View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1706_low_35 (Length: 296)
Name: NF1706_low_35
Description: NF1706
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1706_low_35 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 272; Significance: 1e-152; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 272; E-Value: 1e-152
Query Start/End: Original strand, 1 - 284
Target Start/End: Complemental strand, 39167332 - 39167049
Alignment:
| Q |
1 |
ttgtttatgtatcttgtgtatttgagtacagaaggacagcgtgaggaatcaaagagagcatttgattctgcttcttgctaactcgcatataaggctacac |
100 |
Q |
| |
|
|||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39167332 |
ttgtttatgtatctggtttatttgagtacagaaggacagcgtgaggaatcaaagagagcatttgattctgcttcttgctaactcgcatataaggctacac |
39167233 |
T |
|
| Q |
101 |
cctaaacccgagccttttaacaaggcatgtatctgtttcatactttctctgtttcaggcaaaataaaagccaaaactgtaatcaaaagaacactagtcgg |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39167232 |
cctaaacccgagccttttaacaaggcatgtatctgtttcatactttctctgtttcaggcaaaataaaagccaaaactgtaatcaaaagaacactagtcgg |
39167133 |
T |
|
| Q |
201 |
taattgaattcacatgttttttctctgctttccttttgattttatcattccagctcgatgatcgtgctgttgattctgtgatga |
284 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39167132 |
taattgaattcacatgttttttctctgctttccttatgattttatcattccagctcgatgatcgtgctgttgattctgtgatga |
39167049 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 44 - 125
Target Start/End: Complemental strand, 43964785 - 43964704
Alignment:
| Q |
44 |
aggaatcaaagagagcatttgattctgcttcttgctaactcgcatataaggctacaccctaaacccgagccttttaacaagg |
125 |
Q |
| |
|
|||||||| ||||||||| | ||| |||||||||||||| ||||||||||||||||| |||||||||||| | ||||||| |
|
|
| T |
43964785 |
aggaatcagagagagcatctaattttgcttcttgctaacaaccatataaggctacaccccaaacccgagcctctcaacaagg |
43964704 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University