||||||||||||||||| | |||||||||||| |||||||||| ||||    
T  34803789 tgaaagtagtattaattatagttataattgaaaaaa-agtaattgatattgtattgaaaagtgaaat 34803854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 9 - 46
Target Start/End: Complemental strand, 2362383 - 2362346
Alignment:
Q  9 gatgaaaatattattaattagagttataattgaaaaaa 46  Q
    |||||||||||||||||||||| |||||||||||||||    
T  2362383 gatgaaaatattattaattagaattataattgaaaaaa 2362346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 3 - 46
Target Start/End: Original strand, 14306315 - 14306358
Alignment:
Q  3 gagagagatgaaaatattattaattagagttataattgaaaaaa 46  Q
    ||||| |||||| ||||||||||||||||||||| |||||||||    
T  14306315 gagagtgatgaacatattattaattagagttatatttgaaaaaa 14306358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 3 - 46
Target Start/End: Original strand, 14312722 - 14312765
Alignment:
Q  3 gagagagatgaaaatattattaattagagttataattgaaaaaa 46  Q
    ||||| |||||| ||||||||||||||||||||| |||||||||    
T  14312722 gagagtgatgaacatattattaattagagttatatttgaaaaaa 14312765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 10 - 77
Target Start/End: Complemental strand, 31723520 - 31723454
Alignment:
Q  10 atgaaaatattattaattagagttataattgaaaaaataataattgatattgcattgaaaagttaaat 77  Q
    ||||||||| ||||||||| | ||||||||||||||| | ||||| |||||| |||||||||| ||||    
T  31723520 atgaaaataatattaattataattataattgaaaaaa-agtaattaatattgtattgaaaagtgaaat 31723454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 9 - 79
Target Start/End: Complemental strand, 6787322 - 6787253
Alignment:
Q  9 gatgaaaatattattaattagagttataattgaaaaaataataattgatattgcattgaaaagttaaatga 79  Q
    ||||||| || | ||||||||||||||| ||  ||||| ||||||| ||||||||||||||||| ||||||    
T  6787322 gatgaaagtagttttaattagagttatatttagaaaaa-aataattaatattgcattgaaaagtgaaatga 6787253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 21 - 78
Target Start/End: Complemental strand, 7844351 - 7844296
Alignment:
Q  21 attaattagagttataattgaaaaaataataattgatattgcattgaaaagttaaatg 78  Q
    ||||||||| |||||||||||||||  ||||||| ||||||||| ||||||| |||||    
T  7844351 attaattagtgttataattgaaaaa--aataattaatattgcatcgaaaagtgaaatg 7844296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 20 - 72
Target Start/End: Complemental strand, 25398940 - 25398887
Alignment:
Q  20 tattaattagagt-tataattgaaaaaataataattgatattgcattgaaaagt 72  Q
    ||||||||| ||| |||||||||||||| | ||||| |||||||||||||||||    
T  25398940 tattaattaaagtatataattgaaaaaaaattaattaatattgcattgaaaagt 25398887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 11 - 79
Target Start/End: Complemental strand, 31265804 - 31265738
Alignment:
Q  11 tgaaaatattattaattagagttataattgaaaaaataataattgatattgcattgaaaagttaaatga 79  Q
    ||||| || ||||||||||||||||||  ||||||  ||||||| |||||| |||||||||| ||||||    
T  31265804 tgaaagtaatattaattagagttataaaggaaaaa--aataattaatattgtattgaaaagtgaaatga 31265738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 9 - 78
Target Start/End: Complemental strand, 33109400 - 33109332
Alignment:
Q  9 gatgaaaatattattaattagagttataattgaaaaaataataattgatattgcattgaaaagttaaatg 78  Q
    ||||||| || |||||||||||||||||| || ||||| |||||||  ||||| |||||||||| |||||    
T  33109400 gatgaaagtagtattaattagagttataaatggaaaaa-aataattagtattgtattgaaaagtaaaatg 33109332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 9 - 77
Target Start/End: Original strand, 2310368 - 2310435
Alignment:
Q  9 gatgaaaatattattaattagagttataattgaaaaaataataattgatattgcattgaaaagttaaat 77  Q
    ||||||| || |||||||||  |||||||||||||||| | ||||| |||||| |||||||||| ||||    
T  2310368 gatgaaagtagtattaattaatgttataattgaaaaaa-agtaattaatattgtattgaaaagtgaaat 2310435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 11 - 79
Target Start/End: Original strand, 3604682 - 3604749
Alignment:
Q  11 tgaaaatattattaattagagttataattgaaaaaataataattgatattgcattgaaaagttaaatga 79  Q
    ||||| || ||||||||||||||||||  | ||||| ||||||| |||||| |||||||||| ||||||    
T  3604682 tgaaagtaatattaattagagttataaagggaaaaa-aataattaatattgtattgaaaagtgaaatga 3604749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0685 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: scaffold0685
Description:

Target: scaffold0685; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 11 - 70
Target Start/End: Original strand, 6482 - 6541
Alignment:
Q  11 tgaaaatattattaattagagttataattgaaaaaataataattgatattgcattgaaaa 70  Q
    ||||| || ||||||||||||||||||||||||||| | ||||| || ||| ||||||||    
T  6482 tgaaagtaatattaattagagttataattgaaaaaaaagtaattaatgttgtattgaaaa 6541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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