View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1706_low_34 (Length: 298)
Name: NF1706_low_34
Description: NF1706
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1706_low_34 |
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Alignment Details
Target: chr2 (Bit Score: 221; Significance: 1e-121; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 1 - 280
Target Start/End: Complemental strand, 39112672 - 39112393
Alignment:
| Q |
1 |
tctagatcaatcatcatcaaatagtgcaaatacaatattatatgcatggcatgaaaataaggttggaaagtatgaatgatnnnnnnnnnnnnnnnnncat |
100 |
Q |
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| T |
39112672 |
tctagatcaatcatcatcaaatagtgcaaatacaatattatatgcatggcatgaaaataaggttggaaaatatgaatgataaaataaaaataaaaaacat |
39112573 |
T |
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| Q |
101 |
gaaaagacatgggaatgatttgttggatttgtaagcgaatgaaagatagttaccagcagcaattgaattgaaacacaaatgagaaacacaagaggaagag |
200 |
Q |
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| T |
39112572 |
gaaaagacatgggaatgatttgttggatttgtaagcgaatgaaagatagttaccagcagcaattgaattgaaacacaaatgagaaacacaagaggaagag |
39112473 |
T |
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| Q |
201 |
gcggaaacaaataacgttgtaattttgaaaggtggtgtggtgtttttgtatccttcaaaaagggttgctgacgtgacttg |
280 |
Q |
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| T |
39112472 |
gcggaaacaaataacgttgtaattttgaaaggtggtgtggtgtttttgtatgcttcaaaaagggttgctgacgtgacttg |
39112393 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 102 - 193
Target Start/End: Complemental strand, 39103598 - 39103510
Alignment:
| Q |
102 |
aaaagacatgggaatgatttgttggatttgtaagcgaatgaaagatagttaccagcagcaattgaattgaaacacaaatgagaaacacaaga |
193 |
Q |
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| T |
39103598 |
aaaagacatgggaatgttttgttggatttgtaagcgaatgaaagatagttac---cagcgattgaattgaaacacaaatgagatacacaaga |
39103510 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 40 - 80
Target Start/End: Complemental strand, 39103647 - 39103608
Alignment:
| Q |
40 |
atatgcatggcatgaaaataaggttggaaagtatgaatgat |
80 |
Q |
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| T |
39103647 |
atatgcatgtcatgaaaataaggttggaaa-tatgaatgat |
39103608 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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